Rmu_sc0002187.1_g000005

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002187.1
OG0000179
Physical Location & Seq
Reverse (-)
9657 .. 12006
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002187.1_g000005.1.cds

Sequence Viewer

Length: 1956 bp
atgtttcgacaacctagatctggaagagaccaacaaaactcgcatgtactgttgttgaagtcttcgcatcatgatcagaacactcctcagaccccattcaagcttctcagcgatcgtgtaagcaacggttcagtgaagtggagcagtgcatttcttgcaaacgggggcttcttgtacacagagttctactgggaatgggtagaagatatcttaagcaggaatggcaagcttactcgggagtccggtctctatcgagcgatattcgcctcactattcagctatggccgtgttgcatctgtcatacgggctttctgcgagtactggtgccccacgacgaataccctccacacttctagcggggaaatgtccatatctctctgggatttggaccaacttggaggtttgtccattgctggacgattttatgatgaagttgttccagctgctgagaagctttctgcaacaagcaaagggagtcaacagagccaccgctatttgtttctcgcctaccataagctctgcaaagaaagccaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagttttgcgctataagaggcctccaaacaaaagcaccaggaacaaaagagatccgccccagaatgtgtttaatccatctggcaggatccatgagatccgacaacgtacttctgcagacctcgtagtatttgatgacttaggcattgagagtgaagatgtagagcccacctatttggctgcctctcttgcttgttggttgtgtctgtttgttttacccagagacgacactggtttgattcgtccgggaatattcaaagttgccaacaaaatgtcacagggtgtacagtttttcctagcagtaccagtgttggccaacatctatcagggtttaggcgagatttctatttccagcgatccaggtaactactcggctgcccttccttttcattatatttatgcatggctagcagagtactttggcacccactttcagtctccgcttcccaatgacctaaggccccgtatgccatacagtccacatcgattcagtcaacagtttggttatgtccaagacattcctggcagccttaagaatgacattcacaccagcgtattgactttgatttataagcattgggattcttgcaccagaatgaacaccaagtgcgtggtaacgttgccgatccagagtgctatcacggagtacatggttacccgagactatgtcgattggtggtctaaagtgttccgtgctacaccagtgaaggcaacaaaagaagcgcctactagtagaccactgcacaagactctgaaagcagaagaagataagaacgtcacccgtgcaacaccacctcatcacaaaaatgtgattcctcgtgaagttgaatgtagcaccaacgtccctgcgcctcctaataggactttgcttcctagtagtgattgccagactcataggcccaacactctagatgatgatggggattctttagattctcacattgctttggctcatccacttaagttgaaaagacttgccatcaaagaaagaaggcatagtggaagcagcggaagcaataatagtgaagtgcactttaagcgtcggaaaactgacaccagtcttggccctatttattgtgatcccaatgctgagttcactatgaatactgactttcttggtgacatttcaacttcttcacaaccgatgatgcaacgaaatgagggtgcagagattgatgatcattcactttgggggaacgatgacgcctcttcagaccctatacgtgttccttctgcaagaaaatccaatgcaaagaatgactcacagcaaattgaccctacaggtccacttaccaaggtgcatcctcctaagcctctaaataccatagccttttctgaggcctctcttgttggagctgctattatagatgccagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

651

Amino Acids

73.33

Weight (kDa)

8.78

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AccB1I GGYRCC 2 cut(s) 324, 1001
AccI GTMKAC 1 cut(s) 1312
AciI CCGC 5 cut(s) 357, 490, 635, 1019, 1587
AclI AACGTT 1 cut(s) 1196
AclWI GGATC 7 cut(s) 626, 661, 670, 674, 929, 1198, 1652
AcoI YGGCCR 2 cut(s) 283, 891
AcuI CTGAAG 1 cut(s) 1773
AcyI GRCGYC 1 cut(s) 1782
AdeI CACNNNGTG 2 cut(s) 860, 1185
