Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004381

Physical Location & Seq

Genomic Coordinates Forward (+)

14820450 .. 14821229

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0174900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTTCTCAGGAATGCCAGCTTCACTTTGTCTTGTTTCCTTTTATGGCCCAAGGCCACATGATTCCAATGGTAGACATTGCTAGAATGCTTGCACAACACGGGGTGGCTATCACCATAGTCACCACACCACTTAATGCAGCTCGTTTCGAAACAGTTCTTACTCGCGCCAAAGAATCGGGGCACCAAATCCGGTTGATCCAGCTGAAATTTCCATCTGAAGGAGCTGGGTTGCCTCATGGCTGTGAGAACTTGGACATGATACCTTCCAACTTGGCCTCAAATTTCTTCAATGCAACCAAAAGGCTACAAGAGCCGGTAGAGAAACTGTTTGAAGAGTTGACCCCCAAGCCAAGTTGTATCATCTCAGACATGTGCTTGCCATGGACAATTAACATCTCTGGCATGTTTAACATTCCACGGATATCTTTCAGTGGAACGTGTTGCTTTTTCCTCTTATGTTTAAGCAATGTCGGCATAACTAAGGTTCTTGATGATATAACCTCTGAGGAGGAGTACTTTGTCCTGCCTGACTTGCCAGATCGCATTGAGGTGACCAAGGCTCAGCTGCCGGCAACCCATGCATCAAACATGGAAGATTTTAATGAAGCTTTGCTTGCAGCTGAGATGGCCTCATATGGGATAATTATGAATAGCTTTGAAGAGTTGGAGCCAGCATATGTTAAAGAATACAAGAAGGTAAAGAAAGATAAAGTATGGTGTGTTGGCCCTGCATCATTATGCAACAAAGATGACTTGGATAAGGCACAAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0030163 GO:0031984 GO:0032446 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

259

Amino Acids

28.98

Weight (kDa)

