Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8192992.1

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 701

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8192992.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

cagaggagaaggatgatgttgaaaagagcagtggcaatgatggtagcttttttgattgtaatatttgtctggacttggctagggatcctgtattgacttgttgtggtcatttgttttgttggccatgcctgtaccgatggttacatgtgcattccgatgcaaaggaatgcccagtttgtaagggagaggtaactctcaagaatgtgactccaatttatggccgtgggaacaatgctcgtgagccagatgatgactcaaatcttaagatccctcttaggcctcatgcacggcgggttgaaagcttgaggcaaactattcagaggaatgcatttacttttccagtggaggagatgattcgacgccttggaagcagatttgatttgtctcgggatttggttcagccaacagaagatactccccgggaaactgcagctgaaagaacaaatggcttgttaaataggattctaacatctcgagcattgcgcagagagcaaattcagttggcacaaactgaaattgtagatttaacgcaagacaacattactagccttgatacaggagataaccgccggcttcagtccatgctacttcgaagaacacaatcacatagagcaacactgtcttctctgtcatctgcattgagttctgctgaaaggttggtggaggcatatttccataaccatcctattacacctgcagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

233

Amino Acids

26.51

Weight (kDa)

6.43

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	2 cut(s)	291, 567
AclWI	GGATC	3 cut(s)	79, 92, 261
AcoI	YGGCCR	2 cut(s)	121, 219
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	559
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	22, 298
AluBI	AGCT	3 cut(s)	47, 302, 433
AluI	AGCT	3 cut(s)	47, 302, 433
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	79, 92, 261
Ama87I	CYCGRG	3 cut(s)	386, 419, 473
AoxI	GGCC	3 cut(s)	121, 219, 277
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	485
AsuC2I	CCSGG	2 cut(s)	420, 421
AsuII	TTCGAA	1 cut(s)	591
AvaI	CYCGRG	3 cut(s)	386, 419, 473
BalI	TGGCCA	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	3 cut(s)	34, 131, 689
BceAI	ACGGC	2 cut(s)	206, 304
BcnI	CCSGG	2 cut(s)	420, 421
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	80, 545
BfmI	CTRYAG	2 cut(s)	428, 695
BfrI	CTTAAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	420, 421
BmeT110I	CYCGRG	3 cut(s)	386, 419, 473
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	420, 421
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	181, 324
BpuMI	CCSGG	2 cut(s)	420, 421
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	4 cut(s)	222, 363, 418, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	172, 340
Bse3DI	GCAATG	2 cut(s)	42, 478
BseDI	CCNNGG	4 cut(s)	222, 363, 418, 419
BseGI	GGATG	2 cut(s)	18, 681
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	2 cut(s)	42, 478
BseNI	ACTGG	2 cut(s)	172, 340
BseRI	GAGGAG	2 cut(s)	19, 361
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	3 cut(s)	123, 221, 279
BsiHKCI	CYCGRG	3 cut(s)	386, 419, 473
BsiSI	CCGG	2 cut(s)	420, 570
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	3 cut(s)	150, 172, 330
BsnI	GGCC	3 cut(s)	123, 221, 279
BsoBI	CYCGRG	3 cut(s)	386, 419, 473
Bsp119I	TTCGAA	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	84, 266
BspACI	CCGC	2 cut(s)	291, 567
BspANI	GGCC	3 cut(s)	123, 221, 279
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	2 cut(s)	432, 699
BspPI	GGATC	3 cut(s)	79, 92, 261
BspT104I	TTCGAA	1 cut(s)	591
BspTI	CTTAAG	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	42, 478
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	172, 340
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	4 cut(s)	222, 363, 418, 419
BssMI	GATC	2 cut(s)	84, 266
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	274
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	18, 681
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	87, 269
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	84, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 489
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	418, 419
BstSFI	CTRYAG	2 cut(s)	428, 695
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	614
BstX2I	RGATCY	2 cut(s)	84, 266
BstYI	RGATCY	2 cut(s)	84, 266
BsuRI	GGCC	3 cut(s)	123, 221, 279
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	18, 681
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 347, 616
Cac8I	GCNNGC	1 cut(s)	571
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	569
Cfr9I	CCCGGG	1 cut(s)	419
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	4 cut(s)	125, 145, 283, 582