AfaI GTAC 8 cut(s) 48, 176, 320, 688, 864, 882, 995, 1226
AfiI CCNNNNNNNGG 1 cut(s) 20
AflII CTTAAG 3 cut(s) 211, 1109, 1538
AflIII ACRYGT 1 cut(s) 1801
AgsI TTSAA 6 cut(s) 58, 100, 835, 1406, 1546, 1707
AhlI ACTAGT 1 cut(s) 1307
AjnI CCWGG 3 cut(s) 617, 937, 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 1655, 1687
AluBI AGCT 8 cut(s) 103, 229, 279, 443, 454, 517, 1934, 1953
AluI AGCT 8 cut(s) 103, 229, 279, 443, 454, 517, 1934, 1953
Alw21I GWGCWC 1 cut(s) 1611
Alw26I GTCTC 5 cut(s) 21, 251, 795, 1020, 1233
Alw44I GTGCAC 1 cut(s) 1607
AlwI GGATC 7 cut(s) 626, 661, 670, 674, 929, 1198, 1652
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 2 cut(s) 234, 1236
AoxI GGCC 7 cut(s) 283, 599, 891, 1037, 1475, 1642, 1917
ApaLI GTGCAC 1 cut(s) 1607
ApeKI GCWGC 6 cut(s) 443, 758, 953, 1104, 1584, 1934
Asp700I GAANNNNTTC 1 cut(s) 435
AspLEI GCGC 3 cut(s) 591, 1303, 1429
AspS9I GGNCC 5 cut(s) 388, 1038, 1476, 1643, 1862
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 1348, 1709
AsuNHI GCTAGC 1 cut(s) 985
AvaI CYCGRG 2 cut(s) 234, 1236
AvaII GGWCC 2 cut(s) 388, 1862
AxyI CCTNAGG 1 cut(s) 1034
BaeGI GKGCMC 2 cut(s) 329, 1611
BalI TGGCCA 1 cut(s) 893
BamHI GGATCC 1 cut(s) 666
BanI GGYRCC 2 cut(s) 324, 1001
BanII GRGCYC 1 cut(s) 747
BauI CACGAG 1 cut(s) 1395
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 1611
BbvI GCAGC 6 cut(s) 430, 745, 940, 1116, 1596, 1921
BccI CCATC 3 cut(s) 664, 1490, 1565
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 3 cut(s) 619, 939, 1101
BciVI GTATCC 1 cut(s) 555
BclI TGATCA 2 cut(s) 73, 1756
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 5 cut(s) 21, 251, 795, 1020, 1233
BcuI ACTAGT 1 cut(s) 1307
BfaI CTAG 7 cut(s) 15, 354, 875, 986, 1308, 1452, 1487
BfmI CTRYAG 2 cut(s) 693, 1857
BfoI RGCGCY 1 cut(s) 1304
BfrI CTTAAG 3 cut(s) 211, 1109, 1538
BfuI GTATCC 1 cut(s) 555
BglII AGATCT 1 cut(s) 17
BisI GCNGC 6 cut(s) 444, 759, 954, 1105, 1585, 1935
BlsI GCNGC 6 cut(s) 445, 760, 955, 1106, 1586, 1936
BmcAI AGTACT 2 cut(s) 320, 995
Bme1390I CCNGG 4 cut(s) 619, 825, 939, 1101
Bme18I GGWCC 2 cut(s) 388, 1862
BmeT110I CYCGRG 2 cut(s) 234, 1236
BmgT120I GGNCC 5 cut(s) 388, 1038, 1476, 1643, 1862
BmiI GGNNCC 4 cut(s) 326, 668, 1003, 1040
BmrFI CCNGG 4 cut(s) 619, 825, 939, 1101
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 5 cut(s) 76, 302, 1716, 1888, 1936
BmtI GCTAGC 1 cut(s) 989
BmuI ACTGGG 1 cut(s) 199
BoxI GACNNNNGTC 1 cut(s) 1635
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 1887
BpuMI CCSGG 1 cut(s) 825
Bsa29I ATCGAT 1 cut(s) 1063
BsaAI YACGTR 1 cut(s) 1802
BsaHI GRCGYC 1 cut(s) 1782
BsaI GGTCTC 2 cut(s) 21, 251
BsaJI CCNNGG 2 cut(s) 532, 1872
