Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Reverse (-)

35917849 .. 35919126

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1306100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTGGCTCAATGTCAAATGAACCTATTTGATTTGACTCGGGATGTTATTCATCCATCAGAGCCTGAGAATACCCGGGAAGCAGCAGAAAGAACTAATTTGTTAAATAGGATTCTGACATCTCGAGGACTGCGCAGAGAGCAAAATCCAGTGGTACTTGCAGATGATGTTGTGGATTTAACGCAAAGCAACGTGACCGCTGTTGAAACAAGGGAAAACCGCCAACTTCAGTCCTTACTACTTAGAAGGACACAATCGCACAGAGCAACACTATCTTCTCTCTCGTCTGCATTGAGTTCTGCTGAAAGGTTAGTTGAGGCATATTATCGTAACCGTAATAGAAATCAAGAACAACAGCAGCCTGCACCAGTTGATGATAGAGATTCTTTCTCAAGTATTGCAGCTGTTATAAATTCAGAGAGCCAACTGGACACAGCTGTGGAAATTGATTCCATGGTTTCCCTTTCAACTTCATCTTCCAGAAGAAGAAATGATTCGTCAAGAGTTTCGGACATGGACAGTGGAGATTCTCGTGCCCACAGAAGAAGAAGACTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

187

Amino Acids

21.1

Weight (kDa)

6.85

Isoelectric Point (pI)

75.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
Acc16I	TGCGCA	1 cut(s)	134
AciI	CCGC	2 cut(s)	198, 220
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	206, 468
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	404, 437
AluI	AGCT	2 cut(s)	404, 437
AlwNI	CAGNNNCTG	1 cut(s)	65
Ama87I	CYCGRG	3 cut(s)	39, 75, 123
ApeKI	GCWGC	3 cut(s)	83, 358, 401
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	76, 77
AvaI	CYCGRG	3 cut(s)	39, 75, 123
BaeGI	GKGCMC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	95, 370, 413
BccI	CCATC	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	76, 77
BisI	GCNGC	3 cut(s)	84, 359, 402
BlsI	GCNGC	3 cut(s)	85, 360, 403
Bme1390I	CCNGG	2 cut(s)	76, 77
BmeT110I	CYCGRG	3 cut(s)	39, 75, 123
BmrFI	CCNGG	2 cut(s)	76, 77
BpiI	GAAGAC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	2 cut(s)	76, 77
BsaJI	CCNNGG	2 cut(s)	75, 453
Bse1I	ACTGG	3 cut(s)	149, 368, 432
BseDI	CCNNGG	2 cut(s)	75, 453
BseGI	GGATG	2 cut(s)	49, 52
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	149, 368, 432
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	3 cut(s)	95, 370, 413
BsgI	GTGCAG	1 cut(s)	348
BsiHKCI	CYCGRG	3 cut(s)	39, 75, 123
BsiSI	CCGG	1 cut(s)	76
BsoBI	CYCGRG	3 cut(s)	39, 75, 123
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	198, 220
BspCNI	CTCAG	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	149, 368, 432
BssECI	CCNNGG	2 cut(s)	75, 453
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	335, 521
BstC8I	GCNNGC	2 cut(s)	6, 363
BstDEI	CTNAG	2 cut(s)	66, 242
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	49, 52
BstHHI	GCGC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	74, 75
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	3 cut(s)	95, 370, 413
BstV2I	GAAGAC	1 cut(s)	556
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	49, 52
BtsIMutI	CAGTG	2 cut(s)	156, 526
Cac8I	GCNNGC	2 cut(s)	6, 363
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	135
Cfr9I	CCCGGG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	454, 514
CviJI	RGCY	6 cut(s)	8, 64, 361, 404, 423, 437
CviKI_1	RGCY	6 cut(s)	8, 64, 361, 404, 423, 437
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	2 cut(s)	66, 242
Eco130I	CCWWGG	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	3 cut(s)	39, 75, 123
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	457, 517
FaiI	YATR	4 cut(s)	322, 410, 455, 515
FatI	CATG	2 cut(s)	453, 513
Fnu4HI	GCNGC	3 cut(s)	84, 359, 402
FokI	GGATG	2 cut(s)	39, 56
Fsp4HI	GCNGC	3 cut(s)	84, 359, 402
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	3 cut(s)	84, 359, 402
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	457, 517
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	37, 112, 383, 449, 494, 527
HpaII	CCGG	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	61, 117, 418, 511
Hpy188III	TCNNGA	5 cut(s)	41, 123, 347, 480, 501
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	335, 521
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	161, 290, 365, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	66, 242
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	457, 517
HspAI	GCGC	1 cut(s)	133
LpnPI	CCDG	7 cut(s)	78, 89, 162, 375, 381, 413, 493
Lsp1109I	GCAGC	3 cut(s)	95, 370, 413
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	193, 329
MboII	GAAGA	7 cut(s)	267, 468, 495, 498, 555, 558, 561
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	3 cut(s)	97, 412, 444
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	119, 310
MroXI	GAANNNNTTC	1 cut(s)	493
MseI	TTAA	3 cut(s)	104, 179, 555
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	3 cut(s)	200, 404, 437
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	76, 77
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	76, 77
NcoI	CCATGG	1 cut(s)	453
NlaIII	CATG	2 cut(s)	457, 517
NmuCI	GTSAC	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	5 cut(s)	112, 383, 449, 494, 527
PkrI	GCNGC	3 cut(s)	85, 360, 403
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PsiI	TTATAA	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	65
PvuII	CAGCTG	2 cut(s)	404, 437
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	104, 179, 555
SatI	GCNGC	3 cut(s)	84, 359, 402
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	76, 77
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	5 cut(s)	27, 195, 311, 406, 439
Sfr274I	CTCGAG	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	123
SmaI	CCCGGG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	123, 391
SmoI	CTYRAG	2 cut(s)	123, 391
Sse9I	AATT	3 cut(s)	97, 412, 444
SsiI	CCGC	2 cut(s)	198, 220
StyD4I	CCNGG	2 cut(s)	74, 75
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	335, 521
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	124
TasI	AATT	3 cut(s)	97, 412, 444
TfiI	GAWTC	5 cut(s)	112, 383, 449, 494, 527
Tru1I	TTAA	3 cut(s)	104, 179, 555
Tru9I	TTAA	3 cut(s)	104, 179, 555
TscAI	CASTG	2 cut(s)	156, 526
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	83, 358, 401
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	35, 41, 462
TspMI	CCCGGG	1 cut(s)	75
TspRI	CASTG	2 cut(s)	156, 526
XapI	RAATTY	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	123
XmaI	CCCGGG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.