Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Forward (+)

5764812 .. 5767027

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1056100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACAGGTACGTCTGATGCAATGAACCTTGACCTGAATCTGGGTCCTGGTCCTGATGCTGGCTTGATGTCAAATGACCCTGTAAATTTTGATTTGACTCGGGATGTTATTCATCCATCAGAGCCTGAGAATACCTGGGAAGCAGCAGAAAGAACTAATTTGTTAAATAGGATTCTGACATCTCGAGGACTGCGCAGAGAGCAAAATCCAGTGGTACTTGCAGATGATGTTGTGGATTTAACGCAAAGCAACGTGACTGGTGTTGAAACAAGGGAAAACCGCCAACTTCAGTCCTTGCTACTCAAAAGGACACAATCGCACAGAGCAACACAATCTTCTCTCTCGTCTGCATTGAGTTCTGCTGAAAGAGCCAACTGGACACAGGTGTGGAAATTTGTTCCATGGTTTACCTTTCAACTTCATCTTCCAGAAGAAGAAATGATTTGTCAAGAGTTTCGGACATGGACAGTGGAGATTCTCGTGCCCACAGAAGAAGAAGACTTAACTGAAAGCATCTTCTTCAGCCCACAGCAGCCTGCACCAGTTGCTGATAGAGATTCTTTCTCAAGTATTACTGCTGTTATAAATTCAGAAAGCCAACTGGACACAGCTGTGGAAATCGATTTCATGGTTTCCCTTTCAACTTCATCTTCCAGAGGAAGAAGTGATTCGTCAAGGGTTTCGGACATGGACAGTGGAGATTCTCGTGCCGCCAGAAGAAGACTGAACGGAAGCATCTTCTTCAGTTCACCAAACGTTATCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

4.59

Isoelectric Point (pI)