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 6 cut(s) 194, 326, 814, 884, 1280, 1635
Bse21I CCTNAGG 1 cut(s) 1034
Bse3DI GCAATG 2 cut(s) 408, 1518
BseBI CCWGG 3 cut(s) 619, 939, 1101
BseCI ATCGAT 1 cut(s) 1063
BseDI CCNNGG 2 cut(s) 532, 1872
BseGI GGATG 2 cut(s) 1531, 1879
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 2 cut(s) 408, 1518
BseMII CTCAG 5 cut(s) 101, 121, 438, 1659, 1905
BseNI ACTGG 6 cut(s) 194, 326, 814, 884, 1280, 1635
BseRI GAGGAG 2 cut(s) 75, 594
BseSI GKGCMC 2 cut(s) 329, 1611
BseXI GCAGC 6 cut(s) 430, 745, 940, 1116, 1596, 1921
BsgI GTGCAG 2 cut(s) 1304, 1764
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 7 cut(s) 285, 601, 893, 1039, 1477, 1644, 1919
BshNI GGYRCC 2 cut(s) 324, 1001
BshVI ATCGAT 1 cut(s) 1063
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 1611
BsiHKCI CYCGRG 2 cut(s) 234, 1236
BsiSI CCGG 2 cut(s) 243, 824
BslFI GGGAC 1 cut(s) 1406
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 5 cut(s) 21, 251, 795, 1020, 1233
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 1406
BsnI GGCC 7 cut(s) 285, 601, 893, 1039, 1477, 1644, 1919
Bso31I GGTCTC 2 cut(s) 21, 251
BsoBI CYCGRG 2 cut(s) 234, 1236
Bsp1286I GDGCHC 3 cut(s) 329, 747, 1611
Bsp1407I TGTACA 2 cut(s) 174, 862
BspACI CCGC 5 cut(s) 357, 490, 635, 1019, 1587
BspANI GGCC 7 cut(s) 285, 601, 893, 1039, 1477, 1644, 1919
BspCNI CTCAG 5 cut(s) 100, 120, 439, 1660, 1906
BspDI ATCGAT 1 cut(s) 1063
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 326, 668, 1003, 1040
BspMAI CTGCAG 1 cut(s) 697
BspOI GCTAGC 1 cut(s) 989
BspPI GGATC 7 cut(s) 626, 661, 670, 674, 929, 1198, 1652
BspT107I GGYRCC 2 cut(s) 324, 1001
BspTI CTTAAG 3 cut(s) 211, 1109, 1538
BspTNI GGTCTC 2 cut(s) 21, 251
BsrDI GCAATG 2 cut(s) 408, 1518
BsrGI TGTACA 2 cut(s) 174, 862
BsrI ACTGG 6 cut(s) 194, 326, 814, 884, 1280, 1635
BssECI CCNNGG 2 cut(s) 532, 1872
BssNI GRCGYC 1 cut(s) 1782
BssSI CACGAG 1 cut(s) 1395
BssT1I CCWWGG 2 cut(s) 532, 1872
Bst2BI CACGAG 1 cut(s) 1395
Bst2UI CCWGG 3 cut(s) 619, 939, 1101
Bst4CI ACNGT 5 cut(s) 51, 128, 867, 1055, 1077
Bst6I CTCTTC 2 cut(s) 19, 1792
BstACI GRCGYC 1 cut(s) 1782
BstAFI CTTAAG 3 cut(s) 211, 1109, 1538
BstAPI GCANNNNNTGC 1 cut(s) 155
BstAUI TGTACA 2 cut(s) 174, 862
BstBAI YACGTR 1 cut(s) 1802
BstC8I GCNNGC 3 cut(s) 227, 987, 1951
BstDEI CTNAG 8 cut(s) 87, 107, 447, 718, 1034, 1668, 1887, 1914
BstEII GGTNACC 1 cut(s) 1231
BstF5I GGATG 2 cut(s) 1531, 1879
BstH2I RGCGCY 1 cut(s) 1304
BstHHI GCGC 3 cut(s) 591, 1303, 1429
BstMAI GTCTC 5 cut(s) 21, 251, 795, 1020, 1233
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 9 cut(s) 155, 222, 263, 528, 767, 986, 1045, 1590, 1615
BstNI CCWGG 3 cut(s) 619, 939, 1101
