Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Forward (+)

24770857 .. 24771978

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGAGGAGACATCTGATGCAATGAACCTTGACCTGAATCTGGGTCCTGGCCCCGAGCCGGCTTCTGCCACCATGTCAAATGAGCCTGTGAATTTGGAGAATTGGATTGACCAGCAGCCTATGCACCAAATTCCGCAAGTTTTTGGAATTAGTCCGTTTCGACGGAGATGGCCGCAACCTGAAGCGCATAATGTTTGGTCAGAGTTGAATCAATTGATGGTCGATTCTGGAACTTCGAGTATACTAAAAGCAGGGGAGGGTAGCAGTGTTGCTGCGGAGGAAAGAAGCAACGATGTGCCTAAAAAGTGTGAAATTATCAATGGGATCTTAGAAAATAAGACTTCAGAGGAGAAGGATGATGTTGAAAAGAGAAGTGGCAATGATGGTAGCTTTTTTTATTGTAATATTTGTCTGGACTTGGCTAGGGAACCTGAATGCCCATTTTGTCAGGGAGAGGTAACTCTCAAGAATGTGACTCCAATTTATGGCCGTGGGAACAATGTTCATGAGCCAGATGACGACTCAAATCTTAAGATCCCCCTTAGGCCTCAAGCACGGCGGGTTGAAAAGTTTGCCTCAACCATTCGGAGGAGTGCATTTACTTTTCCGGTGGAGGACATGATTCGACACCTTGGAAGCAGATTTGATTTGTCTCGGGATTTGGTTCAGCCAACAGAAGATACTCCCCGGGAAACTGCAACAGAAAGAACAAATGGCTTGTTAAATTGGATTCTGACATCACAAGCACTGCGCAGAGAGCAAAATCAGTTGGCACAACCTGAAATTATGGATTTAACGCAAGACAACATTACTAGCCTTGATACAGGAGAAAACCGCCGGCTTCAATCCATGCTACTTCGAAGAACACAATCACATAGAGCAACACTTTCTTCTCTGTCATCTGCATTGAGTTCTGCTGAAAGGTTGGTGGAGGCATATTTCCAATTTTCCATAACCATCCTATTACACCTGCAGTTAGAAATCAAGAGCCGCCTCCCCCAGTTGATGATAGAGACTCTTTCTCGAGTATTCAAGCTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

348

Amino Acids

39.38

Weight (kDa)

