Rmu_sc0033137.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033137.1
OG0000179
Physical Location & Seq
Forward (+)
1 .. 854
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033137.1_g000001.1.cds

Sequence Viewer

Length: 545 bp
gcacttgcgatcgcattttccgtccgtttgtggccatggccttcttcaagtgcttcaagaaagggacagtcaccatcctcaaggacccggaggacgctcaaagtgatggaactactctgcaagtgcacccatcgttgactgggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccagtggactcatgtgcttactcgggaggccggtctctatcgagcaatattcacctcactattcagctatgaccgtgttgcatctatcatacgggctttctgcgagtactggtgccccgcgacgaatactctccacacatctagcggagaaatgtccatctccctctgggatttggaccaactcggaggtttgcccattgctggacggttttatgatgaggtggttccagctgctgaagagcttactgtagcaagcaaagggagtcaacagagctgccgctatttgtttctcgcctaccataagctttgcaaagaaggccaagggcagaaggtgaagataacttcatggatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

180

Amino Acids

20.14

Weight (kDa)

6.47

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 310
AciI CCGC 3 cut(s) 308, 335, 468
AcoI YGGCCR 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 161, 446
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 48, 57
AluBI AGCT 6 cut(s) 181, 257, 421, 432, 464, 495
AluI AGCT 6 cut(s) 181, 257, 421, 432, 464, 495
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 5 cut(s) 32, 38, 142, 218, 507
ApaLI GTGCAC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 421, 464
AsiSI GCGATCGC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 84, 142, 366
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 3 cut(s) 63, 234, 534
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 84, 366
BaeGI GKGCMC 2 cut(s) 128, 307
BalI TGGCCA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 408, 451
BccI CCATC 4 cut(s) 82, 100, 138, 355
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 437
BisI GCNGC 3 cut(s) 422, 465, 468
BlsI GCNGC 3 cut(s) 423, 466, 469
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 84, 366
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 84, 142, 366
BmiI GGNNCC 3 cut(s) 86, 304, 416
BmrFI CCNGG 1 cut(s) 88
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 64, 131
BpuMI CCSGG 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 35, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 3 cut(s) 144, 192, 304
Bse3DI GCAATG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 35, 510
BseGI GGATG 2 cut(s) 74, 185
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMI GCAATG 1 cut(s) 386
BseNI ACTGG 3 cut(s) 144, 192, 304
BseSI GKGCMC 2 cut(s) 128, 307
BseXI GCAGC 2 cut(s) 408, 451
Bsh1236I CGCG 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 5 cut(s) 34, 40, 144, 220, 509
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 155
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 88, 221
BslFI GGGAC 2 cut(s) 78, 145
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 78, 145
BsnI GGCC 5 cut(s) 34, 40, 144, 220, 509
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 128, 307
Bsp143I GATC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 3 cut(s) 308, 335, 468
BspANI GGCC 5 cut(s) 34, 40, 144, 220, 509
BspDI ATCGAT 1 cut(s) 155
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 86, 304, 416
BspQI GCTCTTC 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 3 cut(s) 144, 192, 304
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 35, 510
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 35, 510
Bst4CI ACNGT 4 cut(s) 69, 265, 398, 438
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 74, 185
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 437
BstSLI GKGCMC 2 cut(s) 128, 307
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 408, 451
Bsu15I ATCGAT 1 cut(s) 155
BsuRI GGCC 5 cut(s) 34, 40, 144, 220, 509
BsuTUI ATCGAT 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 74, 185
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 84, 142, 366
ClaI ATCGAT 1 cut(s) 155
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 297
CviAII CATG 3 cut(s) 36, 202, 536
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco130I CCWWGG 2 cut(s) 35, 510
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 84, 366
Eco57I CTGAAG 2 cut(s) 161, 446
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 35, 510
ErhI CCWWGG 2 cut(s) 35, 510
FaeI CATG 3 cut(s) 39, 205, 539
FaiI YATR 9 cut(s) 37, 170, 203, 260, 280, 404, 491, 537, 543
FaqI GGGAC 2 cut(s) 78, 145
FatI CATG 3 cut(s) 35, 201, 535
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 3 cut(s) 422, 465, 468
FokI GGATG 2 cut(s) 61, 172
Fsp4HI GCNGC 3 cut(s) 422, 465, 468
FspBI CTAG 1 cut(s) 332
GluI GCNGC 3 cut(s) 422, 465, 468
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 5 cut(s) 34, 40, 144, 220, 509
HapII CCGG 2 cut(s) 88, 221
HgaI GACGC 1 cut(s) 103
Hin1II CATG 3 cut(s) 39, 205, 539
HincII GTYRAC 2 cut(s) 137, 457
HindII GTYRAC 2 cut(s) 137, 457
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 2 cut(s) 198, 453
HpaII CCGG 2 cut(s) 88, 221
HphI GGTGA 3 cut(s) 63, 234, 534
Hpy166II GTNNAC 4 cut(s) 126, 137, 197, 457
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 57, 214
Hpy8I GTNNAC 4 cut(s) 126, 137, 197, 457
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 4 cut(s) 51, 185, 499, 513
HpyCH4III ACNGT 4 cut(s) 69, 265, 398, 438
HpyCH4V TGCA 4 cut(s) 120, 126, 271, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
Hsp92II CATG 3 cut(s) 39, 205, 539
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 422
LpnPI CCDG 8 cut(s) 101, 125, 205, 234, 285, 342, 377, 431
Lsp1109I GCAGC 2 cut(s) 408, 451
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 36, 439, 537
MhlI GDGCHC 2 cut(s) 128, 307
MlsI TGGCCA 1 cut(s) 34
MluNI TGGCCA 1 cut(s) 34
MlyI GAGTC 2 cut(s) 192, 462
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 34
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 2 cut(s) 88, 221
MspR9I CCNGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 35
NdeII GATC 1 cut(s) 9
NlaIII CATG 3 cut(s) 39, 205, 539
NlaIV GGNNCC 3 cut(s) 86, 304, 416
NmuCI GTSAC 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 3 cut(s) 423, 466, 469
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 2 cut(s) 192, 461
PpsI GAGTC 2 cut(s) 192, 461
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 86, 304, 416
PspPI GGNCC 3 cut(s) 84, 142, 366
PspPPI RGGWCCY 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 424
PvuI CGATCG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 421
RgaI GCGATCGC 1 cut(s) 12
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 422
SatI GCNGC 3 cut(s) 422, 465, 468
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 3 cut(s) 84, 142, 366
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 2 cut(s) 192, 462
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 128, 307
SfaAI GCGATCGC 1 cut(s) 12
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 437
SgfI GCGATCGC 1 cut(s) 12
SinI GGWCC 2 cut(s) 84, 366
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 79, 146
SmoI CTYRAG 2 cut(s) 79, 146
SsiI CCGC 3 cut(s) 308, 335, 468
SspI AATATT 1 cut(s) 239
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 35, 510
TaaI ACNGT 4 cut(s) 69, 265, 398, 438
TaqI TCGA 2 cut(s) 155, 231
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 470
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 2 cut(s) 421, 464
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 524
TspGWI ACGGA 2 cut(s) 10, 14
TspRI CASTG 1 cut(s) 199
VneI GTGCAC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 84, 366
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.