Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006361

Physical Location & Seq

Genomic Coordinates Reverse (-)

10510103 .. 10511400

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1116900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTTGCATTTTTCTCTGGGGCAGGCACTGAACATCTTTTAGATGCTGTGGTCTCTCGGGCTCAGTCTGCTGTCAAGCAGAACTCTGATGATAATGTGTCTTGTAGAACAACATTGACAAAAATCAGTAGCTCTTCCGTCCCTAATAGTTCTTCCCCGTATGGACGAATTATTATGTCTAATGATGTGCACGGGGAGAAATTTGGCCTTCCTAAAGCTCTTGTAAAGGCAGGGACGGAAGAAACTAGTTCCTTTCAGTCTGGGTGTAGAAGAGAGGATGCGGGAAACTGTTCACTGACTAACTCTATATATGGATCTCAAATTAGTTCTTGGGTTAAACAGGGTAATAGTGCAAATCATGAGAGCAGTGTTTCAACAGCATATTCTAAGAGGCCTGATATGATAGGAAAATCAAATCGCAAAAGGCTTAAGCCTGGAGAGAACCCTAGACCAAGGCCAAAAGATCGTCAGATGATCCAAGATCGTGTGAAGGAGTTGCGTGATATTTGTAGCATAGATGCACTGCTTGAACGCACCATCAAGCATATGCTGTTCTTGCAAGGTGTCACAAAGCATGCCGACGAGCTAAAACAAACGGGAGAGTCAAAGATGCAGATTATTGGCAAAAAAGATGGACTGGTTCTAAAAGACAACTTTGATGGAGGGGCAACATGGGCTTTTGACGTTGGGACACAATCAATGGTTTGCCCTATCATCGTTGAGGATCTCAATCCACCCCGTCAGATGCTTGTGGAGATGCTCTGTGAAGAACAGGGTTTCTTTTTAGAAATAGCTGATTTAATCAGAGGTATGGGTTTGACCATCCTGAAGGGGGTGATGGAAGCTCGGAATGATAAGATATGGGCGTGCTTTGCAGTAGAGGTAATATTGAAAACAAGAGCCTTTTTTTATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

306

Amino Acids

33.73

Weight (kDa)

