Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Reverse (-)

23296241 .. 23298552

Gene Structure 2312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGTGAGGAGACATCTGATGCAATGAACCTTGACCTGAATCTGGGTCCTGGTCCCGAGCCGGCTTCTGCCACCATGTCGATTGAGCCTGTGAATTTGGAGAATTGGATTGACCAGCAGCCTATTCACCAAATTGCGGAAGCTTATGGGATTAATCCATTTCGACGGAGATGGCCACAACCTGAGGCGCATAATGTTTCGTCAGAGTTGAGTCAATTGATGGTCGATTCTGGTACTTCGAGTATACTACAAGCGGGGGAGGGTAGTGTTGCTGCAGAGGAGAGAAGCAACGATGTGCCTAAAAAGTGTGAAAATATCAATGGGATTTTAGAAAATGAGACTTCAGAGGAGAAGGATGATGTTGAAAAGAGCAGTGGCAATGATGGTAGCTTTTTTGATTGTAATATTTGTCTGGACTTGGCTAGGGATCCTGTATTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTGTACCGATGGTTACATGTGCATTCCGATGCAAAGGAATGCCCAGTTTGTAAGGGAGAGGTAACTCTCAAGAATGTGACTCCAATTTATGGCCGTGGGAACAATGCTCGTGAGCCAGATGATGACTCAAATCTTAAGATCCCTCTTAGGCCTCACGCACGGCGGGTTGAAAGCTTGAGGCAAACTATTCAGAGGAATGCATTTACTTTTCCGGTGGAGGAGATGATTCGACGCCTTGGAAGCAGATTTGATTTGTCTCGGGATTTGGTTCAGCCAACAGAAGATACTCCCCGGGAAACTGCAGCTGAAAGAACAAATGGCTTGTTAAATAGGATCCTAACATCTCGAGCACTGCGCAGAGAGCAAATTCAGTTGGCACAAACTGAAATTGTAGATTTAACGCAAGACAACATTACTAGCCTTGATACAGGAGATAACCGCCGGCTTCAGTCCATGCTACTTCGAAGAACACAATCACATAGAGCAACACTTTCTTCTCTGTCATCTGCATTGAGTTCTGCTGAAAGGTTGGTGGAGGCATATTTCCATAACCATCCTATTACACCTGCAGTTAGAAATCAAGAGCCGCCTCCACCAGTTGATGACAGAGACTCTTTCTCGAGTATTCAAGCTGTTATAAATTCAGAGAGTCAAATGGACACAGCTGTGGAAATCGATTCAATGGTTTCCCTTTCAACTTCATCTTCCAGAAGAAGAAATGAAGCTTCAAGGGTTTCAGACATGGACAGTGGAGACTCCCGTGCCCCAAGAAGGAGAAGACTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

419

Amino Acids

46.93

Weight (kDa)

5.13

Isoelectric Point (pI)

