Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006361

Physical Location & Seq

Genomic Coordinates Reverse (-)

25201421 .. 25239731

Gene Structure 38311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGCAACTGGGTGGTGTTACTTTGTTTTTCTTATTCATCTTCAGTTTGCTTCCTTCACAGTATGGCGCTGAAGTATATAACATAACTCCTTCACACCCATTAGCAGAGGGACAAACTCTAGTCTCTCCTGGCCTAATATTTGAACTGGGCTTCTTCAATCCTAATAGTTCTGCCAATAAGTATGTGGGCTTGTGGCACAAAAGTATATATCCCCGTAAATATGTGTGGGTGGCTAACAGAGATAATCCTCTTGCGGCTAGAGACACCTTCGTTAGTTTGAGAATTGGCAGCAGCGGGAGTCTGGAGCTCGTAGATGGGAAACAGATTTCTGTCTGGTCCGCCAATATATCCAATTGTTCATCTGCAGTTCTCTTGGATAATGGAAACTTTGTTGTCAAAGATGATATGGGAGCTGATATATGGGAGAGTTTCAATAATCCTAGTGACTCACAACTGCCAAGCATGATGGGAAAACAGATTTTCTACACATCTTGGAGAAGTGATAATGATCCATCAACGGGGATATTCAAGGCCGGATATTCAGCAGAGTTTCCATCACAATCGTTCATTTGGATTAATGGATCTATTCCCTACTGGAGAAGTGGGCCTTGGGATCAATCAAAGTATATTGGTGTGACACCGGGAACAAGGTATAACTCTTACAGTTTTAACAAAATTCCAGGTGACAAAGTTTTTACATATATAGACATATCTTCAGAAGGAGTAATGAGGAAAATGCTTTCAGAAAGTGGGAAGAACTGGTATCTTGACTGGGAGTCATGGAAAAACCCATGCGATAATTATGGCGCCTGTGGACCTTTTGGGGTTTGCAATGCTTCTGACTCTCCAATCTGCAAGTGTTTGAAAGGGTTTATACCCAAGTCAAATGAAGAATGGAGCAAAAGAAACTGGAGCCGAGGTTGTGTGAGACGAACGAATTTGTCTTGTGAGACTAACACAAATGATTCAGTCTCATCAAAAGGAAAAGATGGGTTTTTGAAGTTGGAAAGAGTGAAAGTACCCGATTTTCATGAATATCTGAATTCTGTGTCTCTAGACAAGCTCGAGGACTGCAAGATACAGTGCCTGAGTAATTGTTCTTGCCTGGCTTATGCATATGTTGATACCATAGGGTGTTTGGTCTGGTCCAAAGACCTTATTGATATGCAGAAGTTTCCATCTCTTGGAGAAGATCTTCACGTCCGCCTAGCACCCTCAGAACTAGATGAAGAAAAGCCGATAAAGTTAATTGCTAGCCTTACAGCTATTGGGTTTATGAGTATCTTGATTGCAATAGTCTTCAGTTTGCACAGGTGGCGTGCCAACCAAAAGCGACACGTTGGATTAACAGCACGACGCTTGGAAACAACTAGTATGATTAAGATTCATAGAGATGGTCTTCGAGAATATATAGGACAACATGATTTCTCGGAGCTAAAGATATATGATTTTGATAGCATATCGATCGCCACAGACAACTTCAGCATAACAAACAAACTCGGTCAAGGAGGCTTTGGCCCAGTTTATAAGGGGATGCTACCGGAAGGGAAGGAAATAGCAGTAAAAAGACTATCTAGTAGCTCAAGACAAGGAGTTGAAGAGTTCAAGAATGAGATGCTGTTGATCTCCAATCTTCAACACAAAAACCTTGTTAGGATGATGGGTTGCTGTGTTAAAGAGAATGAGAAGTTACTGATCTACGAGTTCATGCCAAACAAAAGCTTGGATACTTTTCTATATGATCCGACAAAGAGAGCAGTGCTGGATTGGGCTAAAAGCTTTAACATTATTCAGGGTGTTGCTAAGGGGCTTCTTTATCTTCATCATGATTCCTATGTGAAGGTGATTCATAGAGATCTTAAAGTCGGTAACATCCTGTTGGATGAGAAAATGAATCCAAAAATCTCAGATTTCGGATTGGCACGCATTATTGAAGGAACGCAGAGTCTAGAAAATACTCAGAAGGTTGTGGGAACATGTGGCTATATGTCTCCGGAGTATGCTATCGGTGGGATATTTTCCGAGAAATCTGATGTCTATAGCTTCGGGGTCTTGGTATTGGAGATTATTAGCAGCAAGAAAAATAGCAGCTTCTATTTATATGACCAACAACTTGGCTTCCTTGCCTATGCTTGGAACTTGTGGAATGAAGGCAGGGCATTGGAGTTAGTAGATGAAGTATTGGGTGATTCATACTCCTCATCAGAAGACAATGCTGCGGATAGACCAACCATGGCGGATGTAGCTTCAATGCTAAACAGCGAGAAAGATGGTCCACATCCAAAGAGGCCTGTGTTCACCATCCAAAACTCAGTTTGTCATCCTGGACCATCCTATAAAAATACTAATTCCTCCAAAAATGAAGCTAGCGTTACAACTATAGAAGGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

797

Amino Acids

89.43

Weight (kDa)

