pycom420g00110

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0000179
Physical Location & Seq
Forward (+)
107260 .. 109074
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom420g00110.2

Sequence Viewer

Length: 882 bp
ATGTATTTATATGGAATCGAATCGTCACCGCACAACCATTGCACAGCCACTGCATTGCCTGCCTTCTTGCATCCCGACTGCCCTGCCCTGCAATCCTGCACTGCCGGTAACCGCACGCACTGCTTCCTTGCTACACTGCGTTCTCCACGTTTGCTGCCCGTTGAACTGGGTGCTAGACCAAAAAGGGTGGTTGCGAGCGTAGGTTTGAACTGCCAAGGCGAGTTGCTTTCCACTTCTTCAACCTTTGCAGCTTTCTGTGCTATTTGTGGGAGTTCAGTTGCTGTGGATGGGAAGGAGAGGAAGCAGTCACTTAGCAAGTTTCTTTGCATAGCGTTTGCTCTCAACACCATCACCATTCTTGCGAAGGAAAGTGATTTGCAGGATAAGGGAACAACGCTGAAGATTTACGCCCCACTGACTGGCCCTAAGGCACTTTCTCTTCCTACAAAAGACAACTCCATGCATATTAAGTCGTGGTCTTCTGAAGTATCTTGGGAGGTGGCAGACGTTGTTCGATCAAATACGGAGAAGAAGGCATGCACACTGAGGATTCTTATCTTGAACCCATCGCACCACGCTCGTGACAATCATCCAGCTTCGTTTAAGCTTCTTGGTGATCACATCCGCAGCGGAGCTATGGCTTGGAATGATGCCTTGTCGACTACCGGAGAAGCCGTTTTTGCTGAGTCTTATTGGGAGTGGCTTGAAGATGTCTTGGGCCGATCTAAACATGTGCTTACTACGATCTCCATCCTTCCGTCCTTCATGCATTCTTCGAGCATTGGTGTTCAGCGACTAACACGCCTAATACAGCTCAAGGAGAGATGTCAATTTCACTTTGGGATCGATCGACAAGATAGGGGGCTTGCAAATCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

294

Amino Acids

32.18

Weight (kDa)

