Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006208.1

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Reverse (-)

3654 .. 4721

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006208.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgggtgaggagacatctgatgcaatgaaccttgacctgaatctgggtcctggccccgagccggcttctgccaccatgtcggatgagcctgtgaatttggagaattggattgaccagcggcctatgcaccaaatgccggaagtttttgggattagtccgtttcgacggagatggccgcaacctgcagcgcataatgtttggtcagaaagaacaaatggcttgttaaataggattctgacatctcgagcactgcgcagagagcaaaatcagttggcacaagctgaaattgtggatgttaagcaagacaacattactagccttgatacaggagaaaaccgccggcttcagtccatgctacttcgaagaacacaatcacatagagcaacactttcttctctgtcatctgcgttgagttctgctgaaaggttggtggaggcatatttccataaccatcctattacacctgcagttagaaatcaagaatcgcctcccccagttgatgatagagactctttctcgagtagtcaagctgttataaattcagagagtcaaatggacacagctgtggaaatcgattcaatggtttccctttcagcttcaccttccagaagaagaaatgaagcttcaagggtttcagacatggacagtgaagagccatgtgttcaaacttcaaagatcgagggccgatgcagcatcggcgatgctacgcaagatgacgactcaaatcttaagatccctcttaggcctcaagcaccgcgggatgaaagcttgaggcaaactattcagaggagtgcatttacttttcccgtggaggagataaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

274

Amino Acids

30.7

Weight (kDa)

5.02

Isoelectric Point (pI)

