RING-type zinc-finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58030 AT3G58030 AT3G58030 AT3G58030 |
| fragaria_vesca | FvH4_6g22060 |
| malus_domestica | MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1 |
| prunus_persica | Prupe.7G079200_v2.0.a1 |
| pyrus_communis | pycom12g04880 |
| rosa_chinensis | RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391 |
| rosa_laevigata | RLG00000023579 |
| rosa_multiflora | Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350 |
| rosa_rugosa | Rorug03G0174800 Rorug03G0174900 |
| rosa_samantha | Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500 |
| rosa_wichuraiana | Rw3G020180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 536, 1232 |
| AarI | CACCTGC | 1 cut(s) | 472 |
| Acc16I | TGCGCA | 2 cut(s) | 254, 950 |
| Acc36I | ACCTGC | 2 cut(s) | 190, 472 |
| AccII | CGCG | 1 cut(s) | 757 |
| AciI | CCGC | 7 cut(s) | 118, 176, 337, 755, 757, 1033, 1181 |
| AclWI | GGATC | 1 cut(s) | 727 |
| AcoI | YGGCCR | 1 cut(s) | 173 |
| AcsI | RAATTY | 4 cut(s) | 94, 538, 960, 1234 |
| AcuI | CTGAAG | 2 cut(s) | 329, 1025 |
| AcyI | GRCGYC | 1 cut(s) | 826 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 43, 61, 136, 1365 |
| AflII | CTTAAG | 1 cut(s) | 728 |
| AgsI | TTSAA | 8 cut(s) | 579, 627, 665, 672, 1223, 1275, 1290, 1323 |
| AjnI | CCWGG | 1 cut(s) | 49 |
| AleI | CACNNNNGTG | 3 cut(s) | 563, 1259, 1353 |
| Alw21I | GWGCWC | 2 cut(s) | 250, 946 |
| Alw26I | GTCTC | 4 cut(s) | 5, 501, 855, 1197 |
| AlwI | GGATC | 1 cut(s) | 727 |
| Ama87I | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| AoxI | GGCC | 5 cut(s) | 52, 119, 173, 682, 743 |
| ApeKI | GCWGC | 3 cut(s) | 185, 690, 896 |
| ApoI | RAATTY | 4 cut(s) | 94, 538, 960, 1234 |
| AspLEI | GCGC | 3 cut(s) | 190, 255, 951 |
| AspS9I | GGNCC | 3 cut(s) | 47, 53, 682 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 591 |
| AsuII | TTCGAA | 2 cut(s) | 361, 1057 |
| AvaI | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| AvaII | GGWCC | 1 cut(s) | 47 |
| BaeGI | GKGCMC | 1 cut(s) | 1360 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 870, 903 |
| BbsI | GAAGAC | 1 cut(s) | 1378 |
| Bbv12I | GWGCWC | 2 cut(s) | 250, 946 |
| BbvI | GCAGC | 3 cut(s) | 197, 702, 908 |
| BccI | CCATC | 3 cut(s) | 165, 459, 1155 |
| BciT130I | CCWGG | 1 cut(s) | 51 |
| BcoDI | GTCTC | 4 cut(s) | 5, 501, 855, 1197 |