5.31

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	10 - 244	4.8e-11	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58030 AT3G58030 AT3G58030 AT3G58030
fragaria_vesca	FvH4_6g22060
malus_domestica	MD02G1306100.v1.1 MD12G1055900.v1.1 MD14G1055900.v1.1 MD14G1056100.v1.1
prunus_persica	Prupe.7G079200_v2.0.a1
pyrus_communis	pycom12g04880
rosa_chinensis	RchiOBHm_Chr3g0479381 RchiOBHm_Chr3g0479391
rosa_laevigata	RLG00000023579
rosa_multiflora	Rmu_co8192992.1_g000001 Rmu_sc0000107.1_g000001 Rmu_sc0006208.1_g000003 Rmu_sc0006208.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402310 Rroxscaffold_6G00402330 Rroxscaffold_6G00402350
rosa_rugosa	Rorug03G0174800 Rorug03G0174900
rosa_samantha	Rh3AG226000 Rh3AG226100 Rh3BG258700 Rh3BG258800 Rh3CG254800 Rh3CG255000 Rh3DG250300 Rh3DG250500
rosa_wichuraiana	Rw3G020180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	209, 283
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	221, 639
AflIII	ACRYGT	2 cut(s)	372, 440
AgsI	TTSAA	3 cut(s)	292, 335, 662
AluBI	AGCT	8 cut(s)	22, 143, 205, 227, 568, 611, 623, 657
AluI	AGCT	8 cut(s)	22, 143, 205, 227, 568, 611, 623, 657
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	5 cut(s)	48, 55, 276, 630, 727
ApeKI	GCWGC	3 cut(s)	140, 568, 620
ApoI	RAATTY	2 cut(s)	209, 283
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	49, 728
AsuHPI	GGTGA	3 cut(s)	106, 115, 565
AsuII	TTCGAA	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	152, 555, 632
BccI	CCATC	2 cut(s)	223, 622
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	141, 569, 621
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	142, 570, 622
BmcAI	AGTACT	1 cut(s)	518
BmgT120I	GGNCC	2 cut(s)	49, 728
BmiI	GGNNCC	2 cut(s)	185, 672
BmsI	GCATC	2 cut(s)	593, 743
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	52, 383, 419, 558
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 639
Bse118I	RCCGGY	2 cut(s)	316, 571
Bse3DI	GCAATG	2 cut(s)	78, 475
BseDI	CCNNGG	4 cut(s)	52, 383, 419, 558
BseLI	CCNNNNNNNGG	2 cut(s)	221, 639
BseMI	GCAATG	2 cut(s)	78, 475
BseMII	CTCAG	5 cut(s)	23, 381, 498, 578, 615
BseRI	GAGGAG	2 cut(s)	524, 527
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	3 cut(s)	152, 555, 632
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	5 cut(s)	50, 57, 278, 632, 729
BshNI	GGYRCC	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	193, 317, 572
BslI	CCNNNNNNNGG	2 cut(s)	221, 639
BsmI	GAATGC	2 cut(s)	20, 93
BsnI	GGCC	5 cut(s)	50, 57, 278, 632, 729
Bsp119I	TTCGAA	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	198, 541
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	383
BspANI	GGCC	5 cut(s)	50, 57, 278, 632, 729
BspCNI	CTCAG	5 cut(s)	22, 380, 499, 577, 616
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	185, 672
BspPI	GGATC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	2 cut(s)	78, 475
BsrFI	RCCGGY	2 cut(s)	316, 571
BssAI	RCCGGY	2 cut(s)	316, 571
BssECI	CCNNGG	4 cut(s)	52, 383, 419, 558
BssMI	GATC	2 cut(s)	198, 541
BssT1I	CCWWGG	3 cut(s)	52, 383, 558
Bst4CI	ACNGT	2 cut(s)	157, 330
Bst6I	CTCTTC	2 cut(s)	330, 657
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	6 cut(s)	20, 93, 380, 573, 618, 675
BstDEI	CTNAG	6 cut(s)	9, 367, 483, 507, 564, 624
BstDSI	CCRYGG	2 cut(s)	383, 419
BstEII	GGTNACC	1 cut(s)	553
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	201, 544
BstMBI	GATC	2 cut(s)	198, 541
BstMWI	GCNNNNNNNGC	6 cut(s)	313, 474, 535, 581, 617, 629
BstNSI	RCATGY	2 cut(s)	376, 409
BstPI	GGTNACC	1 cut(s)	553
BstSLI	GKGCMC	1 cut(s)	186
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	152, 555, 632
BsuRI	GGCC	5 cut(s)	50, 57, 278, 632, 729
BtgI	CCRYGG	2 cut(s)	383, 419
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	6 cut(s)	20, 93, 380, 573, 618, 675
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	316, 571
Cfr13I	GGNCC	2 cut(s)	49, 728
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	8 cut(s)	61, 239, 259, 373, 384, 406, 581, 592
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	6 cut(s)	9, 367, 483, 507, 564, 624
DpnI	GATC	2 cut(s)	200, 543
DpnII	GATC	2 cut(s)	198, 541
DraIII	CACNNNGTG	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	330, 657
