Rmu_sc0003641.1_g000025

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003641.1
Physical Location & Seq
Reverse (-)
98924 .. 99226
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003641.1_g000025.1.cds

Sequence Viewer

Length: 303 bp
atggttactttggagttcaaaaaccaaaggctatcccatgttgaatccaccattgcagatgcttcatctactcgctcagctaatgctagccgccgtcattccctacttgcatctttggaaaaattaaaacaggagcaacaacaattggagatgcaattgatacaactcgatgcagagctttcgaatcatgataacaagattgctagcctaaagaaagagaagattaaagtgtcagaacttcccgttatgccccctaccgatatgacgacactagttaccatggagaagtctctcgaggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

5.91

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AgsI TTSAA 2 cut(s) 19, 44
AhlI ACTAGT 1 cut(s) 271
AluBI AGCT 2 cut(s) 80, 178
AluI AGCT 2 cut(s) 80, 178
Alw26I GTCTC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 182
AsuNHI GCTAGC 2 cut(s) 86, 203
AvaI CYCGRG 1 cut(s) 293
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BcoDI GTCTC 1 cut(s) 294
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 87, 204, 272
BisI GCNGC 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 293
BmsI GCATC 4 cut(s) 49, 119, 141, 160
BmtI GCTAGC 2 cut(s) 90, 207
Bpu1102I GCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 182
Bsp1720I GCTNAGC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 187
BspOI GCTAGC 2 cut(s) 90, 207
BspT104I TTCGAA 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 88, 205
BstDEI CTNAG 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 88, 205
CciI TCATGA 1 cut(s) 187
CviAII CATG 3 cut(s) 38, 188, 280
CviJI RGCY 5 cut(s) 31, 80, 90, 178, 207
CviKI_1 RGCY 5 cut(s) 31, 80, 90, 178, 207
DdeI CTNAG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 41, 191, 283
FaiI YATR 5 cut(s) 39, 189, 248, 263, 281
FatI CATG 3 cut(s) 37, 187, 279
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 3 cut(s) 87, 204, 272
GluI GCNGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 41, 191, 283
HinfI GANTC 2 cut(s) 44, 184
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 188, 293
HpyCH4V TGCA 4 cut(s) 56, 110, 154, 173
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 3 cut(s) 41, 191, 283
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 116
LweI GCATC 4 cut(s) 49, 119, 141, 160
MaeI CTAG 3 cut(s) 87, 204, 272
MaeIII GTNAC 2 cut(s) 4, 274
MboII GAAGA 1 cut(s) 232
MfeI CAATTG 2 cut(s) 143, 155
MluCI AATT 3 cut(s) 122, 143, 155
MnlI CCTC 1 cut(s) 289
MseI TTAA 3 cut(s) 125, 225, 301
MunI CAATTG 2 cut(s) 143, 155
NcoI CCATGG 1 cut(s) 279
NheI GCTAGC 2 cut(s) 86, 203
NlaIII CATG 3 cut(s) 41, 191, 283
NspV TTCGAA 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 187
PfeI GAWTC 2 cut(s) 44, 184
PkrI GCNGC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 125, 225, 301
SatI GCNGC 1 cut(s) 91
SetI ASST 2 cut(s) 82, 180
SfaNI GCATC 4 cut(s) 49, 119, 141, 160
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 1 cut(s) 182
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 3 cut(s) 122, 143, 155
SsiI CCGC 1 cut(s) 91
SspMI CTAG 3 cut(s) 87, 204, 272
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 3 cut(s) 168, 182, 294
TasI AATT 3 cut(s) 122, 143, 155
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 44, 184
Tru1I TTAA 3 cut(s) 125, 225, 301
Tru9I TTAA 3 cut(s) 125, 225, 301
TspDTI ATGAA 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 3 cut(s) 87, 204, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.