BstNSI RCATGY 1 cut(s) 47
BstPAI GACNNNNGTC 1 cut(s) 1635
BstPI GGTNACC 1 cut(s) 1231
BstSCI CCNGG 4 cut(s) 617, 823, 937, 1099
BstSFI CTRYAG 2 cut(s) 693, 1857
BstSLI GKGCMC 2 cut(s) 329, 1611
BstV1I GCAGC 6 cut(s) 430, 745, 940, 1116, 1596, 1921
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 4 cut(s) 17, 631, 666, 675
BstXI CCANNNNNNTGG 2 cut(s) 754, 1189
BstYI RGATCY 4 cut(s) 17, 631, 666, 675
Bsu15I ATCGAT 1 cut(s) 1063
Bsu36I CCTNAGG 1 cut(s) 1034
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 7 cut(s) 285, 601, 893, 1039, 1477, 1644, 1919
BsuTUI ATCGAT 1 cut(s) 1063
BtsCI GGATG 2 cut(s) 1531, 1879
BtsI GCAGTG 2 cut(s) 151, 1316
BtsIMutI CAGTG 6 cut(s) 138, 151, 807, 891, 1287, 1316
Cac8I GCNNGC 3 cut(s) 227, 987, 1951
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 70
CfoI GCGC 3 cut(s) 591, 1303, 1429
Cfr13I GGNCC 5 cut(s) 388, 1038, 1476, 1643, 1862
ClaI ATCGAT 1 cut(s) 1063
CseI GACGC 2 cut(s) 1607, 1790
Csp6I GTAC 8 cut(s) 47, 175, 319, 687, 863, 881, 994, 1225
CspCI CAANNNNNGTGG 2 cut(s) 1524, 1559
CviAII CATG 6 cut(s) 44, 71, 558, 671, 981, 1228
CviQI GTAC 8 cut(s) 47, 175, 319, 687, 863, 881, 994, 1225
DdeI CTNAG 8 cut(s) 87, 107, 447, 718, 1034, 1668, 1887, 1914
DraIII CACNNNGTG 2 cut(s) 860, 1185
EaeI YGGCCR 2 cut(s) 283, 891
Eam1104I CTCTTC 2 cut(s) 19, 1792
EarI CTCTTC 2 cut(s) 19, 1792
EciI GGCGGA 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 532, 1872
Eco147I AGGCCT 2 cut(s) 601, 1919
Eco24I GRGCYC 1 cut(s) 747
Eco31I GGTCTC 2 cut(s) 21, 251
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 2 cut(s) 388, 1862
Eco57I CTGAAG 1 cut(s) 1773
Eco81I CCTNAGG 1 cut(s) 1034
Eco88I CYCGRG 2 cut(s) 234, 1236
Eco91I GGTNACC 1 cut(s) 1231
EcoO109I RGGNCCY 1 cut(s) 1038
EcoO65I GGTNACC 1 cut(s) 1231
EcoRII CCWGG 3 cut(s) 617, 937, 1099
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 532, 1872
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 532, 1872
Esp3I CGTCTC 1 cut(s) 795
FaeI CATG 6 cut(s) 47, 74, 561, 674, 984, 1231
FaqI GGGAC 1 cut(s) 1406
FatI CATG 6 cut(s) 43, 70, 557, 670, 980, 1227
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 2 cut(s) 73, 1756
FblI GTMKAC 1 cut(s) 1312
Fnu4HI GCNGC 6 cut(s) 444, 759, 954, 1105, 1585, 1935
FokI GGATG 2 cut(s) 1518, 1866
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 6 cut(s) 444, 759, 954, 1105, 1585, 1935
FspBI CTAG 7 cut(s) 15, 354, 875, 986, 1308, 1452, 1487
GlaI GCGC 3 cut(s) 590, 1302, 1428
GluI GCNGC 6 cut(s) 444, 759, 954, 1105, 1585, 1935
HaeII RGCGCY 1 cut(s) 1304
HaeIII GGCC 7 cut(s) 285, 601, 893, 1039, 1477, 1644, 1919
HapII CCGG 2 cut(s) 243, 824
HgaI GACGC 2 cut(s) 1607, 1790
HhaI GCGC 3 cut(s) 591, 1303, 1429