EarI	CTCTTC	2 cut(s)	330, 657
Eco130I	CCWWGG	3 cut(s)	52, 383, 558
Eco32I	GATATC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	426
EcoT14I	CCWWGG	3 cut(s)	52, 383, 558
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	3 cut(s)	52, 383, 558
FaeI	CATG	8 cut(s)	64, 242, 262, 376, 387, 409, 584, 595
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	8 cut(s)	60, 238, 258, 372, 383, 405, 580, 591
FauNDI	CATATG	2 cut(s)	637, 679
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	141, 569, 621
Fsp4HI	GCNGC	3 cut(s)	141, 569, 621
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	141, 569, 621
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	5 cut(s)	50, 57, 278, 632, 729
HapII	CCGG	3 cut(s)	193, 317, 572
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	8 cut(s)	64, 242, 262, 376, 387, 409, 584, 595
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	64, 176
HpaII	CCGG	3 cut(s)	193, 317, 572
HphI	GGTGA	3 cut(s)	106, 115, 565
Hpy166II	GTNNAC	2 cut(s)	76, 342
Hpy188I	TCNGA	3 cut(s)	220, 370, 508
Hpy188III	TCNNGA	2 cut(s)	11, 491
Hpy8I	GTNNAC	2 cut(s)	76, 342
HpyAV	CCTTC	3 cut(s)	215, 276, 691
HpyCH4III	ACNGT	2 cut(s)	157, 330
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	7 cut(s)	95, 140, 296, 584, 620, 734, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	313, 474, 535, 581, 617, 629
HpyF3I	CTNAG	6 cut(s)	9, 367, 483, 507, 564, 624
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	8 cut(s)	64, 242, 262, 376, 387, 409, 584, 595
HspAI	GCGC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	571
KroNI	GCCGGC	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	198, 541
LmnI	GCTCC	2 cut(s)	224, 670
Lsp1109I	GCAGC	3 cut(s)	152, 555, 632
LweI	GCATC	2 cut(s)	593, 743
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	121, 553
MalI	GATC	2 cut(s)	200, 543
MboI	GATC	2 cut(s)	198, 541
MboII	GAAGA	4 cut(s)	280, 347, 608, 674
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	4 cut(s)	209, 283, 390, 645
MmeI	TCCRAC	2 cut(s)	294, 648
MnlI	CCTC	9 cut(s)	246, 289, 464, 502, 505, 514, 544, 643, 768
Mph1103I	ATGCAT	1 cut(s)	586
MroNI	GCCGGC	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	6 cut(s)	135, 393, 411, 464, 603, 684
MslI	CAYNNNNRTG	3 cut(s)	243, 551, 739
MspA1I	CMGCKG	3 cut(s)	205, 568, 623
MspI	CCGG	3 cut(s)	193, 317, 572
Mva1269I	GAATGC	2 cut(s)	20, 93
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	6 cut(s)	313, 474, 535, 581, 617, 629
NaeI	GCCGGC	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	2 cut(s)	637, 679
NdeII	GATC	2 cut(s)	198, 541
NgoMIV	GCCGGC	1 cut(s)	571
NlaIII	CATG	8 cut(s)	64, 242, 262, 376, 387, 409, 584, 595
NlaIV	GGNNCC	2 cut(s)	185, 672
NmuCI	GTSAC	2 cut(s)	121, 553
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	2 cut(s)	376, 409
NspV	TTCGAA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	372
PctI	GAATGC	2 cut(s)	20, 93
PdiI	GCCGGC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	64, 176
PkrI	GCNGC	3 cut(s)	142, 570, 622
PscI	ACATGT	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	185, 672
PspPI	GGNCC	2 cut(s)	49, 728
PvuII	CAGCTG	3 cut(s)	205, 568, 623
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	3 cut(s)	243, 551, 739
SaqAI	TTAA	6 cut(s)	135, 393, 411, 464, 603, 684
SatI	GCNGC	3 cut(s)	141, 569, 621
Sau3AI	GATC	2 cut(s)	198, 541
Sau96I	GGNCC	2 cut(s)	49, 728
ScaI	AGTACT	1 cut(s)	518
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	593, 743
SfuI	TTCGAA	1 cut(s)	150
SmiMI	CAYNNNNRTG	3 cut(s)	243, 551, 739
Sse9I	AATT	4 cut(s)	209, 283, 390, 645
SspMI	CTAG	1 cut(s)	84
StyI	CCWWGG	3 cut(s)	52, 383, 558
TaaI	ACNGT	2 cut(s)	157, 330
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	209, 283, 390, 645
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	64, 176
Tru1I	TTAA	6 cut(s)	135, 393, 411, 464, 603, 684
Tru9I	TTAA	6 cut(s)	135, 393, 411, 464, 603, 684
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	121, 553
TseI	GCWGC	3 cut(s)	140, 568, 620
Tsp45I	GTSAC	2 cut(s)	121, 553
TspDTI	ATGAA	2 cut(s)	621, 665
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	209, 283
XceI	RCATGY	2 cut(s)	376, 409
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.