82.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	472
Acc16I	TGCGCA	1 cut(s)	254
Acc36I	ACCTGC	2 cut(s)	190, 472
AccII	CGCG	1 cut(s)	757
AciI	CCGC	5 cut(s)	118, 176, 337, 755, 757
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	94, 538
AcuI	CTGAAG	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	43, 61, 136
AflII	CTTAAG	1 cut(s)	728
AgsI	TTSAA	4 cut(s)	579, 627, 665, 672
AjnI	CCWGG	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	6 cut(s)	281, 530, 563, 596, 623, 768
AluI	AGCT	6 cut(s)	281, 530, 563, 596, 623, 768
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	5, 501
AlwI	GGATC	1 cut(s)	727
Ama87I	CYCGRG	3 cut(s)	56, 243, 517
AoxI	GGCC	5 cut(s)	52, 119, 173, 682, 743
ApeKI	GCWGC	2 cut(s)	185, 690
ApoI	RAATTY	2 cut(s)	94, 538
AspLEI	GCGC	2 cut(s)	190, 255
AspS9I	GGNCC	3 cut(s)	47, 53, 682
AsuHPI	GGTGA	2 cut(s)	17, 591
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	3 cut(s)	56, 243, 517
AvaII	GGWCC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	197, 702
BccI	CCATC	2 cut(s)	165, 459
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	5, 501
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	183, 465
BfrI	CTTAAG	1 cut(s)	728
BfuAI	ACCTGC	2 cut(s)	190, 472
BisI	GCNGC	4 cut(s)	119, 176, 186, 691
BlsI	GCNGC	4 cut(s)	120, 177, 187, 692
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	3 cut(s)	56, 243, 517
BmgT120I	GGNCC	3 cut(s)	47, 53, 682
BmiI	GGNNCC	2 cut(s)	48, 55
BmrFI	CCNGG	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	4 cut(s)	10, 677, 691, 702
BmuI	ACTGGG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	2 cut(s)	732, 790
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	755, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 61, 136
Bse118I	RCCGGY	2 cut(s)	61, 339
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	755, 807
BseGI	GGATG	4 cut(s)	88, 298, 451, 766
BseLI	CCNNNNNNNGG	3 cut(s)	43, 61, 136
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	23, 802
BseXI	GCAGC	2 cut(s)	197, 702
Bsh1236I	CGCG	1 cut(s)	757
BshFI	GGCC	5 cut(s)	54, 121, 175, 684, 745
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	3 cut(s)	56, 243, 517
BsiSI	CCGG	3 cut(s)	62, 137, 340
BslI	CCNNNNNNNGG	3 cut(s)	43, 61, 136
BsmAI	GTCTC	2 cut(s)	5, 501
BsnI	GGCC	5 cut(s)	54, 121, 175, 684, 745
BsoBI	CYCGRG	3 cut(s)	56, 243, 517
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	675, 732
BspACI	CCGC	5 cut(s)	118, 176, 337, 755, 757
BspANI	GGCC	5 cut(s)	54, 121, 175, 684, 745
BspDI	ATCGAT	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	48, 55
BspMAI	CTGCAG	2 cut(s)	187, 469
BspMI	ACCTGC	2 cut(s)	190, 472
BspPI	GGATC	1 cut(s)	727
BspQI	GCTCTTC	1 cut(s)	645
BspT104I	TTCGAA	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	2 cut(s)	61, 339
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	2 cut(s)	61, 339
BssECI	CCNNGG	2 cut(s)	755, 807
BssMI	GATC	2 cut(s)	675, 732
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	728
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	63, 341
BstDEI	CTNAG	1 cut(s)	740
BstDSI	CCRYGG	2 cut(s)	755, 807
BstF5I	GGATG	4 cut(s)	88, 298, 451, 766
BstFNI	CGCG	1 cut(s)	757
BstHHI	GCGC	2 cut(s)	190, 255
BstKTI	GATC	2 cut(s)	678, 735
BstMAI	GTCTC	2 cut(s)	5, 501
BstMBI	GATC	2 cut(s)	675, 732
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 133, 259, 690, 696
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	183, 465
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	197, 702
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	5 cut(s)	54, 121, 175, 684, 745
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	2 cut(s)	755, 807
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	88, 298, 451, 766
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	248, 652
BveI	ACCTGC	2 cut(s)	190, 472
Cac8I	GCNNGC	2 cut(s)	63, 341
CfoI	GCGC	2 cut(s)	190, 255
Cfr10I	RCCGGY	2 cut(s)	61, 339
Cfr13I	GGNCC	3 cut(s)	47, 53, 682
Cfr42I	CCGCGG	1 cut(s)	758
ClaI	ATCGAT	1 cut(s)	573
CviAII	CATG	4 cut(s)	76, 352, 640, 657
DdeI	CTNAG	1 cut(s)	740
DpnI	GATC	2 cut(s)	677, 734
DpnII	GATC	2 cut(s)	675, 732
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	3 cut(s)	56, 243, 517
