Rmu_sc0006175.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006175.1
OG0000179
Physical Location & Seq
Forward (+)
21116 .. 22006
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006175.1_g000006.1.cds

Sequence Viewer

Length: 891 bp
ctgcaagtgcacccatcgttgactgggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccaatggactcatgtggtacctcgccagctggctatgtttcgacaaccgagatctggaagagaccaacaaaactcgcatgtactgttgctaaagtcttcgcatcatgatcagaacactcttcagaccccattcaagcttctcagcgatcgtgtacgcaacggttcagtgaagtggagcaatgcatttcgtgcaaacgagggcttctcttacacagaattttactgggaatgggtagaagatatcttgagcaagaatgacaagcttactcgggagtccggtctctatcgagcgatattcacctcactattcagctatgaccgtgttgcatctgtcatacgggctttctgccagtactggtgccccgcgacgaatactgtccacacatctatcggagaaatgttcatctccctctgggatttggaccaactcggaggtttgcccattgctggactattttatgatgaggtggttctagctgctgaagagcttactgtagcaaggaaacagagtcaacagagctgccgctatttgtttctcgcctaccataaggtttgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctataagaggcctccaaacaaaagcaccatgaacaaaagagatcctccccagaatgtgtttaatccatctggcaggatccatgagatccgaccacgtacttctacagacctcgcagtatttgatgacttaggcattgagagtggagatgtagagcccacctatttggctgcctttcttgcttgttggttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

296

Amino Acids

34.12

Weight (kDa)