| BfaI | CTAG | 2 cut(s) | 315, 1011 |
| BfmI | CTRYAG | 3 cut(s) | 183, 465, 894 |
| BfrI | CTTAAG | 1 cut(s) | 728 |
| BfuAI | ACCTGC | 2 cut(s) | 190, 472 |
| BisI | GCNGC | 6 cut(s) | 119, 176, 186, 691, 897, 1181 |
| BlsI | GCNGC | 6 cut(s) | 120, 177, 187, 692, 898, 1182 |
| Bme1390I | CCNGG | 1 cut(s) | 51 |
| Bme18I | GGWCC | 1 cut(s) | 47 |
| BmeT110I | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| BmgT120I | GGNCC | 3 cut(s) | 47, 53, 682 |
| BmiI | GGNNCC | 2 cut(s) | 48, 55 |
| BmrFI | CCNGG | 1 cut(s) | 51 |
| BmrI | ACTGGG | 2 cut(s) | 488, 1184 |
| BmsI | GCATC | 4 cut(s) | 10, 677, 691, 702 |
| BmuI | ACTGGG | 2 cut(s) | 488, 1184 |
| BpiI | GAAGAC | 1 cut(s) | 1378 |
| Bpu14I | TTCGAA | 2 cut(s) | 361, 1057 |
| BpuEI | CTTGAG | 2 cut(s) | 732, 790 |
| Bsa29I | ATCGAT | 2 cut(s) | 573, 1269 |
| BsaHI | GRCGYC | 1 cut(s) | 826 |
| BsaJI | CCNNGG | 3 cut(s) | 755, 807, 829 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 43, 61, 136, 1365 |
| Bse118I | RCCGGY | 3 cut(s) | 61, 339, 1035 |
| Bse1I | ACTGG | 2 cut(s) | 494, 1190 |
| Bse3DI | GCAATG | 1 cut(s) | 30 |
| BseBI | CCWGG | 1 cut(s) | 51 |
| BseCI | ATCGAT | 2 cut(s) | 573, 1269 |
| BseDI | CCNNGG | 3 cut(s) | 755, 807, 829 |
| BseGI | GGATG | 5 cut(s) | 88, 298, 451, 766, 1147 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 43, 61, 136, 1365 |
| BseMI | GCAATG | 1 cut(s) | 30 |
| BseMII | CTCAG | 1 cut(s) | 866 |
| BseNI | ACTGG | 2 cut(s) | 494, 1190 |
| BseRI | GAGGAG | 3 cut(s) | 23, 802, 827 |
| BseSI | GKGCMC | 1 cut(s) | 1360 |
| BseXI | GCAGC | 3 cut(s) | 197, 702, 908 |
| Bsh1236I | CGCG | 1 cut(s) | 757 |
| BshFI | GGCC | 5 cut(s) | 54, 121, 175, 684, 745 |
| BshVI | ATCGAT | 2 cut(s) | 573, 1269 |
| BsiHKAI | GWGCWC | 2 cut(s) | 250, 946 |
| BsiHKCI | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| BsiSI | CCGG | 4 cut(s) | 62, 137, 340, 1036 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 43, 61, 136, 1365 |
| BsmAI | GTCTC | 4 cut(s) | 5, 501, 855, 1197 |
| BsnI | GGCC | 5 cut(s) | 54, 121, 175, 684, 745 |
| BsoBI | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| Bsp119I | TTCGAA | 2 cut(s) | 361, 1057 |
| Bsp1286I | GDGCHC | 3 cut(s) | 250, 946, 1360 |
| Bsp143I | GATC | 3 cut(s) | 675, 732, 1067 |
| BspACI | CCGC | 7 cut(s) | 118, 176, 337, 755, 757, 1033, 1181 |
| BspANI | GGCC | 5 cut(s) | 54, 121, 175, 684, 745 |
| BspCNI | CTCAG | 1 cut(s) | 865 |