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	4 cut(s)	79, 355, 643, 660
FatI	CATG	4 cut(s)	75, 351, 639, 656
FauI	CCCGC	1 cut(s)	750
Fnu4HI	GCNGC	4 cut(s)	119, 176, 186, 691
FokI	GGATG	4 cut(s)	95, 305, 438, 773
Fsp4HI	GCNGC	4 cut(s)	119, 176, 186, 691
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	2 cut(s)	189, 254
GluI	GCNGC	4 cut(s)	119, 176, 186, 691
HaeIII	GGCC	5 cut(s)	54, 121, 175, 684, 745
HapII	CCGG	3 cut(s)	62, 137, 340
HhaI	GCGC	2 cut(s)	190, 255
Hin1II	CATG	4 cut(s)	79, 355, 643, 660
Hin6I	GCGC	2 cut(s)	188, 253
HinP1I	GCGC	2 cut(s)	188, 253
HindIII	AAGCTT	2 cut(s)	621, 766
HinfI	GANTC	7 cut(s)	40, 232, 482, 509, 547, 575, 719
HpaII	CCGG	3 cut(s)	62, 137, 340
HphI	GGTGA	2 cut(s)	17, 591
Hpy188I	TCNGA	7 cut(s)	19, 82, 205, 237, 544, 637, 786
Hpy188III	TCNNGA	4 cut(s)	243, 479, 517, 606
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	612
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4V	TGCA	6 cut(s)	23, 127, 185, 467, 690, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 133, 259, 690, 696
HpyF3I	CTNAG	1 cut(s)	740
Hsp92II	CATG	4 cut(s)	79, 355, 643, 660
HspAI	GCGC	2 cut(s)	188, 253
KroI	GCCGGC	2 cut(s)	61, 339
KroNI	GCCGGC	2 cut(s)	63, 341
KspI	CCGCGG	1 cut(s)	758
Kzo9I	GATC	2 cut(s)	675, 732
LguI	GCTCTTC	1 cut(s)	645
Lsp1109I	GCAGC	2 cut(s)	197, 702
LweI	GCATC	4 cut(s)	10, 677, 691, 702
MaeI	CTAG	1 cut(s)	315
MalI	GATC	2 cut(s)	677, 734
MboI	GATC	2 cut(s)	675, 732
MboII	GAAGA	5 cut(s)	375, 384, 621, 624, 662
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	4 cut(s)	94, 103, 285, 538
MlyI	GAGTC	3 cut(s)	503, 556, 713
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	427, 498, 673, 747, 756, 765, 780, 805
MroNI	GCCGGC	2 cut(s)	61, 339
MseI	TTAA	3 cut(s)	224, 297, 729
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	3 cut(s)	118, 563, 757
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	3 cut(s)	62, 137, 340
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	5 cut(s)	124, 133, 259, 690, 696
NaeI	GCCGGC	2 cut(s)	63, 341
NdeII	GATC	2 cut(s)	675, 732
NgoMIV	GCCGGC	2 cut(s)	61, 339
NlaIII	CATG	4 cut(s)	79, 355, 643, 660
NlaIV	GGNNCC	2 cut(s)	48, 55
NsbI	TGCGCA	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	563
PaeR7I	CTCGAG	2 cut(s)	243, 517
PaqCI	CACCTGC	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	645
PdiI	GCCGGC	2 cut(s)	63, 341
PfeI	GAWTC	4 cut(s)	40, 232, 482, 575
PkrI	GCNGC	4 cut(s)	120, 177, 187, 692
PleI	GAGTC	3 cut(s)	503, 555, 713
PpsI	GAGTC	3 cut(s)	503, 555, 713
PpuMI	RGGWCCY	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	48, 55
PspPI	GGNCC	3 cut(s)	47, 53, 682
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	2 cut(s)	187, 469
PsuI	RGATCY	1 cut(s)	732
PvuII	CAGCTG	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	563
SacII	CCGCGG	1 cut(s)	758
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	224, 297, 729
SatI	GCNGC	4 cut(s)	119, 176, 186, 691
Sau3AI	GATC	2 cut(s)	675, 732
Sau96I	GGNCC	3 cut(s)	47, 53, 682
SchI	GAGTC	3 cut(s)	503, 556, 713
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	4 cut(s)	10, 677, 691, 702
SfcI	CTRYAG	2 cut(s)	183, 465
Sfr274I	CTCGAG	2 cut(s)	243, 517
Sfr303I	CCGCGG	1 cut(s)	758
SfuI	TTCGAA	1 cut(s)	361
SgrBI	CCGCGG	1 cut(s)	758
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	2 cut(s)	243, 517
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	5 cut(s)	243, 517, 728, 747, 769
SmoI	CTYRAG	5 cut(s)	243, 517, 728, 747, 769
Sse9I	AATT	4 cut(s)	94, 103, 285, 538
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	5 cut(s)	118, 176, 337, 755, 757
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	647
TaqI	TCGA	6 cut(s)	163, 244, 361, 518, 573, 678
TasI	AATT	4 cut(s)	94, 103, 285, 538
TauI	GCSGC	2 cut(s)	121, 178
TfiI	GAWTC	4 cut(s)	40, 232, 482, 575
Tru1I	TTAA	3 cut(s)	224, 297, 729
Tru9I	TTAA	3 cut(s)	224, 297, 729
TscAI	CASTG	2 cut(s)	255, 652
TseI	GCWGC	2 cut(s)	185, 690
TspDTI	ATGAA	3 cut(s)	41, 633, 777
TspGWI	ACGGA	2 cut(s)	147, 181
TspRI	CASTG	2 cut(s)	255, 652
Vha464I	CTTAAG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	94, 538
XhoI	CTCGAG	2 cut(s)	243, 517
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.