Hin1I GRCGYC 1 cut(s) 1782
Hin1II CATG 6 cut(s) 47, 74, 561, 674, 984, 1231
Hin6I GCGC 3 cut(s) 589, 1301, 1427
HinP1I GCGC 3 cut(s) 589, 1301, 1427
HincII GTYRAC 2 cut(s) 479, 1073
HindII GTYRAC 2 cut(s) 479, 1073
HindIII AAGCTT 3 cut(s) 101, 227, 452
HpaII CCGG 2 cut(s) 243, 824
HphI GGTGA 2 cut(s) 1348, 1709
Hpy166II GTNNAC 9 cut(s) 177, 479, 863, 1058, 1073, 1313, 1609, 1674, 1865
Hpy188I TCNGA 7 cut(s) 78, 90, 680, 1332, 1623, 1792, 1915
Hpy188III TCNNGA 6 cut(s) 21, 71, 236, 1207, 1397, 1487
Hpy8I GTNNAC 9 cut(s) 177, 479, 863, 1058, 1073, 1313, 1609, 1674, 1865
Hpy99I CGWCG 2 cut(s) 337, 1623
HpyAV CCTTC 4 cut(s) 968, 1279, 1563, 1818
HpyCH4III ACNGT 5 cut(s) 51, 128, 867, 1055, 1077
HpyCH4IV ACGT 5 cut(s) 685, 1196, 1353, 1419, 1801
HpyF10VI GCNNNNNNNGC 9 cut(s) 155, 222, 263, 528, 767, 986, 1045, 1590, 1615
HpyF3I CTNAG 8 cut(s) 87, 107, 447, 718, 1034, 1668, 1887, 1914
HpySE526I ACGT 5 cut(s) 685, 1196, 1353, 1419, 1801
Hsp92I GRCGYC 1 cut(s) 1782
Hsp92II CATG 6 cut(s) 47, 74, 561, 674, 984, 1231
HspAI GCGC 3 cut(s) 589, 1301, 1427
Ksp22I TGATCA 2 cut(s) 73, 1756
LmnI GCTCC 2 cut(s) 141, 1931
Lsp1109I GCAGC 6 cut(s) 430, 745, 940, 1116, 1596, 1921
LweI GCATC 5 cut(s) 76, 302, 1716, 1888, 1936
MaeI CTAG 7 cut(s) 15, 354, 875, 986, 1308, 1452, 1487
MaeII ACGT 5 cut(s) 685, 1196, 1353, 1419, 1801
MaeIII GTNAC 6 cut(s) 852, 941, 1192, 1231, 1354, 1697
MboII GAAGA 9 cut(s) 36, 54, 215, 559, 746, 1352, 1355, 1704, 1779
MflI RGATCY 4 cut(s) 17, 631, 666, 675
MhlI GDGCHC 3 cut(s) 329, 747, 1611
MlsI TGGCCA 1 cut(s) 893
MluCI AATT 1 cut(s) 1848
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 5 cut(s) 248, 484, 1321, 1462, 1832
MmeI TCCRAC 3 cut(s) 703, 1601, 1909
Mox20I TGGCCA 1 cut(s) 893
Mph1103I ATGCAT 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 893
MseI TTAA 5 cut(s) 212, 651, 1110, 1539, 1614
MslI CAYNNNNRTG 2 cut(s) 1172, 1383
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 2 cut(s) 443, 1587
MspCI CTTAAG 3 cut(s) 211, 1109, 1538
MspI CCGG 2 cut(s) 243, 824
MspR9I CCNGG 4 cut(s) 619, 825, 939, 1101
MvaI CCWGG 3 cut(s) 619, 939, 1101
MwoI GCNNNNNNNGC 9 cut(s) 155, 222, 263, 528, 767, 986, 1045, 1590, 1615
NciI CCSGG 1 cut(s) 825
NheI GCTAGC 1 cut(s) 985
NlaIII CATG 6 cut(s) 47, 74, 561, 674, 984, 1231
NlaIV GGNNCC 4 cut(s) 326, 668, 1003, 1040
NmeAIII GCCGAG 1 cut(s) 929
NmuCI GTSAC 3 cut(s) 852, 1354, 1697
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 47
PagI TCATGA 1 cut(s) 70
PceI AGGCCT 2 cut(s) 601, 1919
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 6 cut(s) 817, 1065, 1160, 1390, 1502, 1511
PflFI GACNNNGTC 1 cut(s) 1244
PfoI TCCNGGA 1 cut(s) 823