| BspDI | ATCGAT | 2 cut(s) | 573, 1269 |
| BspFNI | CGCG | 1 cut(s) | 757 |
| BspLI | GGNNCC | 2 cut(s) | 48, 55 |
| BspMAI | CTGCAG | 3 cut(s) | 187, 469, 898 |
| BspMI | ACCTGC | 2 cut(s) | 190, 472 |
| BspPI | GGATC | 1 cut(s) | 727 |
| BspQI | GCTCTTC | 1 cut(s) | 645 |
| BspT104I | TTCGAA | 2 cut(s) | 361, 1057 |
| BspTI | CTTAAG | 1 cut(s) | 728 |
| BsrDI | GCAATG | 1 cut(s) | 30 |
| BsrFI | RCCGGY | 3 cut(s) | 61, 339, 1035 |
| BsrI | ACTGG | 2 cut(s) | 494, 1190 |
| BssAI | RCCGGY | 3 cut(s) | 61, 339, 1035 |
| BssECI | CCNNGG | 3 cut(s) | 755, 807, 829 |
| BssMI | GATC | 3 cut(s) | 675, 732, 1067 |
| BssNI | GRCGYC | 1 cut(s) | 826 |
| BssT1I | CCWWGG | 1 cut(s) | 829 |
| Bst2UI | CCWGG | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 2 cut(s) | 647, 1343 |
| Bst6I | CTCTTC | 1 cut(s) | 645 |
| BstACI | GRCGYC | 1 cut(s) | 826 |
| BstAFI | CTTAAG | 1 cut(s) | 728 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 133 |
| BstBI | TTCGAA | 2 cut(s) | 361, 1057 |
| BstC8I | GCNNGC | 4 cut(s) | 63, 341, 999, 1037 |
| BstDEI | CTNAG | 2 cut(s) | 740, 852 |
| BstDSI | CCRYGG | 2 cut(s) | 755, 807 |
| BstF5I | GGATG | 5 cut(s) | 88, 298, 451, 766, 1147 |
| BstFNI | CGCG | 1 cut(s) | 757 |
| BstHHI | GCGC | 3 cut(s) | 190, 255, 951 |
| BstKTI | GATC | 3 cut(s) | 678, 735, 1070 |
| BstMAI | GTCTC | 4 cut(s) | 5, 501, 855, 1197 |
| BstMBI | GATC | 3 cut(s) | 675, 732, 1067 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 124, 133, 259, 690, 696, 834, 955 |
| BstNI | CCWGG | 1 cut(s) | 51 |
| BstSCI | CCNGG | 1 cut(s) | 49 |
| BstSFI | CTRYAG | 3 cut(s) | 183, 465, 894 |
| BstSLI | GKGCMC | 1 cut(s) | 1360 |
| BstUI | CGCG | 1 cut(s) | 757 |
| BstV1I | GCAGC | 3 cut(s) | 197, 702, 908 |
| BstV2I | GAAGAC | 1 cut(s) | 1378 |
| BstX2I | RGATCY | 1 cut(s) | 732 |
| BstYI | RGATCY | 1 cut(s) | 732 |
| Bsu15I | ATCGAT | 2 cut(s) | 573, 1269 |
| BsuRI | GGCC | 5 cut(s) | 54, 121, 175, 684, 745 |
| BsuTUI | ATCGAT | 2 cut(s) | 573, 1269 |
| BtgI | CCRYGG | 2 cut(s) | 755, 807 |
| BtgZI | GCGATG | 1 cut(s) | 714 |
| BtsCI | GGATG | 5 cut(s) | 88, 298, 451, 766, 1147 |
| BtsI | GCAGTG | 2 cut(s) | 248, 944 |
| BtsIMutI | CAGTG | 4 cut(s) | 248, 652, 944, 1348 |
| BveI | ACCTGC | 2 cut(s) | 190, 472 |
| Cac8I | GCNNGC | 4 cut(s) | 63, 341, 999, 1037 |
| CfoI | GCGC | 3 cut(s) | 190, 255, 951 |
| Cfr10I | RCCGGY | 3 cut(s) | 61, 339, 1035 |
| Cfr13I | GGNCC | 3 cut(s) | 47, 53, 682 |
| Cfr42I | CCGCGG | 1 cut(s) | 758 |
| ClaI | ATCGAT | 2 cut(s) | 573, 1269 |
| CseI | GACGC | 1 cut(s) | 834 |
| CviAII | CATG | 6 cut(s) | 76, 352, 640, 657, 1048, 1336 |
| DdeI | CTNAG | 2 cut(s) | 740, 852 |
| DpnI | GATC | 3 cut(s) | 677, 734, 1069 |
| DpnII | GATC | 3 cut(s) | 675, 732, 1067 |
| EaeI | YGGCCR | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 1 cut(s) | 645 |
| EarI | CTCTTC | 1 cut(s) | 645 |
| Eco130I | CCWWGG | 1 cut(s) | 829 |
| Eco147I | AGGCCT | 1 cut(s) | 745 |
| Eco47I | GGWCC | 1 cut(s) | 47 |
| Eco57I | CTGAAG | 2 cut(s) | 329, 1025 |
| Eco88I | CYCGRG | 5 cut(s) | 56, 243, 517, 939, 1213 |
| EcoO109I | RGGNCCY | 1 cut(s) | 47 |
| EcoRII | CCWGG | 1 cut(s) | 49 |
| EcoT14I | CCWWGG | 1 cut(s) | 829 |
| ErhI | CCWWGG | 1 cut(s) | 829 |
| FaeI | CATG | 6 cut(s) | 79, 355, 643, 660, 1051, 1339 |
| FatI | CATG | 6 cut(s) | 75, 351, 639, 656, 1047, 1335 |
| FauI | CCCGC | 1 cut(s) | 750 |
| Fnu4HI | GCNGC | 6 cut(s) | 119, 176, 186, 691, 897, 1181 |
| FokI | GGATG | 5 cut(s) | 95, 305, 438, 773, 1134 |
| Fsp4HI | GCNGC | 6 cut(s) | 119, 176, 186, 691, 897, 1181 |
| FspBI | CTAG | 2 cut(s) | 315, 1011 |
| FspI | TGCGCA | 2 cut(s) | 254, 950 |
| GlaI | GCGC | 3 cut(s) | 189, 254, 950 |
| GluI | GCNGC | 6 cut(s) | 119, 176, 186, 691, 897, 1181 |
| HaeIII | GGCC | 5 cut(s) | 54, 121, 175, 684, 745 |
| HapII | CCGG | 4 cut(s) | 62, 137, 340, 1036 |
| HgaI | GACGC | 1 cut(s) | 834 |
| HhaI | GCGC | 3 cut(s) | 190, 255, 951 |
| Hin1I | GRCGYC | 1 cut(s) | 826 |
| Hin1II | CATG | 6 cut(s) | 79, 355, 643, 660, 1051, 1339 |
| Hin6I | GCGC | 3 cut(s) | 188, 253, 949 |
| HinP1I | GCGC | 3 cut(s) | 188, 253, 949 |
| HindIII | AAGCTT | 3 cut(s) | 621, 766, 1317 |
| HpaII | CCGG | 4 cut(s) | 62, 137, 340, 1036 |
| HphI | GGTGA | 2 cut(s) | 17, 591 |
| Hpy166II | GTNNAC | 1 cut(s) | 1346 |
| Hpy188I | TCNGA | 9 cut(s) | 19, 82, 205, 237, 544, 637, 786, 1240, 1333 |
| Hpy188III | TCNNGA | 9 cut(s) | 243, 479, 517, 606, 854, 939, 1175, 1213, 1302 |
| Hpy8I | GTNNAC | 1 cut(s) | 1346 |
| Hpy99I | CGWCG | 2 cut(s) | 168, 828 |
| HpyAV | CCTTC | 2 cut(s) | 612, 1359 |
| HpyCH4III | ACNGT | 2 cut(s) | 647, 1343 |
| HpyCH4V | TGCA | 8 cut(s) | 23, 127, 185, 467, 690, 794, 896, 1103 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 124, 133, 259, 690, 696, 834, 955 |
