Rmu_sc0013028.1_g000015

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013028.1
OG0000179
Physical Location & Seq
Reverse (-)
53677 .. 58465
4789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013028.1_g000015.1.cds

Sequence Viewer

Length: 2874 bp
atgaagaagaagttccagttcatcaacccacatctgggctctagatctgctttctgcgtcgaagaggacgaaggcgatgaagaagacactgcaagatctttcaaaactatgttcccaaaaggttgtagaaaatgctttgtgattgctgataggccatcgaggagaagaacgaacgttaggctttgcatatttgttgacaccaatgagaagaacatgaacgtcctaaacgcttggattcctccacctttgcttgtgggtccactgaaagaggttaggcttcgcgtgtttggtggctcatggagagaagaacgcggacgtcctaaacgcttggattcctccacatttgtgcgcgctcacatcctccagtggactcatgtggtacctcgccagctagctatgtttcgacaaccgagatatggcagagaccaacaaaactcgcatgtactgttgcttaagtcttcgcatcatgatcagaacaatcctcaagtgccattcactcttctcagcgatcgtgtacgcaacggttcagtgaagtggagtagtgcatttcgtgcaaatgggggcttatcttacacagaattctactgggaatgggtagaagatatcttaagcaagaatggcaagcttactcgggaggctggtttctatcgagcgatattcgcctcactattcagctatgaccgtgttgcacctgtcatacgggctttctgcgagtattggtgccccatgactaataccctccacacttctagcggggaaatgtccatctccctctgggatttggaccaacttggaggttttcccattgctagacgattttatgatgaagttgttccagctgctgaagagctttctacaacaagcaaagggagtcaacagagctgccgctatttgtttctcgcctaccataagctctgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggatccatgagatccgacaacgtacttctgcagacctcgcagtatttgatgacttaggcattgagagtgaagatgtagaacccacctatttggctgcctttcttacttgttggttgtgtctatttgttttacccatagacgacactggtttgattcgtccgggagtattcaaagttggcagcaaaatgtcacagggtgtacagttttgcttagcagtaccagtgttggccaacatctatcagggtttaggtgagatttttgtttctagcaatccaggtaactgctcggctgtccttccttttcattatatttatgcatggctagcagagtactttggcacccactttcagtctcctcttctcaatgacctaaagccctgtatggttcgcttctccggagaattttcacctaaacattgtggggactcacatgcgctttctttgttcaatgcatgtgataatatgaggatggatgcatttgccagggtattttcagagagcagagtgattatcaaccgtgagaacatctcccatttagacctcatatatctcatcaatcttcgatctgggtatctttctctcagacaggataaccgacgagtcattcagctatacaatccacatcggcttagtcgacagtttggttatgtccaagacattcctggtagcctgaagaatgacatttgcaccagcgtgtgggctttgatttacaagcattgggattcttgcaccagaatgaacaccaggtgcatggtaacgttgccgatccagagtcctatcacggagtacatggttactagagactatgtcgattggtggtctaaagtgtaccattctacaccagtgaaggcaacgaaagaagcacttactagtagaccactgcacaagactctgaaagcaaaagaagatcagaacgtcacccgtgcaacaccgcctcatcacaaaaatgtgattcctcgtgaagttgaatgtagcaccaacatccctgcacctcctaataggactttgcttcctagtagtgattgccagactcatctactcaacactctagaagatgatgatgactctttagattctcacattgctttggctcatccacctaagttgaaaagacttgccatcaaagaaagaatagtgaagtgcactttaagcgtcggaaaactgacaccagtcttggccctatttataggtgcagagattgatggtcattcactttgggggaacgatgacgcctcttcagaccttatacgtccacttaccaaggtgcatcctcctaagcctctgaacaccatagccttttctgaggcatctcttggtggagctgctattatagatgctagccaaagacttcgtgatatccgtcaacaagctgctaccgcagtttgtgaacaaattgaagatatgataatgaagcactcctcaaagagaattctttccaacaagggggaacttgacaagctgatagcggagcttagcctttatgcgattgatccttcatccgtaagggacaaagtcgaaagattgttgactagtgctgaccaatacaacttggcacgacttacttgttcacgcaaggctactccaagcacacgcaatcaacgtctggctgacacagaatcagaaattgcaaaggtcatttcaattcgtcaagctgactctaatcatcgccaatctgcactcaagtctttagagaaattaaaagaggagcaaagaaaattggagcaaacagtgactttactagacgagaaacttctactacaggagagtaagcttgtcgacctagaaaaagagaagactaaaatccaagagacccccgaggtgaccactgcagagcctgagacgacaaaatcattgcgagatacttttgagaaccaccgcaatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

957

Amino Acids

109.13

Weight (kDa)

8.77

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 319
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 3 cut(s) 379, 720, 1304
AccB7I CCANNNNNTGG 1 cut(s) 1662
AccI GTMKAC 3 cut(s) 1600, 1840, 2742
AccII CGCG 3 cut(s) 282, 312, 351
AccIII TCCGGA 1 cut(s) 1361
AciI CCGC 7 cut(s) 312, 753, 886, 1898, 2343, 2432, 2842
AclI AACGTT 2 cut(s) 174, 1724
AclWI GGATC 5 cut(s) 964, 973, 977, 1726, 2450
AcoI YGGCCR 1 cut(s) 1194
AcsI RAATTY 3 cut(s) 578, 1367, 2394
AcuI CTGAAG 3 cut(s) 864, 1658, 2187
AcyI GRCGYC 2 cut(s) 316, 2196
AdeI CACNNNGTG 2 cut(s) 1163, 1713
AfaI GTAC 9 cut(s) 381, 444, 516, 991, 1167, 1185, 1298, 1754, 1796
AfiI CCNNNNNNNGG 5 cut(s) 34, 35, 416, 1662, 2409
AflII CTTAAG 2 cut(s) 452, 607
AgsI TTSAA 8 cut(s) 103, 1138, 1414, 1934, 2074, 2363, 2607, 2854
AhlI ACTAGT 2 cut(s) 1835, 2495
AjnI CCWGG 4 cut(s) 1240, 1448, 1627, 1709
AleI CACNNNNGTG 2 cut(s) 344, 1658
Alw21I GWGCWC 1 cut(s) 2111
Alw26I GTCTC 5 cut(s) 417, 1323, 1761, 2768, 2798
Alw44I GTGCAC 1 cut(s) 2107
AlwI GGATC 5 cut(s) 964, 973, 977, 1726, 2450
AlwNI CAGNNNCTG 2 cut(s) 842, 2801
Ama87I CYCGRG 2 cut(s) 630, 2780
Aor13HI TCCGGA 1 cut(s) 1361
AoxI GGCC 4 cut(s) 152, 925, 1194, 2142
ApaLI GTGCAC 1 cut(s) 2107
ApeKI GCWGC 6 cut(s) 839, 882, 1061, 1146, 2288, 2336
ApoI RAATTY 3 cut(s) 578, 1367, 2394
Asp700I GAANNNNTTC 3 cut(s) 11, 831, 2398
Asp718I GGTACC 1 cut(s) 379
AspLEI GCGC 3 cut(s) 351, 353, 1402
AspS9I GGNCC 3 cut(s) 257, 784, 2143
AsuC2I CCSGG 1 cut(s) 1128
AsuHPI GGTGA 4 cut(s) 1229, 1365, 1876, 2797
AsuNHI GCTAGC 3 cut(s) 391, 1288, 2303
AvaI CYCGRG 2 cut(s) 630, 2780
AvaII GGWCC 2 cut(s) 257, 784
BaeGI GKGCMC 2 cut(s) 725, 2111
BalI TGGCCA 1 cut(s) 1196
BamHI GGATCC 1 cut(s) 969
BanI GGYRCC 3 cut(s) 379, 720, 1304
BanII GRGCYC 1 cut(s) 41
BauI CACGAG 1 cut(s) 1923
BbsI GAAGAC 3 cut(s) 90, 450, 2765
Bbv12I GWGCWC 1 cut(s) 2111
