MD07G1097100.v1.1

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000179
Physical Location & Seq
Reverse (-)
10667518 .. 10669038
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1097100.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGCATTGGGAGTCTTGTACCCGTGCATTTACGAATGCTTATATCACCCTGCCAGCCAAGGACGAGTTCAGGGGTAATCCAGTGACTCGTGTTTACGCGCATTGGTGGTCAAAGGTACATCATGAGGATTTGGGGATGGCAAGTGGTAATAATTCTTCCCATTCACGCCACGATGCGTTGAAAGAAGGCAGTTTTGCGACTCCTATGCAGCTGGTACCTTTTGATTGTGTGAGTGCAACTCCCTTGCAAGACAGACCTGTGGCTTTAGTCCGTCAACGTTTGTGCTCATCTCCTCACCATTTGGATGCTTCTGAAGAGGCGGGTGACGAGGTTGATTCGTATGAAGATGGACTTGTTTTGCGGCAGCGCCAACAAGTTTTAAACAAACGACCACTTGAAGTTGCTCAGGTTGACAGCGATGTCAATTTTCGTCATAAAAAGAAAGAAGTGTTTAGGCCTCCCCAATCCGATGGTCGTGTGTCTCTAGAGAAAGATGTTGGGCCTTCTTGTCCTTTTGATTTGGCCGCCGCGGGTGTTCACTCCTATATGGATATGCTACTTGGAGGCGATCTGCTTACAGACGGGGAGATCGGGGATCCGCCCGGTGAAGAGCTCGTTCAAAATTCGCCCAATCTTCCAAGCCTGCCGTGTGTAGGTGAAGGCGTGCAAGAGTCCATCATACGTCCAGCACCTTTGCCAGCTAGTTCTGCGATCTCTTTGAGAGGGCCGAACCTTAATGGTACCGAGCAATTTATCCATCGCCTCAAACTTCGTGCTGCCTTGGATGTCAAAAGCCATATTGAGAGTAGGATTTCGAAGTGTTCGCTGGAAGACCTTTCATTGCTCGAAGAAGATTTGTCGAAGCTTGTTTCTACGATTGACAACCTTAATGTTGATTCTTCGTCTTTGAGGAACAAGATTGCCGAACTTATGGCCGCCTCCACTGAGTATTCTTCCTTGCGCGCTATTTCCTTGAAGAAATTGAGCCCAGATGATCGAGCTCAACAGCTTGCAGCGATAGACTTGTCCTTGGCCCGAGTCCGGTCTTCTCAGCAAGTTGCTTCGGGAGATTATCAAGTCACAGAGGCTTCTTTAGCTTCCGTCCAGGTGCGTCTGGATGCGTTGGTACGAGAGCGAGAGCAGTTGGGAACTCAAGCATCACAACTTGAAAAAGTTCTTGCAGAACAGAGAGCTACACTTTCTCAGCACCATGAGGAGACCTCACGTCTAGAACAAGAGAAAGGCCTGGCTATGGATTTGCCCACCTTGTCTCCGACCGAGGTGGAGACTTTGAAGACTTTGGAAGGCTTGCTTCAAGATCGCCTCCGTAGTTTTAGGGACATATCTTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

452

Amino Acids

49.83

Weight (kDa)

5.33

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
Acc65I GGTACC 2 cut(s) 214, 740
AccB1I GGYRCC 2 cut(s) 214, 740
AccII CGCG 3 cut(s) 98, 530, 963
AciI CCGC 7 cut(s) 320, 361, 525, 528, 530, 599, 936
AclI AACGTT 1 cut(s) 277
AclWI GGATC 2 cut(s) 590, 603
AcoI YGGCCR 2 cut(s) 522, 933
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 5 cut(s) 19, 117, 216, 742, 1128
AfiI CCNNNNNNNGG 3 cut(s) 653, 1041, 1252
AgsI TTSAA 7 cut(s) 181, 398, 620, 976, 1169, 1294, 1316
AhdI GACNNNNNGTC 1 cut(s) 1224
AjiI CACGTC 1 cut(s) 1226
AjnI CCWGG 2 cut(s) 1104, 1245
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 8 cut(s) 211, 613, 701, 865, 1001, 1009, 1097, 1193
AluI AGCT 8 cut(s) 211, 613, 701, 865, 1001, 1009, 1097, 1193
Alw21I GWGCWC 3 cut(s) 287, 615, 1003
Alw26I GTCTC 4 cut(s) 486, 1211, 1275, 1280
AlwI GGATC 2 cut(s) 590, 603
Ama87I CYCGRG 1 cut(s) 1035
AoxI GGCC 7 cut(s) 455, 500, 522, 725, 933, 1032, 1243
ApeKI GCWGC 4 cut(s) 208, 364, 776, 1013
ApoI RAATTY 1 cut(s) 622
Asp700I GAANNNNTTC 1 cut(s) 1173