8.89

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 2 cut(s) 91, 432
AccII CGCG 1 cut(s) 440
AciI CCGC 2 cut(s) 438, 598
AclWI GGATC 4 cut(s) 734, 769, 778, 782
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 3 cut(s) 45, 179, 576
AfaI GTAC 5 cut(s) 93, 156, 228, 428, 796
AfiI CCNNNNNNNGG 2 cut(s) 128, 521
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 9 cut(s) 65, 103, 211, 337, 387, 551, 562, 594, 692
AluI AGCT 9 cut(s) 65, 103, 211, 337, 387, 551, 562, 594, 692
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 129, 359
Alw44I GTGCAC 1 cut(s) 8
AlwI GGATC 4 cut(s) 734, 769, 778, 782
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 26, 637, 707
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 551, 594, 866
ApoI RAATTY 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 26, 496
AsuHPI GGTGA 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 496
BaeGI GKGCMC 2 cut(s) 12, 437
BamHI GGATCC 1 cut(s) 774
BanI GGYRCC 2 cut(s) 91, 432
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 538, 581, 853
BccI CCATC 2 cut(s) 22, 772
BciVI GTATCC 1 cut(s) 663
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 129, 359
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 567, 801
BfuI GTATCC 1 cut(s) 663
BglII AGATCT 1 cut(s) 125
BisI GCNGC 4 cut(s) 552, 595, 598, 867
BlsI GCNGC 4 cut(s) 553, 596, 599, 868
BmcAI AGTACT 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 26, 496
BmiI GGNNCC 3 cut(s) 93, 434, 776
BmrI ACTGGG 2 cut(s) 33, 307
BmsI GCATC 2 cut(s) 184, 410
BmuI ACTGGG 2 cut(s) 33, 307
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpuEI CTTGAG 2 cut(s) 15, 340
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 794
BsaI GGTCTC 2 cut(s) 129, 359
BsaJI CCNNGG 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 521
Bse1I ACTGG 4 cut(s) 28, 302, 424, 434
Bse3DI GCAATG 2 cut(s) 259, 516
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 640
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 128, 521
BseMI GCAATG 2 cut(s) 259, 516
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 4 cut(s) 28, 302, 424, 434
BseRI GAGGAG 1 cut(s) 702
BseSI GKGCMC 2 cut(s) 12, 437
BseXI GCAGC 3 cut(s) 538, 581, 853
Bsh1236I CGCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 28, 639, 709
BshNI GGYRCC 2 cut(s) 91, 432
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 128, 521
BsmAI GTCTC 2 cut(s) 129, 359
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 3 cut(s) 28, 639, 709
Bso31I GGTCTC 2 cut(s) 129, 359
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 3 cut(s) 12, 437, 855
Bsp143I GATC 6 cut(s) 125, 181, 220, 739, 774, 783
BspACI CCGC 2 cut(s) 438, 598
BspANI GGCC 3 cut(s) 28, 639, 709
BspCNI CTCAG 1 cut(s) 228
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 1 cut(s) 440
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 93, 434, 776
BspPI GGATC 4 cut(s) 734, 769, 778, 782
BspQI GCTCTTC 1 cut(s) 552
BspT107I GGYRCC 2 cut(s) 91, 432
BspTNI GGTCTC 2 cut(s) 129, 359
BsrDI GCAATG 2 cut(s) 259, 516
BsrI ACTGG 4 cut(s) 28, 302, 424, 434
BssECI CCNNGG 1 cut(s) 640
BssMI GATC 6 cut(s) 125, 181, 220, 739, 774, 783
BssT1I CCWWGG 1 cut(s) 640
Bst4CI ACNGT 5 cut(s) 159, 236, 395, 451, 568
Bst6I CTCTTC 3 cut(s) 127, 198, 552
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 101, 105
BstDEI CTNAG 2 cut(s) 215, 826
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 6 cut(s) 128, 184, 223, 742, 777, 786
BstMAI GTCTC 2 cut(s) 129, 359
BstMBI GATC 6 cut(s) 125, 181, 220, 739, 774, 783
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 263, 636, 875
BstNSI RCATGY 1 cut(s) 155
BstSFI CTRYAG 2 cut(s) 567, 801
BstSLI GKGCMC 2 cut(s) 12, 437
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 3 cut(s) 538, 581, 853
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 4 cut(s) 125, 739, 774, 783
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 4 cut(s) 125, 739, 774, 783
Bsu15I ATCGAT 1 cut(s) 39
BsuI GTATCC 1 cut(s) 663
BsuRI GGCC 3 cut(s) 28, 639, 709
BsuTUI ATCGAT 1 cut(s) 39
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 101, 105
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 699
Cfr13I GGNCC 2 cut(s) 26, 496
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 5 cut(s) 92, 155, 227, 427, 795
CviAII CATG 6 cut(s) 86, 152, 179, 666, 727, 779
CviQI GTAC 5 cut(s) 92, 155, 227, 427, 795