71.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	133 - 175	2.4e-07	Ring finger domain
zf-RING_5	PF14634	133 - 175	5e-07	zinc-RING finger domain
zf-C3HC4	PF00097	134 - 174	4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	134 - 172	6.4e-08	RING-type zinc-finger
zf-C3HC4_2	PF13923	134 - 174	2.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_3	PF13920	134 - 179	9.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1109
AarI	CACCTGC	1 cut(s)	1045
Acc16I	TGCGCA	1 cut(s)	827
Acc36I	ACCTGC	1 cut(s)	1045
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	5 cut(s)	137, 254, 634, 910, 1058
AclWI	GGATC	5 cut(s)	422, 435, 604, 799, 812
AcoI	YGGCCR	3 cut(s)	173, 464, 562
AcsI	RAATTY	3 cut(s)	94, 837, 1111
AcuI	CTGAAG	2 cut(s)	327, 902
AcyI	GRCGYC	1 cut(s)	703
AfaI	GTAC	2 cut(s)	235, 476
AfiI	CCNNNNNNNGG	4 cut(s)	43, 136, 560, 1242
AflII	CTTAAG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	6 cut(s)	365, 641, 1100, 1152, 1167, 1200
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	1136
AluBI	AGCT	7 cut(s)	143, 390, 645, 776, 1103, 1136, 1196
AluI	AGCT	7 cut(s)	143, 390, 645, 776, 1103, 1136, 1196
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	5 cut(s)	5, 332, 732, 1074, 1218
AlwI	GGATC	5 cut(s)	422, 435, 604, 799, 812
Ama87I	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
AoxI	GGCC	4 cut(s)	173, 464, 562, 620
ApeKI	GCWGC	3 cut(s)	118, 272, 773
ApoI	RAATTY	3 cut(s)	94, 837, 1111
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	190, 828
AspS9I	GGNCC	2 cut(s)	47, 53
AsuC2I	CCSGG	2 cut(s)	763, 764
AsuHPI	GGTGA	2 cut(s)	17, 119
AsuII	TTCGAA	1 cut(s)	934
AvaI	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
AvaII	GGWCC	2 cut(s)	47, 53
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	1237
BalI	TGGCCA	2 cut(s)	175, 466
BamHI	GGATCC	2 cut(s)	427, 804
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	1255
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	130, 259, 785
BccI	CCATC	5 cut(s)	165, 214, 377, 474, 1032
BceAI	ACGGC	2 cut(s)	549, 647
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	763, 764
BcoDI	GTCTC	5 cut(s)	5, 332, 732, 1074, 1218
BfaI	CTAG	2 cut(s)	423, 888
BfmI	CTRYAG	3 cut(s)	273, 771, 1038
BfrI	CTTAAG	1 cut(s)	605
BfuAI	ACCTGC	1 cut(s)	1045
BisI	GCNGC	4 cut(s)	119, 273, 774, 1058
BlsI	GCNGC	4 cut(s)	120, 274, 775, 1059
Bme1390I	CCNGG	3 cut(s)	51, 763, 764
Bme18I	GGWCC	2 cut(s)	47, 53
BmeT110I	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
BmgT120I	GGNCC	2 cut(s)	47, 53
BmiI	GGNNCC	4 cut(s)	48, 55, 429, 806
BmrFI	CCNGG	3 cut(s)	51, 763, 764
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	10, 490
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	1255
Bpu14I	TTCGAA	1 cut(s)	934
BpuEI	CTTGAG	2 cut(s)	524, 667
BpuMI	CCSGG	2 cut(s)	763, 764
Bsa29I	ATCGAT	1 cut(s)	1146
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	4 cut(s)	565, 706, 761, 762
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 136, 560, 1242
Bse118I	RCCGGY	2 cut(s)	61, 912
Bse1I	ACTGG	2 cut(s)	515, 1067
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	30, 385
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	1146
BseDI	CCNNGG	4 cut(s)	565, 706, 761, 762
BseGI	GGATG	2 cut(s)	361, 1024
BseLI	CCNNNNNNNGG	4 cut(s)	43, 136, 560, 1242
BseMI	GCAATG	2 cut(s)	30, 385
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	515, 1067
BseRI	GAGGAG	4 cut(s)	23, 293, 362, 704
BseSI	GKGCMC	1 cut(s)	1237
BseXI	GCAGC	3 cut(s)	130, 259, 785
BshFI	GGCC	4 cut(s)	175, 466, 564, 622
BshVI	ATCGAT	1 cut(s)	1146
BsiHKAI	GWGCWC	1 cut(s)	823
BsiHKCI	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
BsiSI	CCGG	4 cut(s)	62, 683, 763, 913
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	4 cut(s)	43, 136, 560, 1242
BsmAI	GTCTC	5 cut(s)	5, 332, 732, 1074, 1218
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	3 cut(s)	493, 515, 673
BsnI	GGCC	4 cut(s)	175, 466, 564, 622
BsoBI	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
Bsp119I	TTCGAA	1 cut(s)	934
Bsp1286I	GDGCHC	2 cut(s)	823, 1237
Bsp143I	GATC	3 cut(s)	427, 609, 804