5.14

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1045
AarI	CACCTGC	1 cut(s)	981
Acc16I	TGCGCA	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	981
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	6 cut(s)	137, 176, 278, 562, 838, 994
AclWI	GGATC	2 cut(s)	335, 532
AcoI	YGGCCR	2 cut(s)	173, 490
AcsI	RAATTY	2 cut(s)	94, 132
AcuI	CTGAAG	2 cut(s)	204, 330
AfiI	CCNNNNNNNGG	4 cut(s)	43, 61, 488, 591
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	211, 368, 569, 848, 1036
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	393, 1039
AluI	AGCT	2 cut(s)	393, 1039
Alw26I	GTCTC	3 cut(s)	5, 660, 1010
AlwI	GGATC	2 cut(s)	335, 532
Ama87I	CYCGRG	4 cut(s)	56, 657, 690, 1026
AoxI	GGCC	4 cut(s)	52, 173, 490, 548
ApeKI	GCWGC	2 cut(s)	118, 275
ApoI	RAATTY	2 cut(s)	94, 132
AspLEI	GCGC	2 cut(s)	190, 756
AspS9I	GGNCC	2 cut(s)	47, 53
AsuC2I	CCSGG	2 cut(s)	691, 692
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	862
AvaI	CYCGRG	4 cut(s)	56, 657, 690, 1026
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	130, 262
BccI	CCATC	4 cut(s)	165, 214, 380, 968
BceAI	ACGGC	2 cut(s)	477, 575
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	2 cut(s)	691, 692
BcoDI	GTCTC	3 cut(s)	5, 660, 1010
BfaI	CTAG	2 cut(s)	426, 816
BfmI	CTRYAG	1 cut(s)	974
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	981
BisI	GCNGC	4 cut(s)	119, 176, 276, 994
BlsI	GCNGC	4 cut(s)	120, 177, 277, 995
Bme1390I	CCNGG	3 cut(s)	51, 691, 692
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	4 cut(s)	56, 657, 690, 1026
BmgT120I	GGNCC	2 cut(s)	47, 53
BmiI	GGNNCC	3 cut(s)	48, 55, 432
BmrFI	CCNGG	3 cut(s)	51, 691, 692
BmrI	ACTGGG	1 cut(s)	997
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	997
Bpu14I	TTCGAA	1 cut(s)	862
BpuEI	CTTGAG	2 cut(s)	452, 537
BpuMI	CCSGG	2 cut(s)	691, 692
BsaJI	CCNNGG	4 cut(s)	493, 634, 689, 690
BsaWI	WCCGGW	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 61, 488, 591
Bse118I	RCCGGY	2 cut(s)	61, 840
Bse1I	ACTGG	1 cut(s)	1003
Bse21I	CCTNAGG	1 cut(s)	545
Bse3DI	GCAATG	2 cut(s)	30, 388
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	4 cut(s)	493, 634, 689, 690
BseGI	GGATG	2 cut(s)	364, 960
BseLI	CCNNNNNNNGG	4 cut(s)	43, 61, 488, 591
BseMI	GCAATG	2 cut(s)	30, 388
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	3 cut(s)	23, 365, 607
BseXI	GCAGC	2 cut(s)	130, 262
BshFI	GGCC	4 cut(s)	54, 175, 492, 550
BsiHKCI	CYCGRG	4 cut(s)	56, 657, 690, 1026
BsiSI	CCGG	4 cut(s)	62, 611, 691, 841
BslI	CCNNNNNNNGG	4 cut(s)	43, 61, 488, 591
BsmAI	GTCTC	3 cut(s)	5, 660, 1010
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	54, 175, 492, 550
BsoBI	CYCGRG	4 cut(s)	56, 657, 690, 1026
Bsp119I	TTCGAA	1 cut(s)	862
Bsp143I	GATC	2 cut(s)	327, 537
BspACI	CCGC	6 cut(s)	137, 176, 278, 562, 838, 994
BspANI	GGCC	4 cut(s)	54, 175, 492, 550
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	3 cut(s)	48, 55, 432
BspMAI	CTGCAG	1 cut(s)	978
BspMI	ACCTGC	1 cut(s)	981
BspPI	GGATC	2 cut(s)	335, 532
BspT104I	TTCGAA	1 cut(s)	862
BspTI	CTTAAG	1 cut(s)	533
BsrDI	GCAATG	2 cut(s)	30, 388
BsrFI	RCCGGY	2 cut(s)	61, 840
BsrI	ACTGG	1 cut(s)	1003
BssAI	RCCGGY	2 cut(s)	61, 840
BssECI	CCNNGG	4 cut(s)	493, 634, 689, 690
BssMI	GATC	2 cut(s)	327, 537
BssNAI	GTATAC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	634
Bst1107I	GTATAC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	2 cut(s)	63, 842
BstDEI	CTNAG	2 cut(s)	331, 545
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	364, 960
BstHHI	GCGC	2 cut(s)	190, 756
BstKTI	GATC	2 cut(s)	330, 540
BstMAI	GTCTC	3 cut(s)	5, 660, 1010
BstMBI	GATC	2 cut(s)	327, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 760
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	49, 689, 690
BstSFI	CTRYAG	1 cut(s)	974
BstV1I	GCAGC	2 cut(s)	130, 262
BstX2I	RGATCY	2 cut(s)	327, 537
BstYI	RGATCY	2 cut(s)	327, 537
BstZ17I	GTATAC	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	54, 175, 492, 550
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	364, 960
BtsI	GCAGTG	2 cut(s)	274, 749
BtsIMutI	CAGTG	2 cut(s)	274, 749
BveI	ACCTGC	1 cut(s)	981
Cac8I	GCNNGC	2 cut(s)	63, 842
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	2 cut(s)	190, 756
Cfr10I	RCCGGY	2 cut(s)	61, 840
Cfr13I	GGNCC	2 cut(s)	47, 53
Cfr9I	CCCGGG	1 cut(s)	690
CviAII	CATG	4 cut(s)	76, 509, 622, 853
DdeI	CTNAG	2 cut(s)	331, 545