BbvI GCAGC 6 cut(s) 826, 869, 1048, 1158, 2275, 2323
BccI CCATC 5 cut(s) 163, 773, 1429, 2093, 2162
BciT130I CCWGG 4 cut(s) 1242, 1450, 1629, 1711
BciVI GTATCC 1 cut(s) 951
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 1128
BcoDI GTCTC 5 cut(s) 417, 1323, 1761, 2768, 2798
BcuI ACTAGT 2 cut(s) 1835, 2495
BfmI CTRYAG 3 cut(s) 996, 2723, 2793
BfrI CTTAAG 2 cut(s) 452, 607
BfuI GTATCC 1 cut(s) 951
BglII AGATCT 2 cut(s) 44, 95
BisI GCNGC 7 cut(s) 840, 883, 886, 1062, 1147, 2289, 2337
BlpI GCTNAGC 2 cut(s) 1177, 2438
BlsI GCNGC 7 cut(s) 841, 884, 887, 1063, 1148, 2290, 2338
BmcAI AGTACT 1 cut(s) 1298
Bme1390I CCNGG 5 cut(s) 1128, 1242, 1450, 1629, 1711
Bme18I GGWCC 2 cut(s) 257, 784
BmeT110I CYCGRG 2 cut(s) 630, 2780
BmgT120I GGNCC 3 cut(s) 257, 784, 2143
BmiI GGNNCC 5 cut(s) 258, 381, 722, 971, 1306
BmrFI CCNGG 5 cut(s) 1128, 1242, 1450, 1629, 1711
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 5 cut(s) 472, 1429, 2242, 2282, 2290
BmtI GCTAGC 3 cut(s) 395, 1292, 2307
BmuI ACTGGG 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 2135
BpiI GAAGAC 3 cut(s) 90, 450, 2765
BplI GAGNNNNNCTC 2 cut(s) 1478, 1510
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 2241
Bpu1102I GCTNAGC 2 cut(s) 1177, 2438
BpuEI CTTGAG 2 cut(s) 468, 2630
BpuMI CCSGG 1 cut(s) 1128
BsaHI GRCGYC 2 cut(s) 316, 2196
BsaI GGTCTC 2 cut(s) 417, 2768
BsaJI CCNNGG 4 cut(s) 928, 1449, 2226, 2781
BsaWI WCCGGW 1 cut(s) 1361
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 35, 416, 1662, 2409
Bse1I ACTGG 7 cut(s) 16, 364, 590, 1117, 1187, 1808, 2135
Bse3DI GCAATG 3 cut(s) 804, 2046, 2816
BseAI TCCGGA 1 cut(s) 1361
BseBI CCWGG 4 cut(s) 1242, 1450, 1629, 1711
BseDI CCNNGG 4 cut(s) 928, 1449, 2226, 2781
BseGI GGATG 7 cut(s) 357, 1440, 1444, 1947, 2059, 2233, 2462
BseLI CCNNNNNNNGG 5 cut(s) 34, 35, 416, 1662, 2409
BseMI GCAATG 3 cut(s) 804, 2046, 2816
BseMII CTCAG 4 cut(s) 517, 1561, 2259, 2793
BseNI ACTGG 7 cut(s) 16, 364, 590, 1117, 1187, 1808, 2135
BsePI GCGCGC 1 cut(s) 349
BseRI GAGGAG 4 cut(s) 175, 1311, 2374, 2684
BseSI GKGCMC 2 cut(s) 725, 2111
BseXI GCAGC 6 cut(s) 826, 869, 1048, 1158, 2275, 2323
BsgI GTGCAG 4 cut(s) 1832, 1938, 2178, 2625
Bsh1236I CGCG 3 cut(s) 282, 312, 351
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 4 cut(s) 154, 927, 1196, 2144
BshNI GGYRCC 3 cut(s) 379, 720, 1304
BsiEI CGRYCG 1 cut(s) 511
BsiHKAI GWGCWC 1 cut(s) 2111
BsiHKCI CYCGRG 2 cut(s) 630, 2780
BsiSI CCGG 2 cut(s) 1127, 1362
BslFI GGGAC 2 cut(s) 1403, 2486
BslI CCNNNNNNNGG 5 cut(s) 34, 35, 416, 1662, 2409