BspACI	CCGC	5 cut(s)	137, 254, 634, 910, 1058
BspANI	GGCC	4 cut(s)	175, 466, 564, 622
BspCNI	CTCAG	1 cut(s)	175
BspDI	ATCGAT	1 cut(s)	1146
BspLI	GGNNCC	4 cut(s)	48, 55, 429, 806
BspMAI	CTGCAG	3 cut(s)	277, 775, 1042
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	5 cut(s)	422, 435, 604, 799, 812
BspT104I	TTCGAA	1 cut(s)	934
BspTI	CTTAAG	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	30, 385
BsrFI	RCCGGY	2 cut(s)	61, 912
BsrI	ACTGG	2 cut(s)	515, 1067
BssAI	RCCGGY	2 cut(s)	61, 912
BssECI	CCNNGG	4 cut(s)	565, 706, 761, 762
BssMI	GATC	3 cut(s)	427, 609, 804
BssNAI	GTATAC	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	703
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	706
Bst1107I	GTATAC	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	1220
BstACI	GRCGYC	1 cut(s)	703
BstAFI	CTTAAG	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	934
BstC8I	GCNNGC	2 cut(s)	63, 914
BstDEI	CTNAG	2 cut(s)	183, 617
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	361, 1024
BstHHI	GCGC	2 cut(s)	190, 828
BstKTI	GATC	3 cut(s)	430, 612, 807
BstMAI	GTCTC	5 cut(s)	5, 332, 732, 1074, 1218
BstMBI	GATC	3 cut(s)	427, 609, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	711, 832
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	3 cut(s)	49, 761, 762
BstSFI	CTRYAG	3 cut(s)	273, 771, 1038
BstSLI	GKGCMC	1 cut(s)	1237
BstV1I	GCAGC	3 cut(s)	130, 259, 785
BstV2I	GAAGAC	1 cut(s)	1255
BstX2I	RGATCY	3 cut(s)	427, 609, 804
BstYI	RGATCY	3 cut(s)	427, 609, 804
BstZ17I	GTATAC	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	1146
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	175, 466, 564, 622
BsuTUI	ATCGAT	1 cut(s)	1146
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	361, 1024
BtsI	GCAGTG	2 cut(s)	379, 821
BtsIMutI	CAGTG	3 cut(s)	379, 821, 1225
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	63, 914
CfoI	GCGC	2 cut(s)	190, 828
Cfr10I	RCCGGY	2 cut(s)	61, 912
Cfr13I	GGNCC	2 cut(s)	47, 53
Cfr9I	CCCGGG	1 cut(s)	762
ClaI	ATCGAT	1 cut(s)	1146
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	2 cut(s)	234, 475
CviAII	CATG	5 cut(s)	76, 468, 488, 925, 1213
CviQI	GTAC	2 cut(s)	234, 475
DdeI	CTNAG	2 cut(s)	183, 617
DpnI	GATC	3 cut(s)	429, 611, 806
DpnII	GATC	3 cut(s)	427, 609, 804
EaeI	YGGCCR	3 cut(s)	173, 464, 562
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	47, 53
Eco57I	CTGAAG	2 cut(s)	327, 902
Eco81I	CCTNAGG	1 cut(s)	183
Eco88I	CYCGRG	5 cut(s)	56, 729, 762, 816, 1090
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	706
EcoT22I	ATGCAT	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	5 cut(s)	79, 471, 491, 928, 1216
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	5 cut(s)	75, 467, 487, 924, 1212
FauI	CCCGC	2 cut(s)	247, 627
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	119, 273, 774, 1058
FokI	GGATG	2 cut(s)	368, 1011
Fsp4HI	GCNGC	4 cut(s)	119, 273, 774, 1058
FspBI	CTAG	2 cut(s)	423, 888
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	2 cut(s)	189, 827
GluI	GCNGC	4 cut(s)	119, 273, 774, 1058
HaeIII	GGCC	4 cut(s)	175, 466, 564, 622
HapII	CCGG	4 cut(s)	62, 683, 763, 913
HgaI	GACGC	1 cut(s)	711
HhaI	GCGC	2 cut(s)	190, 828
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	5 cut(s)	79, 471, 491, 928, 1216
Hin6I	GCGC	2 cut(s)	188, 826
HinP1I	GCGC	2 cut(s)	188, 826
HindIII	AAGCTT	3 cut(s)	141, 643, 1194
HpaII	CCGG	4 cut(s)	62, 683, 763, 913
HphI	GGTGA	2 cut(s)	17, 119
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	7 cut(s)	19, 205, 346, 499, 663, 1117, 1210
Hpy188III	TCNNGA	9 cut(s)	56, 413, 541, 581, 731, 816, 1052, 1090, 1179
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	2 cut(s)	168, 705
HpyAV	CCTTC	2 cut(s)	346, 1236
HpyCH4III	ACNGT	1 cut(s)	1220
HpyCH4V	TGCA	8 cut(s)	23, 275, 493, 503, 671, 773, 980, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	711, 832
HpyF3I	CTNAG	2 cut(s)	183, 617
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	5 cut(s)	79, 471, 491, 928, 1216
HspAI	GCGC	2 cut(s)	188, 826
KroI	GCCGGC	2 cut(s)	61, 912
KroNI	GCCGGC	2 cut(s)	63, 914
Kzo9I	GATC	3 cut(s)	427, 609, 804
Lsp1109I	GCAGC	3 cut(s)	130, 259, 785
