Rmu_sc0003412.1_g000016

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003412.1
OG0000179
Physical Location & Seq
Forward (+)
88394 .. 88960
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003412.1_g000016.1.cds

Sequence Viewer

Length: 567 bp
atggacactaactgtgaggtaacgttgccgatccagagtgctatcacggagtatatggttacccgagactatgttgattggtggtctaaagtgtatcattctacaccagtgaagacaacgagagtagcgcctactagtagaaccctgcacaagcctctaaaagcaaaagaagacaaggacgtcaaccgcgctgtgcctcgtcgccagaatgtgattgcttgtgaagtcgaatgtagcaccaacgtccctgcgcttccagatagggcttcgctcccagataaggaccgtcaggctcatccagtcgacattctagaagatgatggagactctttagattctcacgtcgcttttatccgtccacttaagctgaaaagaccagtcatcaaagaaagaaggcgtagtggaagcagcggtagcaatgatagtgaagtgcactttaagcgtcgaaaaactgacaccagccttggccctacttattgtgatcccaatgctgagttcactctgaatactgactttcttggtgacatctcaacttctcgcaaccgatgctgcagcgaaatgaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

8.21

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 411
AclI AACGTT 1 cut(s) 23
AclWI GGATC 2 cut(s) 25, 476
AcyI GRCGYC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 280
AflII CTTAAG 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 134
AjiI CACGTC 1 cut(s) 343
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 2 cut(s) 60, 318
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 2 cut(s) 25, 476
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 466
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 3 cut(s) 408, 549, 552
AspLEI GCGC 3 cut(s) 130, 191, 253
AspS9I GGNCC 2 cut(s) 283, 467
AsuHPI GGTGA 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 119, 177
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 420, 536
BccI CCATC 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 60, 318
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 311
BfmI CTRYAG 1 cut(s) 550
BfoI RGCGCY 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 3 cut(s) 409, 550, 553
BlsI GCNGC 3 cut(s) 410, 551, 554
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 283, 467
BmsI GCATC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 119, 177
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 463
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 107, 299, 377
Bse3DI GCAATG 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 3 cut(s) 107, 299, 377
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 2 cut(s) 420, 536
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 2 cut(s) 60, 318
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 468
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 2 cut(s) 30, 481
BspACI CCGC 2 cut(s) 187, 411
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 189
BspMAI CTGCAG 1 cut(s) 554
BspPI GGATC 2 cut(s) 25, 476
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 424
BsrI ACTGG 3 cut(s) 107, 299, 377
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 2 cut(s) 30, 481
BssNI GRCGYC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 14, 287
BstACI GRCGYC 1 cut(s) 180
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 546
BstDEI CTNAG 1 cut(s) 492
BstEII GGTNACC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 3 cut(s) 130, 191, 253
BstKTI GATC 2 cut(s) 33, 484
BstMAI GTCTC 2 cut(s) 60, 318
BstMBI GATC 2 cut(s) 30, 481
BstMWI GCNNNNNNNGC 3 cut(s) 414, 439, 546
BstPI GGTNACC 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 420, 536
BstV2I GAAGAC 2 cut(s) 119, 177
BsuRI GGCC 1 cut(s) 468
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 114
CfoI GCGC 3 cut(s) 130, 191, 253
Cfr13I GGNCC 2 cut(s) 283, 467
CseI GACGC 1 cut(s) 431
CviJI RGCY 6 cut(s) 154, 266, 293, 367, 462, 468
CviKI_1 RGCY 6 cut(s) 154, 266, 293, 367, 462, 468
DdeI CTNAG 1 cut(s) 492
DpnI GATC 2 cut(s) 32, 483
DpnII GATC 2 cut(s) 30, 481
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaiI YATR 3 cut(s) 54, 56, 72
FaqI GGGAC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 409, 550, 553
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 3 cut(s) 409, 550, 553
FspBI CTAG 2 cut(s) 135, 311
GlaI GCGC 3 cut(s) 129, 190, 252
GluI GCNGC 3 cut(s) 409, 550, 553
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 468
HgaI GACGC 1 cut(s) 431
HhaI GCGC 3 cut(s) 130, 191, 253
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 3 cut(s) 128, 189, 251
HinP1I GCGC 3 cut(s) 128, 189, 251
HincII GTYRAC 2 cut(s) 184, 304
HindII GTYRAC 2 cut(s) 184, 304
HinfI GANTC 2 cut(s) 326, 335
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 5 cut(s) 184, 304, 359, 433, 498
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 3 cut(s) 34, 257, 311
Hpy8I GTNNAC 5 cut(s) 184, 304, 359, 433, 498
Hpy99I CGWCG 3 cut(s) 204, 347, 447
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 2 cut(s) 14, 287
HpyCH4IV ACGT 4 cut(s) 23, 180, 243, 342
HpyCH4V TGCA 3 cut(s) 148, 433, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 439, 546
HpyF3I CTNAG 1 cut(s) 492
HpySE526I ACGT 4 cut(s) 23, 180, 243, 342
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 3 cut(s) 128, 189, 251
Kzo9I GATC 2 cut(s) 30, 481
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 420, 536
LweI GCATC 1 cut(s) 536
MaeI CTAG 2 cut(s) 135, 311
MaeII ACGT 4 cut(s) 23, 180, 243, 342
MaeIII GTNAC 3 cut(s) 19, 58, 521
MalI GATC 2 cut(s) 32, 483
MboI GATC 2 cut(s) 30, 481
MboII GAAGA 3 cut(s) 124, 182, 326
MhlI GDGCHC 1 cut(s) 435
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 4 cut(s) 10, 165, 207, 555
MseI TTAA 2 cut(s) 363, 438
MspA1I CMGCKG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 362
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 414, 439, 546
NdeII GATC 2 cut(s) 30, 481
NmuCI GTSAC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 410, 551, 554
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp1406I AACGTT 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 283, 467
PstI CTGCAG 1 cut(s) 554
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 363, 438
SatI GCNGC 3 cut(s) 409, 550, 553
Sau3AI GATC 2 cut(s) 30, 481
Sau96I GGNCC 2 cut(s) 283, 467
SchI GAGTC 1 cut(s) 320
SduI GDGCHC 1 cut(s) 435
SetI ASST 7 cut(s) 21, 26, 183, 246, 345, 369, 566
SfaNI GCATC 1 cut(s) 536
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SpeI ACTAGT 1 cut(s) 134
SsiI CCGC 2 cut(s) 187, 411
SspMI CTAG 2 cut(s) 135, 311
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 14, 287
TaiI ACGT 4 cut(s) 26, 183, 246, 345
TaqI TCGA 3 cut(s) 228, 303, 445
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 363, 438
Tru9I TTAA 2 cut(s) 363, 438
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 3 cut(s) 408, 549, 552
Tsp45I GTSAC 1 cut(s) 521
TspGWI ACGGA 2 cut(s) 62, 344
TspRI CASTG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 2 cut(s) 135, 311
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.