BsmAI GTCTC 5 cut(s) 417, 1323, 1761, 2768, 2798
BsmBI CGTCTC 1 cut(s) 2798
BsmFI GGGAC 2 cut(s) 1403, 2486
BsnI GGCC 4 cut(s) 154, 927, 1196, 2144
Bso31I GGTCTC 2 cut(s) 417, 2768
BsoBI CYCGRG 2 cut(s) 630, 2780
Bsp1286I GDGCHC 3 cut(s) 41, 725, 2111
Bsp13I TCCGGA 1 cut(s) 1361
Bsp1407I TGTACA 1 cut(s) 1165
Bsp1720I GCTNAGC 2 cut(s) 1177, 2438
BspACI CCGC 7 cut(s) 312, 753, 886, 1898, 2343, 2432, 2842
BspANI GGCC 4 cut(s) 154, 927, 1196, 2144
BspCNI CTCAG 4 cut(s) 516, 1560, 2260, 2794
BspEI TCCGGA 1 cut(s) 1361
BspFNI CGCG 3 cut(s) 282, 312, 351
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 258, 381, 722, 971, 1306
BspMAI CTGCAG 2 cut(s) 1000, 2797
BspOI GCTAGC 3 cut(s) 395, 1292, 2307
BspPI GGATC 5 cut(s) 964, 973, 977, 1726, 2450
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 3 cut(s) 379, 720, 1304
BspTI CTTAAG 2 cut(s) 452, 607
BspTNI GGTCTC 2 cut(s) 417, 2768
BsrDI GCAATG 3 cut(s) 804, 2046, 2816
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 7 cut(s) 16, 364, 590, 1117, 1187, 1808, 2135
BssECI CCNNGG 4 cut(s) 928, 1449, 2226, 2781
BssHII GCGCGC 1 cut(s) 349
BssNI GRCGYC 2 cut(s) 316, 2196
BssSI CACGAG 1 cut(s) 1923
BssT1I CCWWGG 2 cut(s) 928, 2226
Bst2BI CACGAG 1 cut(s) 1923
Bst2UI CCWGG 4 cut(s) 1242, 1450, 1629, 1711
Bst4CI ACNGT 7 cut(s) 447, 524, 683, 1170, 1484, 1605, 2695
Bst6I CTCTTC 5 cut(s) 57, 504, 840, 1329, 2206
BstACI GRCGYC 2 cut(s) 316, 2196
BstAFI CTTAAG 2 cut(s) 452, 607
BstAPI GCANNNNNTGC 1 cut(s) 551
BstAUI TGTACA 1 cut(s) 1165
BstC8I GCNNGC 6 cut(s) 351, 389, 393, 623, 1290, 2305
BstEII GGTNACC 1 cut(s) 2785
BstF5I GGATG 7 cut(s) 357, 1440, 1444, 1947, 2059, 2233, 2462
BstFNI CGCG 3 cut(s) 282, 312, 351
BstHHI GCGC 3 cut(s) 351, 353, 1402
BstMAI GTCTC 5 cut(s) 417, 1323, 1761, 2768, 2798
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 8 cut(s) 551, 618, 659, 924, 1004, 1289, 2115, 2342
BstNI CCWGG 4 cut(s) 1242, 1450, 1629, 1711
BstNSI RCATGY 3 cut(s) 443, 1400, 1422
BstPAI GACNNNNGTC 1 cut(s) 2135
BstPI GGTNACC 1 cut(s) 2785
BstSCI CCNGG 5 cut(s) 1126, 1240, 1448, 1627, 1709
BstSFI CTRYAG 3 cut(s) 996, 2723, 2793
BstSLI GKGCMC 2 cut(s) 725, 2111
BstUI CGCG 3 cut(s) 282, 312, 351
BstV1I GCAGC 6 cut(s) 826, 869, 1048, 1158, 2275, 2323
BstV2I GAAGAC 3 cut(s) 90, 450, 2765
BstX2I RGATCY 4 cut(s) 44, 95, 969, 978
BstXI CCANNNNNNTGG 2 cut(s) 1057, 1717
BstYI RGATCY 4 cut(s) 44, 95, 969, 978
BsuI GTATCC 1 cut(s) 951
BsuRI GGCC 4 cut(s) 154, 927, 1196, 2144
BtgZI GCGATG 2 cut(s) 90, 2615
BtsCI GGATG 7 cut(s) 357, 1440, 1444, 1947, 2059, 2233, 2462