| HpyF3I | CTNAG | 2 cut(s) | 740, 852 |
| Hsp92I | GRCGYC | 1 cut(s) | 826 |
| Hsp92II | CATG | 6 cut(s) | 79, 355, 643, 660, 1051, 1339 |
| HspAI | GCGC | 3 cut(s) | 188, 253, 949 |
| KroI | GCCGGC | 3 cut(s) | 61, 339, 1035 |
| KroNI | GCCGGC | 3 cut(s) | 63, 341, 1037 |
| KspI | CCGCGG | 1 cut(s) | 758 |
| Kzo9I | GATC | 3 cut(s) | 675, 732, 1067 |
| LguI | GCTCTTC | 1 cut(s) | 645 |
| Lsp1109I | GCAGC | 3 cut(s) | 197, 702, 908 |
| LweI | GCATC | 4 cut(s) | 10, 677, 691, 702 |
| MaeI | CTAG | 2 cut(s) | 315, 1011 |
| MalI | GATC | 3 cut(s) | 677, 734, 1069 |
| MboI | GATC | 3 cut(s) | 675, 732, 1067 |
| MflI | RGATCY | 1 cut(s) | 732 |
| MhlI | GDGCHC | 3 cut(s) | 250, 946, 1360 |
| MluCI | AATT | 7 cut(s) | 94, 103, 285, 538, 960, 981, 1234 |
| MlyI | GAGTC | 5 cut(s) | 503, 556, 713, 1199, 1252 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| MroNI | GCCGGC | 3 cut(s) | 61, 339, 1035 |
| MseI | TTAA | 5 cut(s) | 224, 297, 729, 920, 992 |
| MslI | CAYNNNNRTG | 3 cut(s) | 563, 1259, 1353 |
| MspA1I | CMGCKG | 5 cut(s) | 118, 563, 757, 899, 1259 |
| MspCI | CTTAAG | 1 cut(s) | 728 |
| MspI | CCGG | 4 cut(s) | 62, 137, 340, 1036 |
| MspR9I | CCNGG | 1 cut(s) | 51 |
| MvaI | CCWGG | 1 cut(s) | 51 |
| MvnI | CGCG | 1 cut(s) | 757 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 124, 133, 259, 690, 696, 834, 955 |
| NaeI | GCCGGC | 3 cut(s) | 63, 341, 1037 |
| NdeII | GATC | 3 cut(s) | 675, 732, 1067 |
| NgoMIV | GCCGGC | 3 cut(s) | 61, 339, 1035 |
| NlaIII | CATG | 6 cut(s) | 79, 355, 643, 660, 1051, 1339 |
| NlaIV | GGNNCC | 2 cut(s) | 48, 55 |
| NsbI | TGCGCA | 2 cut(s) | 254, 950 |
| NspV | TTCGAA | 2 cut(s) | 361, 1057 |
| OliI | CACNNNNGTG | 3 cut(s) | 563, 1259, 1353 |
| PaeR7I | CTCGAG | 4 cut(s) | 243, 517, 939, 1213 |
| PaqCI | CACCTGC | 1 cut(s) | 472 |
| PceI | AGGCCT | 1 cut(s) | 745 |
| PciSI | GCTCTTC | 1 cut(s) | 645 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1063 |
| PdiI | GCCGGC | 3 cut(s) | 63, 341, 1037 |
| PfeI | GAWTC | 7 cut(s) | 40, 232, 482, 575, 820, 928, 1271 |
| PkrI | GCNGC | 6 cut(s) | 120, 177, 187, 692, 898, 1182 |
| PleI | GAGTC | 5 cut(s) | 503, 555, 713, 1199, 1251 |
| PpsI | GAGTC | 5 cut(s) | 503, 555, 713, 1199, 1251 |
| PpuMI | RGGWCCY | 1 cut(s) | 47 |
| PsiI | TTATAA | 2 cut(s) | 536, 1232 |
| Psp5II | RGGWCCY | 1 cut(s) | 47 |
| Psp6I | CCWGG | 1 cut(s) | 49 |