PkrI GCNGC 6 cut(s) 445, 760, 955, 1106, 1586, 1936
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 5 cut(s) 247, 483, 1321, 1462, 1832
PpsI GAGTC 5 cut(s) 247, 483, 1321, 1462, 1832
Ppu21I YACGTR 1 cut(s) 1802
PshAI GACNNNNGTC 1 cut(s) 1635
PsiI TTATAA 1 cut(s) 1149
Psp1406I AACGTT 1 cut(s) 1196
Psp6I CCWGG 3 cut(s) 617, 937, 1099
PspEI GGTNACC 1 cut(s) 1231
PspGI CCWGG 3 cut(s) 617, 937, 1099
PspN4I GGNNCC 4 cut(s) 326, 668, 1003, 1040
PspPI GGNCC 5 cut(s) 388, 1038, 1476, 1643, 1862
PsrI GAACNNNNNNTAC 2 cut(s) 167, 199
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 4 cut(s) 17, 631, 666, 675
PsyI GACNNNGTC 1 cut(s) 1244
PvuI CGATCG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 8 cut(s) 48, 176, 320, 688, 864, 882, 995, 1226
RsaNI GTAC 8 cut(s) 47, 175, 319, 687, 863, 881, 994, 1225
RseI CAYNNNNRTG 2 cut(s) 1172, 1383
SaqAI TTAA 5 cut(s) 212, 651, 1110, 1539, 1614
SatI GCNGC 6 cut(s) 444, 759, 954, 1105, 1585, 1935
Sau96I GGNCC 5 cut(s) 388, 1038, 1476, 1643, 1862
ScaI AGTACT 2 cut(s) 320, 995
SchI GAGTC 5 cut(s) 248, 484, 1321, 1462, 1832
ScrFI CCNGG 4 cut(s) 619, 825, 939, 1101
SduI GDGCHC 3 cut(s) 329, 747, 1611
SfaNI GCATC 5 cut(s) 76, 302, 1716, 1888, 1936
SfcI CTRYAG 2 cut(s) 693, 1857
SinI GGWCC 2 cut(s) 388, 1862
SmiMI CAYNNNNRTG 2 cut(s) 1172, 1383
SmlI CTYRAG 3 cut(s) 211, 1109, 1538
SmoI CTYRAG 3 cut(s) 211, 1109, 1538
SpeI ACTAGT 1 cut(s) 1307
Sse9I AATT 1 cut(s) 1848
SseBI AGGCCT 2 cut(s) 601, 1919
SsiI CCGC 5 cut(s) 357, 490, 635, 1019, 1587
SspI AATATT 1 cut(s) 831
SspMI CTAG 7 cut(s) 15, 354, 875, 986, 1308, 1452, 1487
StuI AGGCCT 2 cut(s) 601, 1919
StyD4I CCNGG 4 cut(s) 617, 823, 937, 1099
StyI CCWWGG 2 cut(s) 532, 1872
TaaI ACNGT 5 cut(s) 51, 128, 867, 1055, 1077
TaiI ACGT 5 cut(s) 688, 1199, 1356, 1422, 1804
TaqI TCGA 4 cut(s) 7, 253, 1063, 1248
TasI AATT 1 cut(s) 1848
TatI WGTACW 6 cut(s) 46, 174, 318, 862, 993, 1224
TfiI GAWTC 6 cut(s) 817, 1065, 1160, 1390, 1502, 1511
Tru1I TTAA 5 cut(s) 212, 651, 1110, 1539, 1614
Tru9I TTAA 5 cut(s) 212, 651, 1110, 1539, 1614
TscAI CASTG 6 cut(s) 138, 151, 814, 891, 1287, 1323
TseFI GTSAC 3 cut(s) 852, 1354, 1697
TseI GCWGC 6 cut(s) 443, 758, 953, 1104, 1584, 1934
Tsp45I GTSAC 3 cut(s) 852, 1354, 1697
TspDTI ATGAA 5 cut(s) 444, 546, 956, 1190, 1694
TspGWI ACGGA 2 cut(s) 1235, 1259
TspRI CASTG 6 cut(s) 138, 151, 814, 891, 1287, 1323
Tth111I GACNNNGTC 1 cut(s) 1244
Vha464I CTTAAG 3 cut(s) 211, 1109, 1538
VneI GTGCAC 1 cut(s) 1607
VpaK11BI GGWCC 2 cut(s) 388, 1862
XbaI TCTAGA 1 cut(s) 1486
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 7 cut(s) 15, 354, 875, 986, 1308, 1452, 1487
ZrmI AGTACT 2 cut(s) 320, 995
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.