BtsI GCAGTG 3 cut(s) 87, 1844, 2790
Cac8I GCNNGC 6 cut(s) 351, 389, 393, 623, 1290, 2305
CaiI CAGNNNCTG 2 cut(s) 842, 2801
CciI TCATGA 1 cut(s) 466
CfoI GCGC 3 cut(s) 351, 353, 1402
Cfr13I GGNCC 3 cut(s) 257, 784, 2143
CseI GACGC 3 cut(s) 46, 2107, 2204
CsiI ACCWGGT 1 cut(s) 1709
Csp6I GTAC 9 cut(s) 380, 443, 515, 990, 1166, 1184, 1297, 1753, 1795
CspCI CAANNNNNGTGG 2 cut(s) 2052, 2087
CviQI GTAC 9 cut(s) 380, 443, 515, 990, 1166, 1184, 1297, 1753, 1795
DraIII CACNNNGTG 2 cut(s) 1163, 1713
EaeI YGGCCR 1 cut(s) 1194
Eam1104I CTCTTC 5 cut(s) 57, 504, 840, 1329, 2206
EarI CTCTTC 5 cut(s) 57, 504, 840, 1329, 2206
Eco130I CCWWGG 2 cut(s) 928, 2226
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 2 cut(s) 417, 2768
Eco32I GATATC 2 cut(s) 604, 2323
Eco47I GGWCC 2 cut(s) 257, 784
Eco57I CTGAAG 3 cut(s) 864, 1658, 2187
Eco88I CYCGRG 2 cut(s) 630, 2780
Eco91I GGTNACC 1 cut(s) 2785
EcoO65I GGTNACC 1 cut(s) 2785
EcoRI GAATTC 2 cut(s) 578, 2394
EcoRII CCWGG 4 cut(s) 1240, 1448, 1627, 1709
EcoRV GATATC 2 cut(s) 604, 2323
EcoT14I CCWWGG 2 cut(s) 928, 2226
EcoT22I ATGCAT 3 cut(s) 1285, 1420, 1444
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 928, 2226
Esp3I CGTCTC 1 cut(s) 2798
FalI AAGNNNNNCTT 2 cut(s) 1815, 1847
FaqI GGGAC 2 cut(s) 1403, 2486
FauI CCCGC 1 cut(s) 746
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 3 cut(s) 1600, 1840, 2742
Fnu4HI GCNGC 7 cut(s) 840, 883, 886, 1062, 1147, 2289, 2337
FokI GGATG 7 cut(s) 344, 1447, 1451, 1934, 2046, 2220, 2449
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 7 cut(s) 840, 883, 886, 1062, 1147, 2289, 2337
GlaI GCGC 3 cut(s) 350, 352, 1401
GluI GCNGC 7 cut(s) 840, 883, 886, 1062, 1147, 2289, 2337
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 4 cut(s) 154, 927, 1196, 2144
HapII CCGG 2 cut(s) 1127, 1362
HgaI GACGC 3 cut(s) 46, 2107, 2204
HhaI GCGC 3 cut(s) 351, 353, 1402
Hin1I GRCGYC 2 cut(s) 316, 2196
Hin6I GCGC 3 cut(s) 349, 351, 1400
HinP1I GCGC 3 cut(s) 349, 351, 1400
HincII GTYRAC 6 cut(s) 196, 875, 1601, 2330, 2493, 2743
HindII GTYRAC 6 cut(s) 196, 875, 1601, 2330, 2493, 2743
HindIII AAGCTT 2 cut(s) 623, 2735
HpaII CCGG 2 cut(s) 1127, 1362
HphI GGTGA 4 cut(s) 1229, 1365, 1876, 2797
Hpy188III TCNNGA 8 cut(s) 42, 467, 632, 1362, 1735, 1925, 2015, 2318
Hpy99I CGWCG 3 cut(s) 62, 1566, 2123
HpyAV CCTTC 5 cut(s) 65, 917, 1271, 1807, 2469
HpyCH4III ACNGT 7 cut(s) 447, 524, 683, 1170, 1484, 1605, 2695
HpyCH4IV ACGT 8 cut(s) 174, 219, 316, 988, 1724, 1881, 2215, 2566
HpyF10VI GCNNNNNNNGC 8 cut(s) 551, 618, 659, 924, 1004, 1289, 2115, 2342