DdeI CTNAG 2 cut(s) 215, 826
DpnI GATC 6 cut(s) 127, 183, 222, 741, 776, 785
DpnII GATC 6 cut(s) 125, 181, 220, 739, 774, 783
Eam1104I CTCTTC 3 cut(s) 127, 198, 552
EarI CTCTTC 3 cut(s) 127, 198, 552
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 2 cut(s) 129, 359
Eco32I GATATC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 3 cut(s) 45, 179, 576
Eco88I CYCGRG 1 cut(s) 342
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 6 cut(s) 89, 155, 182, 669, 730, 782
FaqI GGGAC 1 cut(s) 29
FatI CATG 6 cut(s) 85, 151, 178, 665, 726, 778
FauI CCCGC 1 cut(s) 445
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 552, 595, 598, 867
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 4 cut(s) 552, 595, 598, 867
FspBI CTAG 1 cut(s) 548
GlaI GCGC 1 cut(s) 698
GluI GCNGC 4 cut(s) 552, 595, 598, 867
HaeIII GGCC 3 cut(s) 28, 639, 709
HapII CCGG 1 cut(s) 351
HhaI GCGC 1 cut(s) 699
Hin1II CATG 6 cut(s) 89, 155, 182, 669, 730, 782
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HincII GTYRAC 2 cut(s) 21, 587
HindII GTYRAC 2 cut(s) 21, 587
HindIII AAGCTT 2 cut(s) 209, 335
HinfI GANTC 3 cut(s) 82, 347, 583
HpaII CCGG 1 cut(s) 351
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 5 cut(s) 10, 21, 227, 454, 587
Hpy188I TCNGA 5 cut(s) 186, 198, 467, 506, 788
Hpy188III TCNNGA 4 cut(s) 129, 179, 319, 344
Hpy8I GTNNAC 5 cut(s) 10, 21, 227, 454, 587
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 69, 629
HpyCH4III ACNGT 5 cut(s) 159, 236, 395, 451, 568
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 6 cut(s) 4, 10, 257, 266, 401, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 636, 875
HpyF3I CTNAG 2 cut(s) 215, 826
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 6 cut(s) 89, 155, 182, 669, 730, 782
HspAI GCGC 1 cut(s) 697
KpnI GGTACC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 6 cut(s) 125, 181, 220, 739, 774, 783
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 249, 689
Lsp1109I GCAGC 3 cut(s) 538, 581, 853
LweI GCATC 2 cut(s) 184, 410
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 793
MalI GATC 6 cut(s) 127, 183, 222, 741, 776, 785
MboI GATC 6 cut(s) 125, 181, 220, 739, 774, 783
MboII GAAGA 6 cut(s) 144, 162, 185, 323, 569, 667
MflI RGATCY 4 cut(s) 125, 739, 774, 783
MhlI GDGCHC 3 cut(s) 12, 437, 855
MluCI AATT 1 cut(s) 290
MlyI GAGTC 3 cut(s) 76, 356, 592
MmeI TCCRAC 1 cut(s) 811
Mph1103I ATGCAT 1 cut(s) 259
MseI TTAA 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 263, 636, 875
NdeII GATC 6 cut(s) 125, 181, 220, 739, 774, 783
NlaIII CATG 6 cut(s) 89, 155, 182, 669, 730, 782
NlaIV GGNNCC 3 cut(s) 93, 434, 776
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 155
PagI TCATGA 1 cut(s) 178
PceI AGGCCT 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 552
PkrI GCNGC 4 cut(s) 553, 596, 599, 868
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 3 cut(s) 76, 355, 591
PpsI GAGTC 3 cut(s) 76, 355, 591
Ppu21I YACGTR 1 cut(s) 794
PspN4I GGNNCC 3 cut(s) 93, 434, 776
PspPI GGNCC 2 cut(s) 26, 496
PsuI RGATCY 4 cut(s) 125, 739, 774, 783
PvuI CGATCG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 103
RsaI GTAC 5 cut(s) 93, 156, 228, 428, 796
RsaNI GTAC 5 cut(s) 92, 155, 227, 427, 795
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 4 cut(s) 552, 595, 598, 867
Sau3AI GATC 6 cut(s) 125, 181, 220, 739, 774, 783
Sau96I GGNCC 2 cut(s) 26, 496
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 3 cut(s) 76, 356, 592
SduI GDGCHC 3 cut(s) 12, 437, 855
SfaNI GCATC 2 cut(s) 184, 410
SfcI CTRYAG 2 cut(s) 567, 801
SinI GGWCC 1 cut(s) 496
SmlI CTYRAG 2 cut(s) 30, 319
SmoI CTYRAG 2 cut(s) 30, 319
Sse9I AATT 1 cut(s) 290
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 2 cut(s) 438, 598
SspMI CTAG 1 cut(s) 548
StuI AGGCCT 1 cut(s) 709
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 5 cut(s) 159, 236, 395, 451, 568
TaiI ACGT 1 cut(s) 796
TaqI TCGA 3 cut(s) 39, 115, 361
TasI AATT 1 cut(s) 290
TatI WGTACW 2 cut(s) 154, 426
TauI GCSGC 1 cut(s) 600
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TscAI CASTG 1 cut(s) 246
TseI GCWGC 3 cut(s) 551, 594, 866
TspDTI ATGAA 3 cut(s) 466, 654, 743
TspRI CASTG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 1 cut(s) 290
XceI RCATGY 1 cut(s) 155
XspI CTAG 1 cut(s) 548
ZrmI AGTACT 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.