63.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc16I	TGCGCA	1 cut(s)	194
AciI	CCGC	2 cut(s)	280, 711
AclI	AACGTT	1 cut(s)	756
AcsI	RAATTY	3 cut(s)	85, 392, 586
AcuI	CTGAAG	3 cut(s)	272, 505, 727
AfaI	GTAC	2 cut(s)	10, 216
AfiI	CCNNNNNNNGG	2 cut(s)	40, 59
AgsI	TTSAA	3 cut(s)	266, 416, 642
AjnI	CCWGG	2 cut(s)	46, 134
AleI	CACNNNNGTG	2 cut(s)	385, 611
AluBI	AGCT	1 cut(s)	611
AluI	AGCT	1 cut(s)	611
AlwNI	CAGNNNCTG	2 cut(s)	125, 548
Ama87I	CYCGRG	2 cut(s)	99, 183
ApeKI	GCWGC	2 cut(s)	143, 532
ApoI	RAATTY	3 cut(s)	85, 392, 586
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	44, 50
AsuHPI	GGTGA	1 cut(s)	741
AvaI	CYCGRG	2 cut(s)	99, 183
AvaII	GGWCC	2 cut(s)	44, 50
BaeGI	GKGCMC	1 cut(s)	486
BauI	CACGAG	2 cut(s)	479, 705
BbsI	GAAGAC	2 cut(s)	504, 727
BbvI	GCAGC	2 cut(s)	155, 544
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	48, 136
BisI	GCNGC	3 cut(s)	144, 533, 711
BlsI	GCNGC	3 cut(s)	145, 534, 712
Bme1390I	CCNGG	2 cut(s)	48, 136
Bme18I	GGWCC	2 cut(s)	44, 50
BmeT110I	CYCGRG	2 cut(s)	99, 183
BmgT120I	GGNCC	2 cut(s)	44, 50
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	48, 136
BmsI	GCATC	4 cut(s)	7, 46, 522, 744
BpiI	GAAGAC	2 cut(s)	504, 727
BpuEI	CTTGAG	1 cut(s)	550
Bsa29I	ATCGAT	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	135, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 59
Bse1I	ACTGG	5 cut(s)	209, 262, 380, 542, 606
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	48, 136
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	135, 401
BseGI	GGATG	2 cut(s)	109, 112
BseLI	CCNNNNNNNGG	2 cut(s)	40, 59
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	5 cut(s)	209, 262, 380, 542, 606
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	155, 544
BsgI	GTGCAG	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	621
BsiHKCI	CYCGRG	2 cut(s)	99, 183
BslI	CCNNNNNNNGG	2 cut(s)	40, 59
BsoBI	CYCGRG	2 cut(s)	99, 183
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	2 cut(s)	280, 711
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	5 cut(s)	209, 262, 380, 542, 606
BssECI	CCNNGG	2 cut(s)	135, 401
BssSI	CACGAG	2 cut(s)	479, 705
BssT1I	CCWWGG	1 cut(s)	401
Bst2BI	CACGAG	2 cut(s)	479, 705
Bst2UI	CCWGG	2 cut(s)	48, 136
Bst4CI	ACNGT	2 cut(s)	469, 695
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	61, 537
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	109, 112
BstHHI	GCGC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	199, 368, 545
BstNI	CCWGG	2 cut(s)	48, 136
BstSCI	CCNGG	2 cut(s)	46, 134
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	155, 544
BstV2I	GAAGAC	2 cut(s)	504, 727
Bsu15I	ATCGAT	1 cut(s)	621
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	109, 112
BtsIMutI	CAGTG	3 cut(s)	216, 474, 700
Cac8I	GCNNGC	2 cut(s)	61, 537
CaiI	CAGNNNCTG	2 cut(s)	125, 548
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	44, 50
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	9, 215
CviAII	CATG	4 cut(s)	402, 462, 628, 688
CviJI	RGCY	7 cut(s)	63, 124, 371, 525, 535, 597, 611
CviKI_1	RGCY	7 cut(s)	63, 124, 371, 525, 535, 597, 611
CviQI	GTAC	2 cut(s)	9, 215
DdeI	CTNAG	1 cut(s)	126
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	44, 50
Eco57I	CTGAAG	3 cut(s)	272, 505, 727
Eco88I	CYCGRG	2 cut(s)	99, 183
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	46, 134
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	405, 465, 631, 691
FaiI	YATR	5 cut(s)	403, 463, 584, 629, 689
FatI	CATG	4 cut(s)	401, 461, 627, 687
Fnu4HI	GCNGC	3 cut(s)	144, 533, 711
FokI	GGATG	2 cut(s)	99, 116
Fsp4HI	GCNGC	3 cut(s)	144, 533, 711
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	144, 533, 711
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	4 cut(s)	405, 465, 631, 691
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	7 cut(s)	37, 97, 172, 475, 557, 668, 701
HphI	GGTGA	1 cut(s)	741
Hpy166II	GTNNAC	2 cut(s)	408, 749
Hpy188I	TCNGA	6 cut(s)	16, 121, 177, 459, 592, 685
Hpy188III	TCNNGA	6 cut(s)	53, 101, 183, 428, 449, 654
Hpy8I	GTNNAC	2 cut(s)	408, 749
HpyCH4III	ACNGT	2 cut(s)	469, 695
HpyCH4IV	ACGT	3 cut(s)	11, 252, 756
HpyCH4V	TGCA	4 cut(s)	20, 221, 350, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	199, 368, 545
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	3 cut(s)	11, 252, 756
Hsp92II	CATG	4 cut(s)	405, 465, 631, 691
HspAI	GCGC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	155, 544
LweI	GCATC	4 cut(s)	7, 46, 522, 744
MaeII	ACGT	3 cut(s)	11, 252, 756
MaeIII	GTNAC	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	4 cut(s)	85, 157, 392, 586
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	179, 650
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	3 cut(s)	164, 239, 503
MslI	CAYNNNNRTG	2 cut(s)	385, 611
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	48, 136
MvaI	CCWGG	2 cut(s)	48, 136
MwoI	GCNNNNNNNGC	3 cut(s)	199, 368, 545
NcoI	CCATGG	1 cut(s)	401
NlaIII	CATG	4 cut(s)	405, 465, 631, 691
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	253
NsbI	TGCGCA	1 cut(s)	194
OliI	CACNNNNGTG	2 cut(s)	385, 611
PaeR7I	CTCGAG	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	6 cut(s)	37, 172, 475, 557, 668, 701
PkrI	GCNGC	3 cut(s)	145, 534, 712
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	584
Psp1406I	AACGTT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	46, 134
PspGI	CCWGG	2 cut(s)	46, 134
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	44, 50
PspPPI	RGGWCCY	1 cut(s)	44
PstNI	CAGNNNCTG	2 cut(s)	125, 548
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	10, 216
RsaNI	GTAC	2 cut(s)	9, 215
RseI	CAYNNNNRTG	2 cut(s)	385, 611
SaqAI	TTAA	3 cut(s)	164, 239, 503
SatI	GCNGC	3 cut(s)	144, 533, 711
Sau96I	GGNCC	2 cut(s)	44, 50
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	48, 136
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	4 cut(s)	7, 46, 522, 744
Sfr274I	CTCGAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	44, 50
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	2 cut(s)	385, 611
SmlI	CTYRAG	2 cut(s)	183, 565
SmoI	CTYRAG	2 cut(s)	183, 565
Sse9I	AATT	4 cut(s)	85, 157, 392, 586
SsiI	CCGC	2 cut(s)	280, 711
StyD4I	CCNGG	2 cut(s)	46, 134
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	469, 695
TaiI	ACGT	3 cut(s)	14, 255, 759
TaqI	TCGA	2 cut(s)	184, 621
TasI	AATT	4 cut(s)	85, 157, 392, 586
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	6 cut(s)	37, 172, 475, 557, 668, 701
Tru1I	TTAA	3 cut(s)	164, 239, 503
Tru9I	TTAA	3 cut(s)	164, 239, 503
TscAI	CASTG	3 cut(s)	216, 474, 700
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	143, 532
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	38, 101, 410, 616, 636
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	216, 474, 700
VpaK11BI	GGWCC	2 cut(s)	44, 50
XapI	RAATTY	3 cut(s)	85, 392, 586
XhoI	CTCGAG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.