8.92

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 1 cut(s) 659
AciI CCGC 4 cut(s) 29, 112, 625, 630
AclWI GGATC 1 cut(s) 851
AcuI CTGAAG 2 cut(s) 419, 504
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 5 cut(s) 164, 208, 240, 562, 707
AleI CACNNNNGTG 1 cut(s) 579
AluBI AGCT 5 cut(s) 251, 596, 607, 635, 814
AluI AGCT 5 cut(s) 251, 596, 607, 635, 814
AlwI GGATC 1 cut(s) 851
AlwNI CAGNNNCTG 2 cut(s) 50, 281
AoxI GGCC 2 cut(s) 421, 718
ApeKI GCWGC 3 cut(s) 154, 248, 627
AspS9I GGNCC 2 cut(s) 422, 718
AsuHPI GGTGA 3 cut(s) 18, 343, 626
AxyI CCTNAGG 1 cut(s) 426
BauI CACGAG 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 3 cut(s) 141, 260, 639
BccI CCATC 4 cut(s) 281, 356, 574, 758
BceAI ACGGC 1 cut(s) 659
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 560, 594
BclI TGATCA 1 cut(s) 616
BfaI CTAG 1 cut(s) 174
BisI GCNGC 3 cut(s) 155, 249, 628
BlsI GCNGC 3 cut(s) 156, 250, 629
BmgT120I GGNCC 2 cut(s) 422, 718
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 79, 640
BmuI ACTGGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 800
Bsa29I ATCGAT 1 cut(s) 846
BsaBI GATNNNNATC 2 cut(s) 554, 749
BsaJI CCNNGG 2 cut(s) 214, 875
BsaWI WCCGGW 1 cut(s) 665
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 171, 424
Bse21I CCTNAGG 1 cut(s) 426
Bse3DI GCAATG 2 cut(s) 37, 53
Bse8I GATNNNNATC 2 cut(s) 554, 749
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 214, 875
BseGI GGATG 5 cut(s) 70, 292, 589, 621, 750
BseJI GATNNNNATC 2 cut(s) 554, 749
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 2 cut(s) 37, 53
BseMII CTCAG 2 cut(s) 536, 675
BseNI ACTGG 2 cut(s) 171, 424
BseXI GCAGC 3 cut(s) 141, 260, 639
BsgI GTGCAG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 850
BshFI GGCC 2 cut(s) 423, 720
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 850
BsiSI CCGG 2 cut(s) 105, 666
BslI CCNNNNNNNGG 1 cut(s) 419
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 2 cut(s) 423, 720
Bsp143I GATC 6 cut(s) 515, 616, 722, 744, 843, 847
BspACI CCGC 4 cut(s) 29, 112, 625, 630
BspANI GGCC 2 cut(s) 423, 720
BspCNI CTCAG 2 cut(s) 537, 676
BspDI ATCGAT 1 cut(s) 846
BspPI GGATC 1 cut(s) 851
BsrDI GCAATG 2 cut(s) 37, 53
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 171, 424
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 214, 875
BssMI GATC 6 cut(s) 515, 616, 722, 744, 843, 847
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 214, 875
Bst2BI CACGAG 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 444
BstAPI GCANNNNNTGC 2 cut(s) 59, 120
BstC8I GCNNGC 5 cut(s) 60, 116, 196, 538, 867
BstDEI CTNAG 4 cut(s) 311, 426, 545, 684
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 5 cut(s) 70, 292, 589, 621, 750
BstKTI GATC 6 cut(s) 518, 619, 725, 747, 846, 850
BstMBI GATC 6 cut(s) 515, 616, 722, 744, 843, 847
BstMCI CGRYCG 1 cut(s) 850
BstMWI GCNNNNNNNGC 4 cut(s) 59, 120, 257, 680
BstNSI RCATGY 2 cut(s) 540, 734
BstPI GGTNACC 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 141, 260, 639
BstV2I GAAGAC 1 cut(s) 471
Bsu15I ATCGAT 1 cut(s) 846
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 423, 720
BsuTUI ATCGAT 1 cut(s) 846
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 5 cut(s) 70, 292, 589, 621, 750
BtsI GCAGTG 4 cut(s) 48, 99, 118, 134
BtsIMutI CAGTG 6 cut(s) 48, 99, 118, 134, 413, 542
Cac8I GCNNGC 5 cut(s) 60, 116, 196, 538, 867
CaiI CAGNNNCTG 2 cut(s) 50, 281
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 422, 718
ClaI ATCGAT 1 cut(s) 846
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 4 cut(s) 460, 537, 731, 766
DdeI CTNAG 4 cut(s) 311, 426, 545, 684
DpnI GATC 6 cut(s) 517, 618, 724, 746, 845, 849
DpnII GATC 6 cut(s) 515, 616, 722, 744, 843, 847