Asp718I GGTACC 2 cut(s) 214, 740
AspLEI GCGC 4 cut(s) 100, 369, 963, 965
AspS9I GGNCC 3 cut(s) 500, 725, 1033
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 5 cut(s) 37, 287, 335, 617, 668
AsuII TTCGAA 1 cut(s) 815
AvaI CYCGRG 1 cut(s) 1035
BamHI GGATCC 1 cut(s) 595
BanI GGYRCC 2 cut(s) 214, 740
BanII GRGCYC 3 cut(s) 615, 989, 1003
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 3 cut(s) 837, 1038, 1301
Bbv12I GWGCWC 3 cut(s) 287, 615, 1003
BbvI GCAGC 4 cut(s) 220, 376, 763, 1025
BccI CCATC 5 cut(s) 130, 341, 464, 683, 765
BceAI ACGGC 1 cut(s) 631
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 2 cut(s) 1106, 1247
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 4 cut(s) 486, 1211, 1275, 1280
BfaI CTAG 3 cut(s) 485, 702, 1229
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 8 cut(s) 209, 362, 365, 525, 528, 777, 936, 1014
BlsI GCNGC 8 cut(s) 210, 363, 366, 526, 529, 778, 937, 1015
Bme1390I CCNGG 3 cut(s) 603, 1106, 1247
BmeRI GACNNNNNGTC 1 cut(s) 1224
BmeT110I CYCGRG 1 cut(s) 1035
BmgBI CACGTC 1 cut(s) 1226
BmgT120I GGNCC 3 cut(s) 500, 725, 1033
BmiI GGNNCC 3 cut(s) 216, 597, 742
BmrFI CCNGG 3 cut(s) 603, 1106, 1247
BmsI GCATC 4 cut(s) 163, 295, 1108, 1166
BpiI GAAGAC 3 cut(s) 837, 1038, 1301
BplI GAGNNNNNCTC 4 cut(s) 223, 255, 1205, 1237
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 1 cut(s) 1137
BpuMI CCSGG 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 1211
BsaJI CCNNGG 5 cut(s) 57, 528, 780, 1029, 1278
BsaWI WCCGGW 1 cut(s) 1041
BsaXI ACNNNNNCTCC 2 cut(s) 1255, 1285
Bsc4I CCNNNNNNNGG 3 cut(s) 653, 1041, 1252
Bse1I ACTGG 2 cut(s) 80, 1351
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 2 cut(s) 1106, 1247
BseDI CCNNGG 5 cut(s) 57, 528, 780, 1029, 1278
BseGI GGATG 4 cut(s) 141, 310, 790, 1123
BseLI CCNNNNNNNGG 3 cut(s) 653, 1041, 1252
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 4 cut(s) 419, 936, 1064, 1217
BseNI ACTGG 2 cut(s) 80, 1351
BsePI GCGCGC 1 cut(s) 961
BseRI GAGGAG 2 cut(s) 282, 1229
BseXI GCAGC 4 cut(s) 220, 376, 763, 1025
Bsh1236I CGCG 3 cut(s) 98, 530, 963
Bsh1285I CGRYCG 1 cut(s) 1278
BshFI GGCC 7 cut(s) 457, 502, 524, 727, 935, 1034, 1245
BshNI GGYRCC 2 cut(s) 214, 740
BsiEI CGRYCG 1 cut(s) 1278
BsiHKAI GWGCWC 3 cut(s) 287, 615, 1003
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 2 cut(s) 603, 1042
BslFI GGGAC 1 cut(s) 1352
BslI CCNNNNNNNGG 3 cut(s) 653, 1041, 1252
BsmAI GTCTC 4 cut(s) 486, 1211, 1275, 1280
BsmFI GGGAC 1 cut(s) 1352
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 7 cut(s) 457, 502, 524, 727, 935, 1034, 1245
Bso31I GGTCTC 1 cut(s) 1211
BsoBI CYCGRG 1 cut(s) 1035
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 4 cut(s) 287, 615, 989, 1003
