pycom16g21210

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000179
Physical Location & Seq
Reverse (-)
19551855 .. 19552750
896 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21210.2

Sequence Viewer

Length: 717 bp
ATGCATATTAAGTCGTGGTCTTCTGAAGTATCTTGGGAGGTGGCAGACTTTGTTCGATCAAATACGGAGAAGAAGGCGTGCACACTGAGGATTCTTATCTTGAACCTTTCGCACCACGCTCGTGACAATCATCCAGCTTCGTTTAAGCTTCTTGGTGATCACATCCGCAGCAGAGCTATGGCTTGGAATAATGCCTTGTCAACTACCGGAGAAGCCGTTTTTGCTGAGTCTTATTGGGAGTGGCTTGAAGATGTCTTGGGCCGATCTAAACATGTGCTTACTAGCGTGGGCCTTTACCATGCCGTGTACGCATCTTTGTTCAGTTATGATCTCCATCATTCCGTCCTTCATGCGTTCTTCAAGCATTGGTGTTCAGCGACTAACACGCTTCATACAGCTCAAGGAGAGATGTTAATTTCACTTTGGGATCTCCACAAGATAGGGGGCTTGCCAATCCAAGGCGTGAAGATTTCTTCATGGATCCGCTTCTGGTATTGGGAGGACATAAGGTACAAGAAGTCCTTGAAAAAAAGAGGTTGCAACAAAACCACTAAGCTAAAGGGAGACCCATATCCGTCTGGTGCTATTGGTTCAGCTAGGCGCCGTTCCCCTGCCGAGTTGAGAGCGTTTGAGGACCTTGGCATAGCATCAGAGCATGTTTGTTTTTCCAACCGGCGACGTCAGCTTTGTTCGTCCTGGGGTTTTCAAAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

239

Amino Acids

27.29

Weight (kDa)