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	2 cut(s)	86, 268
DpnII	GATC	2 cut(s)	84, 266
EaeI	YGGCCR	2 cut(s)	121, 219
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	559
Eco88I	CYCGRG	3 cut(s)	386, 419, 473
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	128, 148, 286, 585
FaiI	YATR	8 cut(s)	126, 146, 218, 284, 583, 608, 669, 677
FatI	CATG	4 cut(s)	124, 144, 282, 581
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	2 cut(s)	25, 668
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	2 cut(s)	80, 545
FspI	TGCGCA	1 cut(s)	484
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	123, 221, 279
HapII	CCGG	2 cut(s)	420, 570
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	128, 148, 286, 585
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	4 cut(s)	207, 253, 354, 462
HpaII	CCGG	2 cut(s)	420, 570
Hpy188I	TCNGA	2 cut(s)	156, 320
Hpy188III	TCNNGA	5 cut(s)	70, 198, 238, 388, 473
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	3
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4V	TGCA	7 cut(s)	150, 160, 286, 328, 430, 637, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 489
HpyF3I	CTNAG	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	128, 148, 286, 585
HspAI	GCGC	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Kzo9I	GATC	2 cut(s)	84, 266
LpnPI	CCDG	9 cut(s)	55, 101, 142, 185, 257, 353, 433, 542, 583
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	80, 545
MaeIII	GTNAC	3 cut(s)	140, 189, 204
MalI	GATC	2 cut(s)	86, 268
MboI	GATC	2 cut(s)	84, 266
MboII	GAAGA	3 cut(s)	421, 605, 614
MflI	RGATCY	2 cut(s)	84, 266
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	3 cut(s)	212, 494, 515
MluNI	TGGCCA	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	201, 247
MnlI	CCTC	7 cut(s)	180, 281, 290, 299, 314, 339, 657
Mox20I	TGGCCA	1 cut(s)	123
Mph1103I	ATGCAT	1 cut(s)	330
MroNI	GCCGGC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	3 cut(s)	263, 454, 526
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	433
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	2 cut(s)	420, 570
MspR9I	CCNGG	2 cut(s)	420, 421
Mva1269I	GAATGC	3 cut(s)	150, 172, 330
MwoI	GCNNNNNNNGC	2 cut(s)	368, 489
NaeI	GCCGGC	1 cut(s)	571
NciI	CCSGG	2 cut(s)	420, 421
NdeII	GATC	2 cut(s)	84, 266
NgoMIV	GCCGGC	1 cut(s)	569
NlaIII	CATG	4 cut(s)	128, 148, 286, 585
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	204
NsbI	TGCGCA	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	591
PaeR7I	CTCGAG	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	279
PciI	ACATGT	1 cut(s)	144
PctI	GAATGC	3 cut(s)	150, 172, 330
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	354, 462
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	2 cut(s)	201, 247
PpsI	GAGTC	2 cut(s)	201, 247
PscI	ACATGT	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	2 cut(s)	432, 699
PsuI	RGATCY	2 cut(s)	84, 266
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	263, 454, 526
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	84, 266
SchI	GAGTC	2 cut(s)	201, 247
ScrFI	CCNGG	2 cut(s)	420, 421
SetI	ASST	6 cut(s)	49, 191, 304, 435, 658, 696
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	2 cut(s)	428, 695
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	473
SmaI	CCCGGG	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	4 cut(s)	196, 262, 303, 473
SmoI	CTYRAG	4 cut(s)	196, 262, 303, 473
Sse9I	AATT	3 cut(s)	212, 494, 515
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	2 cut(s)	291, 567
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	80, 545
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	418, 419
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	620
TaqI	TCGA	3 cut(s)	357, 474, 591
TasI	AATT	3 cut(s)	212, 494, 515
TfiI	GAWTC	2 cut(s)	354, 462
Tru1I	TTAA	3 cut(s)	263, 454, 526
Tru9I	TTAA	3 cut(s)	263, 454, 526
TscAI	CASTG	3 cut(s)	36, 347, 623
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	204
TspMI	CCCGGG	1 cut(s)	419
TspRI	CASTG	3 cut(s)	36, 347, 623
Van91I	CCANNNNNTGG	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	473
XmaI	CCCGGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	80, 545
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.