Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006361

Physical Location & Seq

Genomic Coordinates Reverse (-)

25185577 .. 25186270

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0238400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTAACCTCAACATCATCATCATCCTCACTCCCCCACCCAATTCTCCACTCTCCCCTCCACTCCAAAACCCTAACCCTCACCCCACCCTCTCTCAAATTCCAACCAAACCCAAAACCTCAGTTCCACCTCGGAACCTCAATCCTCATCTCCAAACGTTGCCCCAACATCGTTGCCATGAGTAAATCCCCGAAAGTTGAGGAGCAGAAGTTCAGCGCAGAGGGTCTGGTCACCGAGTCGCTCCCTAACGGTATGTTTCGAATCCGATTAGACAACGCGGACAACATCATAGGATACATTTCTGGGAAAATCCGAAAGAGTTTCATTAGGATATTGCCTGGGGACAGAGTCAAAGTTGAGGTCAGTCGCTATGATACTACTAGAGGTCGAATTGTTTATAGACTCCGTAACACTAGGGATTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

10.47

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-1a	PF01176	74 - 134	1.6e-21	Translation initiation factor 1A / IF-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27230 AT2G27230
fragaria_vesca	FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430
malus_domestica	MD03G1116900.v1.1 MD03G1155700.v1.1 MD11G1173100.v1.1
prunus_persica	Prupe.6G144300_v2.0.a1
pyrus_communis	pycom03g10980 pycom11g14740
rosa_chinensis	RchiOBHm_Chr5g0048491
rosa_laevigata	RLG00000034527
rosa_multiflora	Rmu_sc0001173.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033350
rosa_rugosa	Rorug05G0238400 Rorug05G0238500
rosa_samantha	Rh5AG318800 Rh5BG328800 Rh5CG354800 Rh5DG339800
rosa_wichuraiana	Rw5G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	73, 223
AsuII	TTCGAA	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	381, 414
BfuI	GTATCC	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	130, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	130, 338
BseGI	GGATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	259
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	136
BspT104I	TTCGAA	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	130, 338
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	179, 254, 290, 372, 399
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	1 cut(s)	177
FokI	GGATG	1 cut(s)	10
FspBI	CTAG	2 cut(s)	381, 414
GlaI	GCGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	236, 261, 348, 402, 419
HpaI	GTTAAC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	73, 223
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	134, 266, 314
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	216
KspAI	GTTAAC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	202, 246
LpnPI	CCDG	4 cut(s)	212, 288, 324, 351
MaeI	CTAG	2 cut(s)	381, 414
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	229, 407
MluCI	AATT	3 cut(s)	42, 98, 390
MlyI	GAGTC	3 cut(s)	245, 357, 396
MmeI	TCCRAC	1 cut(s)	127
MseI	TTAA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	278
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	261, 419
PflFI	GACNNNGTC	1 cut(s)	347
PleI	GAGTC	3 cut(s)	244, 356, 396
PpsI	GAGTC	3 cut(s)	244, 356, 396
Psp1406I	AACGTT	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	5
SchI	GAGTC	3 cut(s)	245, 357, 396
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	7 cut(s)	11, 121, 132, 140, 160, 363, 388
SfuI	TTCGAA	1 cut(s)	259
Sse9I	AATT	3 cut(s)	42, 98, 390
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	381, 414
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	259, 388
TasI	AATT	3 cut(s)	42, 98, 390
TfiI	GAWTC	2 cut(s)	261, 419
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	98
XspI	CTAG	2 cut(s)	381, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.