Bsp143I GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
BspACI CCGC 7 cut(s) 320, 361, 525, 528, 530, 599, 936
BspANI GGCC 7 cut(s) 457, 502, 524, 727, 935, 1034, 1245
BspCNI CTCAG 4 cut(s) 418, 937, 1063, 1216
BspFNI CGCG 3 cut(s) 98, 530, 963
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 216, 597, 742
BspPI GGATC 2 cut(s) 590, 603
BspQI GCTCTTC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 815
BspT107I GGYRCC 2 cut(s) 214, 740
BspTNI GGTCTC 1 cut(s) 1211
BsrDI GCAATG 1 cut(s) 839
BsrI ACTGG 2 cut(s) 80, 1351
BssECI CCNNGG 5 cut(s) 57, 528, 780, 1029, 1278
BssHII GCGCGC 1 cut(s) 961
BssMI GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 3 cut(s) 57, 780, 1029
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 1106, 1247
Bst6I CTCTTC 2 cut(s) 309, 603
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 7 cut(s) 54, 644, 665, 699, 963, 1011, 1310
BstDEI CTNAG 4 cut(s) 405, 945, 1050, 1203
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 4 cut(s) 141, 310, 790, 1123
BstFNI CGCG 3 cut(s) 98, 530, 963
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 4 cut(s) 100, 369, 963, 965
BstKTI GATC 6 cut(s) 571, 591, 598, 714, 997, 1321
BstMAI GTCTC 4 cut(s) 486, 1211, 1275, 1280
BstMBI GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
BstMCI CGRYCG 1 cut(s) 1278
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1094
BstNI CCWGG 2 cut(s) 1106, 1247
BstSCI CCNGG 3 cut(s) 601, 1104, 1245
BstUI CGCG 3 cut(s) 98, 530, 963
BstV1I GCAGC 4 cut(s) 220, 376, 763, 1025
BstV2I GAAGAC 3 cut(s) 837, 1038, 1301
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 7 cut(s) 457, 502, 524, 727, 935, 1034, 1245
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 2 cut(s) 432, 743
BtrI CACGTC 1 cut(s) 1226
BtsCI GGATG 4 cut(s) 141, 310, 790, 1123
BtsIMutI CAGTG 2 cut(s) 87, 942
Cac8I GCNNGC 7 cut(s) 54, 644, 665, 699, 963, 1011, 1310
CciI TCATGA 1 cut(s) 121
CfoI GCGC 4 cut(s) 100, 369, 963, 965
Cfr13I GGNCC 3 cut(s) 500, 725, 1033
Cfr42I CCGCGG 1 cut(s) 531
CseI GACGC 1 cut(s) 1100
Csp6I GTAC 5 cut(s) 18, 116, 215, 741, 1127
CviAII CATG 2 cut(s) 122, 1211
CviQI GTAC 5 cut(s) 18, 116, 215, 741, 1127
DdeI CTNAG 4 cut(s) 405, 945, 1050, 1203
DpnI GATC 6 cut(s) 570, 590, 597, 713, 996, 1320
DpnII GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
DraI TTTAAA 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 1224
DseDI GACNNNNNNGTC 1 cut(s) 419
EaeI YGGCCR 2 cut(s) 522, 933
Eam1104I CTCTTC 2 cut(s) 309, 603
Eam1105I GACNNNNNGTC 1 cut(s) 1224
EarI CTCTTC 2 cut(s) 309, 603
EciI GGCGGA 1 cut(s) 588
Ecl136II GAGCTC 2 cut(s) 613, 1001
Eco130I CCWWGG 3 cut(s) 57, 780, 1029
Eco147I AGGCCT 2 cut(s) 457, 1245
Eco24I GRGCYC 3 cut(s) 615, 989, 1003
Eco31I GGTCTC 1 cut(s) 1211