8.61

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_LHW	PF23176	150 - 205	7.9e-26	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27230 AT2G27230
fragaria_vesca	FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430
malus_domestica	MD03G1116900.v1.1 MD03G1155700.v1.1 MD11G1173100.v1.1
prunus_persica	Prupe.6G144300_v2.0.a1
pyrus_communis	pycom03g10980 pycom11g14740
rosa_chinensis	RchiOBHm_Chr5g0048491
rosa_laevigata	RLG00000034527
rosa_multiflora	Rmu_sc0001173.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033350
rosa_rugosa	Rorug05G0238400 Rorug05G0238500
rosa_samantha	Rh5AG318800 Rh5BG328800 Rh5CG354800 Rh5DG339800
rosa_wichuraiana	Rw5G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	3 cut(s)	322, 469, 732
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	848
AfiI	CCNNNNNNNGG	1 cut(s)	832
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	375, 530, 892
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	5 cut(s)	132, 218, 586, 794, 845
AluI	AGCT	5 cut(s)	132, 218, 586, 794, 845
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	3 cut(s)	322, 469, 732
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	205, 392, 455
ApaLI	GTGCAC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	847
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	5 cut(s)	545, 626, 653, 830, 832
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 447
BfrI	CTTAAG	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	6 cut(s)	34, 268, 508, 600, 735, 747
BpmI	CTGGAG	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse1I	ACTGG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	283, 822
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	1 cut(s)	192
BshFI	GGCC	3 cut(s)	207, 394, 457
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	3 cut(s)	125, 247, 703
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	3 cut(s)	125, 247, 703
BsnI	GGCC	3 cut(s)	207, 394, 457
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	64, 192
Bsp143I	GATC	5 cut(s)	314, 463, 474, 481, 724
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	3 cut(s)	207, 394, 457
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	358
BspPI	GGATC	3 cut(s)	322, 469, 732
BspQI	GCTCTTC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	5 cut(s)	314, 463, 474, 481, 724
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	2 cut(s)	139, 265
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	25, 576, 868
BstDEI	CTNAG	2 cut(s)	63, 387
BstF5I	GGATG	2 cut(s)	283, 822
BstKTI	GATC	5 cut(s)	317, 466, 477, 484, 727
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	5 cut(s)	314, 463, 474, 481, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 556, 674, 872
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	314, 724
BstYI	RGATCY	2 cut(s)	314, 724
BsuRI	GGCC	3 cut(s)	207, 394, 457
BtsCI	GGATG	2 cut(s)	283, 822
BtsI	GCAGTG	2 cut(s)	373, 521
BtsIMutI	CAGTG	4 cut(s)	27, 293, 373, 521
Cac8I	GCNNGC	3 cut(s)	25, 576, 868
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	358
CviAII	CATG	3 cut(s)	359, 575, 672
DdeI	CTNAG	2 cut(s)	63, 387
DpnI	GATC	5 cut(s)	316, 465, 476, 483, 726
DpnII	GATC	5 cut(s)	314, 463, 474, 481, 724
Eam1104I	CTCTTC	2 cut(s)	139, 265
EarI	CTCTTC	2 cut(s)	139, 265
Eco130I	CCWWGG	1 cut(s)	452
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	3 cut(s)	362, 578, 675
FaqI	GGGAC	3 cut(s)	125, 247, 703
FatI	CATG	3 cut(s)	358, 574, 671
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	546
FokI	GGATG	2 cut(s)	290, 809
FriOI	GRGCYC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	246, 447
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	207, 394, 457
Hin1II	CATG	3 cut(s)	362, 578, 675
HinfI	GANTC	1 cut(s)	602
HphI	GGTGA	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	190, 293
Hpy188I	TCNGA	5 cut(s)	88, 471, 744, 806, 849
Hpy188III	TCNNGA	2 cut(s)	359, 826
Hpy8I	GTNNAC	2 cut(s)	190, 293
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	3 cut(s)	218, 484, 823
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	684
HpyCH4V	TGCA	7 cut(s)	8, 190, 353, 521, 559, 613, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 556, 674, 872
HpyF3I	CTNAG	2 cut(s)	63, 387
HpySE526I	ACGT	1 cut(s)	684
Hsp92II	CATG	3 cut(s)	362, 578, 675
Kzo9I	GATC	5 cut(s)	314, 463, 474, 481, 724
LguI	GCTCTTC	1 cut(s)	139
LweI	GCATC	6 cut(s)	34, 268, 508, 600, 735, 747
MaeI	CTAG	2 cut(s)	246, 447
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	316, 465, 476, 483, 726
MboI	GATC	5 cut(s)	314, 463, 474, 481, 724
MboII	GAAGA	5 cut(s)	126, 144, 251, 282, 779
MflI	RGATCY	2 cut(s)	314, 724
MhlI	GDGCHC	2 cut(s)	64, 192
MluCI	AATT	3 cut(s)	168, 200, 321
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	6 cut(s)	268, 384, 656, 715, 800, 874
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	3 cut(s)	336, 429, 800
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	68, 556, 674, 872
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	5 cut(s)	314, 463, 474, 481, 724
NlaIII	CATG	3 cut(s)	362, 578, 675
NmuCI	GTSAC	1 cut(s)	565
NspI	RCATGY	1 cut(s)	578
PaeI	GCATGC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	314, 724
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	336, 429, 800
Sau3AI	GATC	5 cut(s)	314, 463, 474, 481, 724
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	64, 192
SetI	ASST	9 cut(s)	134, 220, 565, 588, 687, 796, 811, 847, 885
SfaNI	GCATC	6 cut(s)	34, 268, 508, 600, 735, 747
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	245
SphI	GCATGC	1 cut(s)	578
Sse9I	AATT	3 cut(s)	168, 200, 321
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	1 cut(s)	281
SspI	AATATT	1 cut(s)	888
SspMI	CTAG	2 cut(s)	246, 447
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	687
TasI	AATT	3 cut(s)	168, 200, 321
Tru1I	TTAA	3 cut(s)	336, 429, 800
Tru9I	TTAA	3 cut(s)	336, 429, 800
TscAI	CASTG	4 cut(s)	34, 300, 373, 528
TseFI	GTSAC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	565
TspGWI	ACGGA	2 cut(s)	127, 251
TspRI	CASTG	4 cut(s)	34, 300, 373, 528
Vha464I	CTTAAG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	289
XspI	CTAG	2 cut(s)	246, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.