DpnI	GATC	2 cut(s)	329, 539
DpnII	GATC	2 cut(s)	327, 537
EaeI	YGGCCR	2 cut(s)	173, 490
Eco130I	CCWWGG	1 cut(s)	634
Eco147I	AGGCCT	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	204, 330
Eco81I	CCTNAGG	1 cut(s)	545
Eco88I	CYCGRG	4 cut(s)	56, 657, 690, 1026
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	4 cut(s)	79, 512, 625, 856
FatI	CATG	4 cut(s)	75, 508, 621, 852
FauI	CCCGC	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	119, 176, 276, 994
FokI	GGATG	2 cut(s)	371, 947
Fsp4HI	GCNGC	4 cut(s)	119, 176, 276, 994
FspBI	CTAG	2 cut(s)	426, 816
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	2 cut(s)	189, 755
GluI	GCNGC	4 cut(s)	119, 176, 276, 994
HaeIII	GGCC	4 cut(s)	54, 175, 492, 550
HapII	CCGG	4 cut(s)	62, 611, 691, 841
HhaI	GCGC	2 cut(s)	190, 756
Hin1II	CATG	4 cut(s)	79, 512, 625, 856
Hin6I	GCGC	2 cut(s)	188, 754
HinP1I	GCGC	2 cut(s)	188, 754
HinfI	GANTC	8 cut(s)	40, 211, 227, 478, 524, 625, 733, 1018
HpaII	CCGG	4 cut(s)	62, 611, 691, 841
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	5 cut(s)	19, 205, 349, 591, 738
Hpy188III	TCNNGA	7 cut(s)	231, 416, 469, 509, 659, 988, 1026
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	23, 127, 599, 701, 908, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 760
HpyF3I	CTNAG	2 cut(s)	331, 545
Hsp92II	CATG	4 cut(s)	79, 512, 625, 856
HspAI	GCGC	2 cut(s)	188, 754
KroI	GCCGGC	2 cut(s)	61, 840
KroNI	GCCGGC	2 cut(s)	63, 842
Kzo9I	GATC	2 cut(s)	327, 537
Lsp1109I	GCAGC	2 cut(s)	130, 262
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	426, 816
MaeIII	GTNAC	2 cut(s)	460, 475
MalI	GATC	2 cut(s)	329, 539
MboI	GATC	2 cut(s)	327, 537
MboII	GAAGA	3 cut(s)	692, 876, 885
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	2 cut(s)	327, 537
MlyI	GAGTC	3 cut(s)	472, 518, 1012
MroNI	GCCGGC	2 cut(s)	61, 840
MseI	TTAA	3 cut(s)	534, 725, 797
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	4 cut(s)	62, 611, 691, 841
MspR9I	CCNGG	3 cut(s)	51, 691, 692
MunI	CAATTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	124, 760
NaeI	GCCGGC	2 cut(s)	63, 842
NciI	CCSGG	2 cut(s)	691, 692
NdeII	GATC	2 cut(s)	327, 537
NgoMIV	GCCGGC	2 cut(s)	61, 840
NlaIII	CATG	4 cut(s)	79, 512, 625, 856
NlaIV	GGNNCC	3 cut(s)	48, 55, 432
NmuCI	GTSAC	1 cut(s)	475
NsbI	TGCGCA	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	862
PaeR7I	CTCGAG	1 cut(s)	1026
PagI	TCATGA	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	981
PceI	AGGCCT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	443
PdiI	GCCGGC	2 cut(s)	63, 842
PfeI	GAWTC	5 cut(s)	40, 211, 227, 625, 733
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	4 cut(s)	120, 177, 277, 995
PleI	GAGTC	3 cut(s)	472, 518, 1012
PpsI	GAGTC	3 cut(s)	472, 518, 1012
PpuMI	RGGWCCY	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	48, 55, 432
PspPI	GGNCC	2 cut(s)	47, 53
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	978
PsuI	RGATCY	2 cut(s)	327, 537
SaqAI	TTAA	3 cut(s)	534, 725, 797
SatI	GCNGC	4 cut(s)	119, 176, 276, 994
Sau3AI	GATC	2 cut(s)	327, 537
Sau96I	GGNCC	2 cut(s)	47, 53
SchI	GAGTC	3 cut(s)	472, 518, 1012
ScrFI	CCNGG	3 cut(s)	51, 691, 692
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	974
Sfr274I	CTCGAG	1 cut(s)	1026
SfuI	TTCGAA	1 cut(s)	862
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	1026
SmaI	CCCGGG	1 cut(s)	692
SmlI	CTYRAG	4 cut(s)	467, 533, 552, 1026
SmoI	CTYRAG	4 cut(s)	467, 533, 552, 1026
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	6 cut(s)	137, 176, 278, 562, 838, 994
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	2 cut(s)	426, 816
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	3 cut(s)	49, 689, 690
StyI	CCWWGG	1 cut(s)	634
TaqI	TCGA	6 cut(s)	163, 225, 239, 628, 862, 1027
TauI	GCSGC	2 cut(s)	178, 996
TfiI	GAWTC	5 cut(s)	40, 211, 227, 625, 733
Tru1I	TTAA	3 cut(s)	534, 725, 797
Tru9I	TTAA	3 cut(s)	534, 725, 797
TscAI	CASTG	2 cut(s)	274, 756
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	118, 275
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	2 cut(s)	41, 497
TspGWI	ACGGA	2 cut(s)	147, 181
TspMI	CCCGGG	1 cut(s)	690
TspRI	CASTG	2 cut(s)	274, 756
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	94, 132
XhoI	CTCGAG	1 cut(s)	1026
XmaI	CCCGGG	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	2 cut(s)	426, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.