9.42

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 600
AciI CCGC 2 cut(s) 166, 484
AclWI GGATC 3 cut(s) 435, 475, 488
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 601, 679
AfaI GTAC 2 cut(s) 308, 512
AfiI CCNNNNNNNGG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 5 cut(s) 103, 248, 361, 526, 707
AjnI CCWGG 1 cut(s) 695
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 7 cut(s) 137, 148, 176, 398, 556, 596, 685
AluI AGCT 7 cut(s) 137, 148, 176, 398, 556, 596, 685
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 79
AlwI GGATC 3 cut(s) 435, 475, 488
AoxI GGCC 2 cut(s) 259, 289
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 168
ArsI GACNNNNNNTTYG 2 cut(s) 669, 701
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 259, 289, 634
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 83
BamHI GGATCC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 600
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 342
BceAI ACGGC 3 cut(s) 200, 287, 588
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 697
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 2 cut(s) 282, 597
BfoI RGCGCY 1 cut(s) 604
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 697
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 259, 289, 634
BmiI GGNNCC 2 cut(s) 482, 602
BmrFI CCNGG 1 cut(s) 697
BmsI GCATC 2 cut(s) 320, 656
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 384
BsaBI GATNNNNATC 2 cut(s) 95, 333
BsaHI GRCGYC 2 cut(s) 601, 679
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 457, 637, 696
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 1 cut(s) 672
Bse8I GATNNNNATC 2 cut(s) 95, 333
BseBI CCWGG 1 cut(s) 697
BseDI CCNNGG 3 cut(s) 457, 637, 696
BseGI GGATG 2 cut(s) 130, 162
BseJI GATNNNNATC 2 cut(s) 95, 333
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 77, 216
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 2 cut(s) 261, 291
BshNI GGYRCC 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 207, 673
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 558
BsnI GGCC 2 cut(s) 261, 291
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 6 cut(s) 56, 157, 263, 328, 427, 480
BspACI CCGC 2 cut(s) 166, 484
BspANI GGCC 2 cut(s) 261, 291
BspCNI CTCAG 2 cut(s) 78, 217
BspLI GGNNCC 2 cut(s) 482, 602
BspPI GGATC 3 cut(s) 435, 475, 488
BspT107I GGYRCC 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 672
BssECI CCNNGG 3 cut(s) 457, 637, 696
BssMI GATC 6 cut(s) 56, 157, 263, 328, 427, 480
BssNI GRCGYC 2 cut(s) 601, 679
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 457, 637
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 697
BstACI GRCGYC 2 cut(s) 601, 679
BstC8I GCNNGC 2 cut(s) 79, 449
BstDEI CTNAG 3 cut(s) 86, 225, 552
BstF5I GGATG 2 cut(s) 130, 162
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 6 cut(s) 59, 160, 266, 331, 430, 483
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 6 cut(s) 56, 157, 263, 328, 427, 480
BstMWI GCNNNNNNNGC 3 cut(s) 221, 308, 682
BstNI CCWGG 1 cut(s) 697
BstNSI RCATGY 2 cut(s) 275, 659
BstSCI CCNGG 1 cut(s) 695
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 427, 480
BstYI RGATCY 2 cut(s) 427, 480
BsuRI GGCC 2 cut(s) 261, 291
BtsCI GGATG 2 cut(s) 130, 162
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 79, 449
CfoI GCGC 1 cut(s) 603
Cfr10I RCCGGY 1 cut(s) 672
Cfr13I GGNCC 3 cut(s) 259, 289, 634
Csp6I GTAC 2 cut(s) 307, 511
CviAII CATG 5 cut(s) 272, 299, 350, 477, 656
CviQI GTAC 2 cut(s) 307, 511
DdeI CTNAG 3 cut(s) 86, 225, 552
DinI GGCGCC 1 cut(s) 602
DpnI GATC 6 cut(s) 58, 159, 265, 330, 429, 482
DpnII GATC 6 cut(s) 56, 157, 263, 328, 427, 480
Eco130I CCWWGG 2 cut(s) 457, 637
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 695
EcoT14I CCWWGG 2 cut(s) 457, 637
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 602
EheI GGCGCC 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 457, 637
FaeI CATG 5 cut(s) 275, 302, 353, 480, 659
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FatI CATG 5 cut(s) 271, 298, 349, 476, 655
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 117, 149
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 2 cut(s) 282, 597
GlaI GCGC 1 cut(s) 602
GluI GCNGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 2 cut(s) 261, 291
HapII CCGG 2 cut(s) 207, 673
HhaI GCGC 1 cut(s) 603
Hin1I GRCGYC 2 cut(s) 601, 679
Hin1II CATG 5 cut(s) 275, 302, 353, 480, 659
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 91, 227
HpaII CCGG 2 cut(s) 207, 673
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 81, 201, 307
Hpy188I TCNGA 2 cut(s) 25, 652
Hpy188III TCNNGA 2 cut(s) 100, 122
Hpy8I GTNNAC 3 cut(s) 81, 201, 307
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 2 cut(s) 67, 356
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 3 cut(s) 4, 81, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 308, 682
HpyF3I CTNAG 3 cut(s) 86, 225, 552
HpySE526I ACGT 1 cut(s) 679
Hsp92I GRCGYC 2 cut(s) 601, 679
Hsp92II CATG 5 cut(s) 275, 302, 353, 480, 659
HspAI GCGC 1 cut(s) 601
KasI GGCGCC 1 cut(s) 600
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 6 cut(s) 56, 157, 263, 328, 427, 480
LpnPI CCDG 8 cut(s) 147, 220, 475, 564, 624, 682, 686, 709
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 320, 656
MaeI CTAG 2 cut(s) 282, 597
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 1 cut(s) 122
MalI GATC 6 cut(s) 58, 159, 265, 330, 429, 482
MboI GATC 6 cut(s) 56, 157, 263, 328, 427, 480
MboII GAAGA 6 cut(s) 12, 82, 260, 349, 465, 478
MflI RGATCY 2 cut(s) 427, 480
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 414
Mly113I GGCGCC 1 cut(s) 601
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 5 cut(s) 31, 81, 493, 527, 625
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 9, 144, 413
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 2 cut(s) 207, 673
MspR9I CCNGG 1 cut(s) 697
MvaI CCWGG 1 cut(s) 697
MwoI GCNNNNNNNGC 3 cut(s) 221, 308, 682
NarI GGCGCC 1 cut(s) 601
NdeII GATC 6 cut(s) 56, 157, 263, 328, 427, 480
NlaIII CATG 5 cut(s) 275, 302, 353, 480, 659
NlaIV GGNNCC 2 cut(s) 482, 602
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 275, 659
OliI CACNNNNGTG 1 cut(s) 120
PciI ACATGT 1 cut(s) 271
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 695
PspGI CCWGG 1 cut(s) 695
PspN4I GGNNCC 2 cut(s) 482, 602
PspPI GGNCC 3 cut(s) 259, 289, 634
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 2 cut(s) 427, 480
RsaI GTAC 2 cut(s) 308, 512
RsaNI GTAC 2 cut(s) 307, 511
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 3 cut(s) 9, 144, 413
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 6 cut(s) 56, 157, 263, 328, 427, 480
Sau96I GGNCC 3 cut(s) 259, 289, 634
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 697
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 2 cut(s) 320, 656
SfoI GGCGCC 1 cut(s) 602
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 1 cut(s) 414
SsiI CCGC 2 cut(s) 166, 484
SspDI GGCGCC 1 cut(s) 600
SspMI CTAG 2 cut(s) 282, 597
StyD4I CCNGG 1 cut(s) 695
StyI CCWWGG 2 cut(s) 457, 637
TaiI ACGT 1 cut(s) 682
TaqI TCGA 1 cut(s) 55
TasI AATT 1 cut(s) 414
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 3 cut(s) 9, 144, 413
Tru9I TTAA 3 cut(s) 9, 144, 413
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 3 cut(s) 338, 380, 465
TspGWI ACGGA 3 cut(s) 80, 331, 564
TspRI CASTG 1 cut(s) 90
VneI GTGCAC 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 634
XceI RCATGY 2 cut(s) 275, 659
XspI CTAG 2 cut(s) 282, 597
ZraI GACGTC 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.