HpySE526I ACGT 8 cut(s) 174, 219, 316, 988, 1724, 1881, 2215, 2566
Hsp92I GRCGYC 2 cut(s) 316, 2196
HspAI GCGC 3 cut(s) 349, 351, 1400
Kpn2I TCCGGA 1 cut(s) 1361
KpnI GGTACC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 469
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 4 cut(s) 2285, 2434, 2671, 2686
Lsp1109I GCAGC 6 cut(s) 826, 869, 1048, 1158, 2275, 2323
LweI GCATC 5 cut(s) 472, 1429, 2242, 2282, 2290
MabI ACCWGGT 1 cut(s) 1709
MaeII ACGT 8 cut(s) 174, 219, 316, 988, 1724, 1881, 2215, 2566
MaeIII GTNAC 7 cut(s) 1155, 1244, 1720, 1759, 1882, 2695, 2785
MflI RGATCY 4 cut(s) 44, 95, 969, 978
MhlI GDGCHC 3 cut(s) 41, 725, 2111
MlsI TGGCCA 1 cut(s) 1196
MluCI AATT 8 cut(s) 578, 1367, 2358, 2394, 2589, 2607, 2660, 2681
MluNI TGGCCA 1 cut(s) 1196
MlyI GAGTC 9 cut(s) 364, 880, 1385, 1575, 1747, 1849, 1990, 2024, 2615
MmeI TCCRAC 3 cut(s) 1006, 2101, 2427
Mox20I TGGCCA 1 cut(s) 1196
Mph1103I ATGCAT 3 cut(s) 1285, 1420, 1444
MroI TCCGGA 1 cut(s) 1361
MroXI GAANNNNTTC 3 cut(s) 11, 831, 2398
MscI TGGCCA 1 cut(s) 1196
MseI TTAA 4 cut(s) 453, 608, 2114, 2663
MslI CAYNNNNRTG 4 cut(s) 344, 1658, 1700, 1911
Msp20I TGGCCA 1 cut(s) 1196
MspA1I CMGCKG 1 cut(s) 839
MspCI CTTAAG 2 cut(s) 452, 607
MspI CCGG 2 cut(s) 1127, 1362
MspR9I CCNGG 5 cut(s) 1128, 1242, 1450, 1629, 1711
MvaI CCWGG 4 cut(s) 1242, 1450, 1629, 1711
MvnI CGCG 3 cut(s) 282, 312, 351
MwoI GCNNNNNNNGC 8 cut(s) 551, 618, 659, 924, 1004, 1289, 2115, 2342
NciI CCSGG 1 cut(s) 1128
NheI GCTAGC 3 cut(s) 391, 1288, 2303
NlaIV GGNNCC 5 cut(s) 258, 381, 722, 971, 1306
NmeAIII GCCGAG 1 cut(s) 1232
NmuCI GTSAC 4 cut(s) 1155, 1882, 2695, 2785
NsiI ATGCAT 3 cut(s) 1285, 1420, 1444
NspI RCATGY 3 cut(s) 443, 1400, 1422
OliI CACNNNNGTG 2 cut(s) 344, 1658
PagI TCATGA 1 cut(s) 466
PauI GCGCGC 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 4 cut(s) 66, 1597, 2323, 2563
PdmI GAANNNNTTC 3 cut(s) 11, 831, 2398
PfeI GAWTC 7 cut(s) 235, 332, 1120, 1688, 1918, 2039, 2582
PflFI GACNNNGTC 2 cut(s) 1772, 2477
PflMI CCANNNNNTGG 1 cut(s) 1662
PfoI TCCNGGA 1 cut(s) 1126
PkrI GCNGC 7 cut(s) 841, 884, 887, 1063, 1148, 2290, 2338
Ple19I CGATCG 1 cut(s) 511
PleI GAGTC 9 cut(s) 364, 879, 1385, 1574, 1746, 1849, 1990, 2024, 2615
PpsI GAGTC 9 cut(s) 364, 879, 1385, 1574, 1746, 1849, 1990, 2024, 2615
PshAI GACNNNNGTC 1 cut(s) 2135
Psp1406I AACGTT 2 cut(s) 174, 1724
Psp6I CCWGG 4 cut(s) 1240, 1448, 1627, 1709
PspEI GGTNACC 1 cut(s) 2785
PspGI CCWGG 4 cut(s) 1240, 1448, 1627, 1709
PspN4I GGNNCC 5 cut(s) 258, 381, 722, 971, 1306