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 214, 875
Eco57I CTGAAG 2 cut(s) 419, 504
Eco81I CCTNAGG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 214, 875
EcoT22I ATGCAT 2 cut(s) 465, 771
ErhI CCWWGG 2 cut(s) 214, 875
FaeI CATG 4 cut(s) 463, 540, 734, 769
FaiI YATR 9 cut(s) 10, 12, 329, 461, 465, 538, 638, 732, 767
FatI CATG 4 cut(s) 459, 536, 730, 765
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 659
Fnu4HI GCNGC 3 cut(s) 155, 249, 628
FokI GGATG 5 cut(s) 57, 299, 576, 608, 737
Fsp4HI GCNGC 3 cut(s) 155, 249, 628
FspBI CTAG 1 cut(s) 174
GluI GCNGC 3 cut(s) 155, 249, 628
HaeIII GGCC 2 cut(s) 423, 720
HapII CCGG 2 cut(s) 105, 666
Hin1II CATG 4 cut(s) 463, 540, 734, 769
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 15, 20, 550, 686
HpaII CCGG 2 cut(s) 105, 666
HphI GGTGA 3 cut(s) 18, 343, 626
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 74, 559, 581
Hpy8I GTNNAC 1 cut(s) 660
HpyAV CCTTC 6 cut(s) 73, 286, 358, 526, 764, 772
HpyCH4IV ACGT 2 cut(s) 148, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 120, 257, 680
HpyF3I CTNAG 4 cut(s) 311, 426, 545, 684
HpySE526I ACGT 2 cut(s) 148, 507
Hsp92II CATG 4 cut(s) 463, 540, 734, 769
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 6 cut(s) 515, 616, 722, 744, 843, 847
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 3 cut(s) 141, 260, 639
LweI GCATC 2 cut(s) 79, 640
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 148, 507
MaeIII GTNAC 4 cut(s) 24, 107, 306, 581
MalI GATC 6 cut(s) 517, 618, 724, 746, 845, 849
MboI GATC 6 cut(s) 515, 616, 722, 744, 843, 847
MboII GAAGA 7 cut(s) 228, 412, 431, 471, 541, 719, 765
MluCI AATT 1 cut(s) 830
MlyI GAGTC 1 cut(s) 695
MnlI CCTC 3 cut(s) 291, 490, 540
Mph1103I ATGCAT 2 cut(s) 465, 771
MseI TTAA 2 cut(s) 468, 603
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 2 cut(s) 105, 666
Mva1269I GAATGC 1 cut(s) 769
MwoI GCNNNNNNNGC 4 cut(s) 59, 120, 257, 680
NdeII GATC 6 cut(s) 515, 616, 722, 744, 843, 847
NlaIII CATG 4 cut(s) 463, 540, 734, 769
NmuCI GTSAC 3 cut(s) 24, 306, 581
NsiI ATGCAT 2 cut(s) 465, 771
NspI RCATGY 2 cut(s) 540, 734
OliI CACNNNNGTG 1 cut(s) 579
PaeI GCATGC 1 cut(s) 540
PciI ACATGT 1 cut(s) 730
PctI GAATGC 1 cut(s) 769
PfeI GAWTC 3 cut(s) 15, 20, 550
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 3 cut(s) 156, 250, 629
Ple19I CGATCG 1 cut(s) 850
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PscI ACATGT 1 cut(s) 730
PspEI GGTNACC 1 cut(s) 107
PspPI GGNCC 2 cut(s) 422, 718
PstNI CAGNNNCTG 2 cut(s) 50, 281
PvuI CGATCG 1 cut(s) 850
RseI CAYNNNNRTG 1 cut(s) 579
SalI GTCGAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 468, 603
SatI GCNGC 3 cut(s) 155, 249, 628
Sau3AI GATC 6 cut(s) 515, 616, 722, 744, 843, 847
Sau96I GGNCC 2 cut(s) 422, 718
SchI GAGTC 1 cut(s) 695
SfaNI GCATC 2 cut(s) 79, 640
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
SphI GCATGC 1 cut(s) 540
Sse9I AATT 1 cut(s) 830
SsiI CCGC 4 cut(s) 29, 112, 625, 630
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 214, 875
TaiI ACGT 2 cut(s) 151, 510
TaqI TCGA 6 cut(s) 18, 514, 659, 776, 846, 850
TasI AATT 1 cut(s) 830
TfiI GAWTC 3 cut(s) 15, 20, 550
Tru1I TTAA 2 cut(s) 468, 603
Tru9I TTAA 2 cut(s) 468, 603
TscAI CASTG 6 cut(s) 55, 106, 125, 141, 420, 549
TseFI GTSAC 3 cut(s) 24, 306, 581
TseI GCWGC 3 cut(s) 154, 248, 627
Tsp45I GTSAC 3 cut(s) 24, 306, 581
TspDTI ATGAA 1 cut(s) 754
TspGWI ACGGA 2 cut(s) 539, 747
TspRI CASTG 6 cut(s) 55, 106, 125, 141, 420, 549
Van91I CCANNNNNTGG 1 cut(s) 419
XceI RCATGY 2 cut(s) 540, 734
XmiI GTMKAC 1 cut(s) 659
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 2 cut(s) 465, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.