Eco53kI GAGCTC 2 cut(s) 613, 1001
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 1035
EcoICRI GAGCTC 2 cut(s) 613, 1001
EcoRII CCWGG 2 cut(s) 1104, 1245
EcoT14I CCWWGG 3 cut(s) 57, 780, 1029
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 615, 989, 1003
ErhI CCWWGG 3 cut(s) 57, 780, 1029
FaeI CATG 2 cut(s) 125, 1214
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 1296, 1328
FaqI GGGAC 1 cut(s) 1352
FatI CATG 2 cut(s) 121, 1210
FauI CCCGC 2 cut(s) 313, 523
Fnu4HI GCNGC 8 cut(s) 209, 362, 365, 525, 528, 777, 936, 1014
FokI GGATG 4 cut(s) 148, 317, 797, 1130
FriOI GRGCYC 3 cut(s) 615, 989, 1003
Fsp4HI GCNGC 8 cut(s) 209, 362, 365, 525, 528, 777, 936, 1014
FspBI CTAG 3 cut(s) 485, 702, 1229
GlaI GCGC 4 cut(s) 99, 368, 962, 964
GluI GCNGC 8 cut(s) 209, 362, 365, 525, 528, 777, 936, 1014
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 7 cut(s) 457, 502, 524, 727, 935, 1034, 1245
HapII CCGG 2 cut(s) 603, 1042
HgaI GACGC 1 cut(s) 1100
HhaI GCGC 4 cut(s) 100, 369, 963, 965
Hin1II CATG 2 cut(s) 125, 1214
Hin6I GCGC 4 cut(s) 98, 367, 961, 963
HinP1I GCGC 4 cut(s) 98, 367, 961, 963
HincII GTYRAC 2 cut(s) 275, 412
HindII GTYRAC 2 cut(s) 275, 412
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 7 cut(s) 11, 85, 199, 335, 671, 896, 1038
HpaII CCGG 2 cut(s) 603, 1042
HphI GGTGA 5 cut(s) 37, 287, 335, 617, 668
Hpy166II GTNNAC 4 cut(s) 94, 275, 412, 538
Hpy188I TCNGA 3 cut(s) 313, 469, 1275
Hpy188III TCNNGA 6 cut(s) 122, 485, 1065, 1115, 1229, 1316
Hpy8I GTNNAC 4 cut(s) 94, 275, 412, 538
HpyAV CCTTC 4 cut(s) 179, 513, 653, 1298
HpyCH4IV ACGT 3 cut(s) 277, 682, 1225
HpyCH4V TGCA 8 cut(s) 4, 26, 208, 236, 247, 667, 1013, 1181
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1094
HpyF3I CTNAG 4 cut(s) 405, 945, 1050, 1203
HpySE526I ACGT 3 cut(s) 277, 682, 1225
Hsp92II CATG 2 cut(s) 125, 1214
HspAI GCGC 4 cut(s) 98, 367, 961, 963
KpnI GGTACC 2 cut(s) 218, 744
KspI CCGCGG 1 cut(s) 531
Kzo9I GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
LguI GCTCTTC 1 cut(s) 603
Lsp1109I GCAGC 4 cut(s) 220, 376, 763, 1025
LweI GCATC 4 cut(s) 163, 295, 1108, 1166
MaeI CTAG 3 cut(s) 485, 702, 1229
MaeII ACGT 3 cut(s) 277, 682, 1225
MaeIII GTNAC 3 cut(s) 82, 323, 1078
MalI GATC 6 cut(s) 570, 590, 597, 713, 996, 1320
MboI GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 4 cut(s) 287, 615, 989, 1003
MluCI AATT 5 cut(s) 151, 424, 622, 749, 980
MlyI GAGTC 5 cut(s) 20, 79, 193, 680, 1047
MmeI TCCRAC 1 cut(s) 1298
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1173
MseI TTAA 3 cut(s) 380, 735, 888
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 211, 530
MspI CCGG 2 cut(s) 603, 1042
MspR9I CCNGG 3 cut(s) 603, 1106, 1247
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 2 cut(s) 1106, 1247