PspPI GGNCC 3 cut(s) 257, 784, 2143
PstI CTGCAG 2 cut(s) 1000, 2797
PstNI CAGNNNCTG 2 cut(s) 842, 2801
PsuI RGATCY 4 cut(s) 44, 95, 969, 978
PsyI GACNNNGTC 2 cut(s) 1772, 2477
PteI GCGCGC 1 cut(s) 349
PvuI CGATCG 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 9 cut(s) 381, 444, 516, 991, 1167, 1185, 1298, 1754, 1796
RsaNI GTAC 9 cut(s) 380, 443, 515, 990, 1166, 1184, 1297, 1753, 1795
RseI CAYNNNNRTG 4 cut(s) 344, 1658, 1700, 1911
SalI GTCGAC 2 cut(s) 1599, 2741
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 4 cut(s) 453, 608, 2114, 2663
SatI GCNGC 7 cut(s) 840, 883, 886, 1062, 1147, 2289, 2337
Sau96I GGNCC 3 cut(s) 257, 784, 2143
ScaI AGTACT 1 cut(s) 1298
SchI GAGTC 9 cut(s) 364, 880, 1385, 1575, 1747, 1849, 1990, 2024, 2615
ScrFI CCNGG 5 cut(s) 1128, 1242, 1450, 1629, 1711
SduI GDGCHC 3 cut(s) 41, 725, 2111
SexAI ACCWGGT 1 cut(s) 1709
SfaNI GCATC 5 cut(s) 472, 1429, 2242, 2282, 2290
SfcI CTRYAG 3 cut(s) 996, 2723, 2793
SinI GGWCC 2 cut(s) 257, 784
SmiMI CAYNNNNRTG 4 cut(s) 344, 1658, 1700, 1911
SmlI CTYRAG 4 cut(s) 452, 483, 607, 2645
SmoI CTYRAG 4 cut(s) 452, 483, 607, 2645
SpeI ACTAGT 2 cut(s) 1835, 2495
Sse9I AATT 8 cut(s) 578, 1367, 2358, 2394, 2589, 2607, 2660, 2681
SsiI CCGC 7 cut(s) 312, 753, 886, 1898, 2343, 2432, 2842
StyD4I CCNGG 5 cut(s) 1126, 1240, 1448, 1627, 1709
StyI CCWWGG 2 cut(s) 928, 2226
TaaI ACNGT 7 cut(s) 447, 524, 683, 1170, 1484, 1605, 2695
TaiI ACGT 8 cut(s) 177, 222, 319, 991, 1727, 1884, 2218, 2569
TaqI TCGA 9 cut(s) 60, 158, 403, 649, 1528, 1600, 1776, 2481, 2742
TasI AATT 8 cut(s) 578, 1367, 2358, 2394, 2589, 2607, 2660, 2681
TatI WGTACW 4 cut(s) 442, 1165, 1296, 1752
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 7 cut(s) 235, 332, 1120, 1688, 1918, 2039, 2582
Tru1I TTAA 4 cut(s) 453, 608, 2114, 2663
Tru9I TTAA 4 cut(s) 453, 608, 2114, 2663
TseFI GTSAC 4 cut(s) 1155, 1882, 2695, 2785
TseI GCWGC 6 cut(s) 839, 882, 1061, 1146, 2288, 2336
Tsp45I GTSAC 4 cut(s) 1155, 1882, 2695, 2785
TspGWI ACGGA 3 cut(s) 1763, 2315, 2455
Tth111I GACNNNGTC 2 cut(s) 1772, 2477
Van91I CCANNNNNTGG 1 cut(s) 1662
Vha464I CTTAAG 2 cut(s) 452, 607
VneI GTGCAC 1 cut(s) 2107
VpaK11BI GGWCC 2 cut(s) 257, 784
XapI RAATTY 3 cut(s) 578, 1367, 2394
XbaI TCTAGA 2 cut(s) 41, 2014
XceI RCATGY 3 cut(s) 443, 1400, 1422
XcmI CCANNNNNNNNNTGG 1 cut(s) 1625
XmiI GTMKAC 3 cut(s) 1600, 1840, 2742
XmnI GAANNNNTTC 3 cut(s) 11, 831, 2398
ZraI GACGTC 1 cut(s) 317
ZrmI AGTACT 1 cut(s) 1298
Zsp2I ATGCAT 3 cut(s) 1285, 1420, 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.