| PspGI | CCWGG | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 2 cut(s) | 48, 55 |
| PspPI | GGNCC | 3 cut(s) | 47, 53, 682 |
| PspPPI | RGGWCCY | 1 cut(s) | 47 |
| PstI | CTGCAG | 3 cut(s) | 187, 469, 898 |
| PsuI | RGATCY | 1 cut(s) | 732 |
| PvuII | CAGCTG | 3 cut(s) | 563, 899, 1259 |
| RseI | CAYNNNNRTG | 3 cut(s) | 563, 1259, 1353 |
| SacII | CCGCGG | 1 cut(s) | 758 |
| SapI | GCTCTTC | 1 cut(s) | 645 |
| SaqAI | TTAA | 5 cut(s) | 224, 297, 729, 920, 992 |
| SatI | GCNGC | 6 cut(s) | 119, 176, 186, 691, 897, 1181 |
| Sau3AI | GATC | 3 cut(s) | 675, 732, 1067 |
| Sau96I | GGNCC | 3 cut(s) | 47, 53, 682 |
| SchI | GAGTC | 5 cut(s) | 503, 556, 713, 1199, 1252 |
| ScrFI | CCNGG | 1 cut(s) | 51 |
| SduI | GDGCHC | 3 cut(s) | 250, 946, 1360 |
| SfaNI | GCATC | 4 cut(s) | 10, 677, 691, 702 |
| SfcI | CTRYAG | 3 cut(s) | 183, 465, 894 |
| Sfr274I | CTCGAG | 4 cut(s) | 243, 517, 939, 1213 |
| Sfr303I | CCGCGG | 1 cut(s) | 758 |
| SfuI | TTCGAA | 2 cut(s) | 361, 1057 |
| SgrBI | CCGCGG | 1 cut(s) | 758 |
| SinI | GGWCC | 1 cut(s) | 47 |
| SlaI | CTCGAG | 4 cut(s) | 243, 517, 939, 1213 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 563, 1259, 1353 |
| SmlI | CTYRAG | 7 cut(s) | 243, 517, 728, 747, 769, 939, 1213 |
| SmoI | CTYRAG | 7 cut(s) | 243, 517, 728, 747, 769, 939, 1213 |
| Sse9I | AATT | 7 cut(s) | 94, 103, 285, 538, 960, 981, 1234 |
| SseBI | AGGCCT | 1 cut(s) | 745 |
| SsiI | CCGC | 7 cut(s) | 118, 176, 337, 755, 757, 1033, 1181 |
| SspMI | CTAG | 2 cut(s) | 315, 1011 |
| StuI | AGGCCT | 1 cut(s) | 745 |
| StyD4I | CCNGG | 1 cut(s) | 49 |
| StyI | CCWWGG | 1 cut(s) | 829 |
| TaaI | ACNGT | 2 cut(s) | 647, 1343 |
| TasI | AATT | 7 cut(s) | 94, 103, 285, 538, 960, 981, 1234 |
| TauI | GCSGC | 3 cut(s) | 121, 178, 1183 |
| TfiI | GAWTC | 7 cut(s) | 40, 232, 482, 575, 820, 928, 1271 |
| Tru1I | TTAA | 5 cut(s) | 224, 297, 729, 920, 992 |
| Tru9I | TTAA | 5 cut(s) | 224, 297, 729, 920, 992 |
| TscAI | CASTG | 4 cut(s) | 255, 652, 951, 1348 |
| TseI | GCWGC | 3 cut(s) | 185, 690, 896 |
| TspDTI | ATGAA | 5 cut(s) | 41, 633, 777, 1284, 1329 |
| TspGWI | ACGGA | 2 cut(s) | 147, 181 |
| TspRI | CASTG | 4 cut(s) | 255, 652, 951, 1348 |
| Vha464I | CTTAAG | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 1 cut(s) | 47 |
| XapI | RAATTY | 4 cut(s) | 94, 538, 960, 1234 |
| XhoI | CTCGAG | 4 cut(s) | 243, 517, 939, 1213 |
| XspI | CTAG | 2 cut(s) | 315, 1011 |