MvnI CGCG 3 cut(s) 98, 530, 963
MwoI GCNNNNNNNGC 2 cut(s) 707, 1094
NciI CCSGG 1 cut(s) 603
NdeII GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
NlaIII CATG 2 cut(s) 125, 1214
NlaIV GGNNCC 3 cut(s) 216, 597, 742
NmuCI GTSAC 3 cut(s) 82, 323, 1078
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 815
PagI TCATGA 1 cut(s) 121
PauI GCGCGC 1 cut(s) 961
PceI AGGCCT 2 cut(s) 457, 1245
PciSI GCTCTTC 1 cut(s) 603
PctI GAATGC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 2 cut(s) 335, 896
PkrI GCNGC 8 cut(s) 210, 363, 366, 526, 529, 778, 937, 1015
PleI GAGTC 5 cut(s) 19, 79, 193, 679, 1046
PpsI GAGTC 5 cut(s) 19, 79, 193, 679, 1046
Psp124BI GAGCTC 2 cut(s) 615, 1003
Psp1406I AACGTT 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 1104, 1245
PspGI CCWGG 2 cut(s) 1104, 1245
PspN4I GGNNCC 3 cut(s) 216, 597, 742
PspPI GGNCC 3 cut(s) 500, 725, 1033
PsuI RGATCY 1 cut(s) 595
PteI GCGCGC 1 cut(s) 961
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 5 cut(s) 19, 117, 216, 742, 1128
RsaNI GTAC 5 cut(s) 18, 116, 215, 741, 1127
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 2 cut(s) 615, 1003
SacII CCGCGG 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 3 cut(s) 380, 735, 888
SatI GCNGC 8 cut(s) 209, 362, 365, 525, 528, 777, 936, 1014
Sau3AI GATC 6 cut(s) 568, 588, 595, 711, 994, 1318
Sau96I GGNCC 3 cut(s) 500, 725, 1033
SchI GAGTC 5 cut(s) 20, 79, 193, 680, 1047
ScrFI CCNGG 3 cut(s) 603, 1106, 1247
SduI GDGCHC 4 cut(s) 287, 615, 989, 1003
SfaNI GCATC 4 cut(s) 163, 295, 1108, 1166
Sfr303I CCGCGG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 815
SgrBI CCGCGG 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 1152
SmoI CTYRAG 1 cut(s) 1152
Sse9I AATT 5 cut(s) 151, 424, 622, 749, 980
SseBI AGGCCT 2 cut(s) 457, 1245
SsiI CCGC 7 cut(s) 320, 361, 525, 528, 530, 599, 936
SspMI CTAG 3 cut(s) 485, 702, 1229
SstI GAGCTC 2 cut(s) 615, 1003
StuI AGGCCT 2 cut(s) 457, 1245
StyD4I CCNGG 3 cut(s) 601, 1104, 1245
StyI CCWWGG 3 cut(s) 57, 780, 1029
TaiI ACGT 3 cut(s) 280, 685, 1228
TaqI TCGA 4 cut(s) 815, 846, 860, 997
TaqII GACCGA 1 cut(s) 1292
TasI AATT 5 cut(s) 151, 424, 622, 749, 980
TauI GCSGC 4 cut(s) 364, 527, 530, 938
TfiI GAWTC 2 cut(s) 335, 896
Tru1I TTAA 3 cut(s) 380, 735, 888
Tru9I TTAA 3 cut(s) 380, 735, 888
TscAI CASTG 2 cut(s) 87, 949
TseFI GTSAC 3 cut(s) 82, 323, 1078
TseI GCWGC 4 cut(s) 208, 364, 776, 1013
Tsp45I GTSAC 3 cut(s) 82, 323, 1078
TspDTI ATGAA 2 cut(s) 357, 828
TspGWI ACGGA 3 cut(s) 260, 1090, 1316
TspRI CASTG 2 cut(s) 87, 949
XapI RAATTY 1 cut(s) 622
XbaI TCTAGA 2 cut(s) 484, 1228
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 3 cut(s) 485, 702, 1229
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.