LweI	GCATC	2 cut(s)	10, 490
MaeI	CTAG	2 cut(s)	423, 888
MaeIII	GTNAC	3 cut(s)	483, 532, 547
MalI	GATC	3 cut(s)	429, 611, 806
MboI	GATC	3 cut(s)	427, 609, 804
MboII	GAAGA	7 cut(s)	764, 948, 957, 1167, 1194, 1197, 1260
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	3 cut(s)	427, 609, 804
MhlI	GDGCHC	2 cut(s)	823, 1237
MlsI	TGGCCA	2 cut(s)	175, 466
MluCI	AATT	8 cut(s)	94, 103, 132, 215, 555, 837, 858, 1111
MluNI	TGGCCA	2 cut(s)	175, 466
MlyI	GAGTC	6 cut(s)	220, 544, 590, 1076, 1129, 1220
Mox20I	TGGCCA	2 cut(s)	175, 466
Mph1103I	ATGCAT	1 cut(s)	673
MroNI	GCCGGC	2 cut(s)	61, 912
MscI	TGGCCA	2 cut(s)	175, 466
MseI	TTAA	4 cut(s)	153, 606, 797, 869
MslI	CAYNNNNRTG	2 cut(s)	498, 1136
Msp20I	TGGCCA	2 cut(s)	175, 466
MspA1I	CMGCKG	2 cut(s)	776, 1136
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	4 cut(s)	62, 683, 763, 913
MspR9I	CCNGG	3 cut(s)	51, 763, 764
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	3 cut(s)	493, 515, 673
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	711, 832
NaeI	GCCGGC	2 cut(s)	63, 914
NciI	CCSGG	2 cut(s)	763, 764
NdeII	GATC	3 cut(s)	427, 609, 804
NgoMIV	GCCGGC	2 cut(s)	61, 912
NlaIII	CATG	5 cut(s)	79, 471, 491, 928, 1216
NlaIV	GGNNCC	4 cut(s)	48, 55, 429, 806
NmuCI	GTSAC	1 cut(s)	547
NsbI	TGCGCA	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	673
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	934
OliI	CACNNNNGTG	1 cut(s)	1136
PaeR7I	CTCGAG	2 cut(s)	816, 1090
PaqCI	CACCTGC	1 cut(s)	1045
PceI	AGGCCT	1 cut(s)	622
PciI	ACATGT	1 cut(s)	487
PctI	GAATGC	3 cut(s)	493, 515, 673
PdiI	GCCGGC	2 cut(s)	63, 914
PfeI	GAWTC	4 cut(s)	40, 227, 697, 1148
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	120, 274, 775, 1059
PleI	GAGTC	6 cut(s)	219, 544, 590, 1076, 1128, 1220
PpsI	GAGTC	6 cut(s)	219, 544, 590, 1076, 1128, 1220
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	153
PsiI	TTATAA	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	48, 55, 429, 806
PspPI	GGNCC	2 cut(s)	47, 53
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	3 cut(s)	277, 775, 1042
PsuI	RGATCY	3 cut(s)	427, 609, 804
PvuII	CAGCTG	2 cut(s)	776, 1136
RsaI	GTAC	2 cut(s)	235, 476
RsaNI	GTAC	2 cut(s)	234, 475
RseI	CAYNNNNRTG	2 cut(s)	498, 1136
SaqAI	TTAA	4 cut(s)	153, 606, 797, 869
SatI	GCNGC	4 cut(s)	119, 273, 774, 1058
Sau3AI	GATC	3 cut(s)	427, 609, 804
Sau96I	GGNCC	2 cut(s)	47, 53
SchI	GAGTC	6 cut(s)	220, 544, 590, 1076, 1129, 1220
ScrFI	CCNGG	3 cut(s)	51, 763, 764
SduI	GDGCHC	2 cut(s)	823, 1237
SfaNI	GCATC	2 cut(s)	10, 490
SfcI	CTRYAG	3 cut(s)	273, 771, 1038
Sfr274I	CTCGAG	2 cut(s)	816, 1090
SfuI	TTCGAA	1 cut(s)	934
SinI	GGWCC	2 cut(s)	47, 53
SlaI	CTCGAG	2 cut(s)	816, 1090
SmaI	CCCGGG	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	498, 1136
SmlI	CTYRAG	5 cut(s)	539, 605, 646, 816, 1090
SmoI	CTYRAG	5 cut(s)	539, 605, 646, 816, 1090
Sse9I	AATT	8 cut(s)	94, 103, 132, 215, 555, 837, 858, 1111
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	5 cut(s)	137, 254, 634, 910, 1058
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	2 cut(s)	423, 888
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	49, 761, 762
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	1 cut(s)	1220
TaqI	TCGA	9 cut(s)	80, 163, 225, 239, 700, 817, 934, 1091, 1146
TasI	AATT	8 cut(s)	94, 103, 132, 215, 555, 837, 858, 1111
TauI	GCSGC	1 cut(s)	1060
TfiI	GAWTC	4 cut(s)	40, 227, 697, 1148
Tru1I	TTAA	4 cut(s)	153, 606, 797, 869
Tru9I	TTAA	4 cut(s)	153, 606, 797, 869
TscAI	CASTG	3 cut(s)	379, 828, 1225
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	118, 272, 773
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	41, 1161, 1206
TspGWI	ACGGA	1 cut(s)	181
TspMI	CCCGGG	1 cut(s)	762
TspRI	CASTG	3 cut(s)	379, 828, 1225
Van91I	CCANNNNNTGG	1 cut(s)	560
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	47, 53
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	3 cut(s)	94, 837, 1111
XceI	RCATGY	1 cut(s)	491
XhoI	CTCGAG	2 cut(s)	816, 1090
XmaI	CCCGGG	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	2 cut(s)	423, 888
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.