Rmu_sc0000962.1_g000044

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000962.1
OG0000179
Physical Location & Seq
Forward (+)
188191 .. 188535
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000962.1_g000044.1.cds

Sequence Viewer

Length: 345 bp
atgtcacagggtgtacagttttgcctagcagtactagtgttggctaacatctatcaagttttaggcgagatttctgtttccagcgatccaggtaactgctcggctgcccttccttttcattatatttatgcatggctagcagagtactttggcacccactttcagtctccgcttcccaacgacctaaggccccgtatggttagcttctccggagaattttcagctaaatattgtggggactcacaggcgctttctttgttcaatgcatgtgataatgtgaggatggatgcatttgccagggtattttcggagagcagagtgattatcaaccgtgagaacatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

5.13

Isoelectric Point (pI)

59.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 3 cut(s) 15, 33, 146
AgsI TTSAA 1 cut(s) 262
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 2 cut(s) 88, 296
AluBI AGCT 2 cut(s) 204, 224
AluI AGCT 2 cut(s) 204, 224
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 189
AsuNHI GCTAGC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 185
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 90, 298
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 3 cut(s) 26, 35, 137
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmcAI AGTACT 2 cut(s) 33, 146
Bme1390I CCNGG 2 cut(s) 90, 298
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 154, 191
BmrFI CCNGG 2 cut(s) 90, 298
BmsI GCATC 1 cut(s) 277
BmtI GCTAGC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 209
Bse21I CCTNAGG 1 cut(s) 185
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 2 cut(s) 90, 298
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 288, 292
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 190
Bsp13I TCCGGA 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 190
BspEI TCCGGA 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 154, 191
BspOI GCTAGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 90, 298
Bst4CI ACNGT 2 cut(s) 18, 332
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 288, 292
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 90, 298
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 88, 296
BstV1I GCAGC 1 cut(s) 91
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 288, 292
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 14, 32, 145
CviAII CATG 2 cut(s) 132, 267
CviJI RGCY 6 cut(s) 44, 104, 136, 190, 204, 224
CviKI_1 RGCY 6 cut(s) 44, 104, 136, 190, 204, 224
CviQI GTAC 3 cut(s) 14, 32, 145
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 88, 296
EcoT22I ATGCAT 3 cut(s) 133, 268, 292
FaeI CATG 2 cut(s) 135, 270
FaiI YATR 5 cut(s) 123, 129, 133, 197, 268
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 131, 266
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 2 cut(s) 295, 299
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 3 cut(s) 26, 35, 137
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 135, 270
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 18, 332
HpyCH4V TGCA 3 cut(s) 131, 266, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 135, 270
HspAI GCGC 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 209
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 75, 94, 102, 223, 230, 283, 310
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 277
MaeI CTAG 3 cut(s) 26, 35, 137
MaeIII GTNAC 2 cut(s) 3, 92
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 1 cut(s) 273
Mph1103I ATGCAT 3 cut(s) 133, 268, 292
MroI TCCGGA 1 cut(s) 209
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 90, 298
MvaI CCWGG 2 cut(s) 90, 298
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 2 cut(s) 135, 270
NlaIV GGNNCC 2 cut(s) 154, 191
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 3 cut(s) 133, 268, 292
NspI RCATGY 1 cut(s) 270
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 88, 296
PspGI CCWGG 2 cut(s) 88, 296
PspN4I GGNNCC 2 cut(s) 154, 191
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 3 cut(s) 15, 33, 146
RsaNI GTAC 3 cut(s) 14, 32, 145
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 189
ScaI AGTACT 2 cut(s) 33, 146
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 90, 298
SetI ASST 4 cut(s) 94, 186, 206, 226
SfaNI GCATC 1 cut(s) 277
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 170
SspI AATATT 1 cut(s) 230
SspMI CTAG 3 cut(s) 26, 35, 137
StyD4I CCNGG 2 cut(s) 88, 296
TaaI ACNGT 2 cut(s) 18, 332
TasI AATT 1 cut(s) 215
TatI WGTACW 3 cut(s) 13, 31, 144
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 107
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 270
XspI CTAG 3 cut(s) 26, 35, 137
ZrmI AGTACT 2 cut(s) 33, 146
Zsp2I ATGCAT 3 cut(s) 133, 268, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.