6.43

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	74 - 156	4.3e-19	D-mannose binding lectin
S_locus_glycop	PF00954	199 - 295	5.2e-20	S-locus glycoprotein domain
PAN_2	PF08276	326 - 389	1.1e-18	PAN-like domain
Pkinase	PF00069	495 - 694	3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	496 - 696	5.5e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27230 AT2G27230
fragaria_vesca	FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430
malus_domestica	MD03G1116900.v1.1 MD03G1155700.v1.1 MD11G1173100.v1.1
prunus_persica	Prupe.6G144300_v2.0.a1
pyrus_communis	pycom03g10980 pycom11g14740
rosa_chinensis	RchiOBHm_Chr5g0048491
rosa_laevigata	RLG00000034527
rosa_multiflora	Rmu_sc0001173.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033350
rosa_rugosa	Rorug05G0238400 Rorug05G0238500
rosa_samantha	Rh5AG318800 Rh5BG328800 Rh5CG354800 Rh5DG339800
rosa_wichuraiana	Rw5G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1527
AccB1I	GGYRCC	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccIII	TCCGGA	1 cut(s)	1993
AciI	CCGC	6 cut(s)	254, 294, 339, 1204, 2219, 2237
AclWI	GGATC	4 cut(s)	503, 589, 621, 1736
AcsI	RAATTY	3 cut(s)	675, 937, 1042
AcuI	CTGAAG	5 cut(s)	25, 90, 699, 1285, 1465
AcyI	GRCGYC	1 cut(s)	807
AfaI	GTAC	1 cut(s)	1020
AfiI	CCNNNNNNNGG	3 cut(s)	518, 1184, 2133
AflIII	ACRYGT	2 cut(s)	1336, 1976
AhdI	GACNNNNNGTC	1 cut(s)	775
AhlI	ACTAGT	1 cut(s)	1370
AjiI	CACGTC	1 cut(s)	1201
AjnI	CCWGG	4 cut(s)	127, 679, 1104, 2323
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	7 cut(s)	127, 255, 922, 944, 976, 1056, 1995
AlwI	GGATC	4 cut(s)	503, 589, 621, 1736
AlwNI	CAGNNNCTG	1 cut(s)	1087
Ama87I	CYCGRG	1 cut(s)	1064
Aor13HI	TCCGGA	1 cut(s)	1993
AoxI	GGCC	5 cut(s)	130, 531, 605, 1516, 2288
ApeKI	GCWGC	5 cut(s)	288, 291, 2073, 2088, 2216
ApoI	RAATTY	3 cut(s)	675, 937, 1042
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	1194
AspLEI	GCGC	2 cut(s)	68, 809
AspS9I	GGNCC	7 cut(s)	336, 605, 815, 1146, 1517, 2273, 2327
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	4 cut(s)	695, 1855, 2198, 2290
AsuNHI	GCTAGC	2 cut(s)	1253, 2366
AvaI	CYCGRG	1 cut(s)	1064
AvaII	GGWCC	5 cut(s)	336, 815, 1146, 2273, 2327
BanI	GGYRCC	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	3 cut(s)	1291, 1391, 2214
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	5 cut(s)	300, 303, 2085, 2100, 2203
BcgI	CGANNNNNNTGC	2 cut(s)	1447, 1481
BciT130I	CCWGG	4 cut(s)	129, 681, 1106, 2325
BciVI	GTATCC	1 cut(s)	1720
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	7 cut(s)	127, 255, 922, 944, 976, 1056, 1995
BcuI	ACTAGT	1 cut(s)	1370
BfmI	CTRYAG	3 cut(s)	363, 2038, 2379
BfoI	RGCGCY	2 cut(s)	69, 810
BfuI	GTATCC	1 cut(s)	1720
BglII	AGATCT	2 cut(s)	1192, 1855
BisI	GCNGC	6 cut(s)	255, 289, 292, 2074, 2089, 2217
BlsI	GCNGC	6 cut(s)	256, 290, 293, 2075, 2090, 2218
Bme1390I	CCNGG	5 cut(s)	129, 642, 681, 1106, 2325
Bme18I	GGWCC	5 cut(s)	336, 815, 1146, 2273, 2327
BmeRI	GACNNNNNGTC	1 cut(s)	775
BmeT110I	CYCGRG	1 cut(s)	1064
BmgBI	CACGTC	1 cut(s)	1201
BmgT120I	GGNCC	7 cut(s)	336, 605, 815, 1146, 1517, 2273, 2327
BmiI	GGNNCC	2 cut(s)	808, 914
BmrFI	CCNGG	5 cut(s)	129, 642, 681, 1106, 2325
BmrI	ACTGGG	4 cut(s)	17, 155, 781, 1514
BmsI	GCATC	2 cut(s)	1524, 1605
BmtI	GCTAGC	2 cut(s)	1257, 2370
BmuI	ACTGGG	4 cut(s)	17, 155, 781, 1514
BpiI	GAAGAC	3 cut(s)	1291, 1391, 2214
BpmI	CTGGAG	3 cut(s)	323, 616, 931
Bpu10I	CCTNAGC	1 cut(s)	1803
BpuEI	CTTGAG	1 cut(s)	1567
BpuMI	CCSGG	1 cut(s)	642
Bsa29I	ATCGAT	1 cut(s)	1463
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	807
BsaJI	CCNNGG	3 cut(s)	608, 916, 2232
BsaWI	WCCGGW	2 cut(s)	1540, 1993
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 1184, 2133
Bse1I	ACTGG	7 cut(s)	12, 150, 599, 764, 776, 914, 1520
Bse3DI	GCAATG	1 cut(s)	838
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	1993
BseBI	CCWGG	4 cut(s)	129, 681, 1106, 2325
BseCI	ATCGAT	1 cut(s)	1463
BseDI	CCNNGG	3 cut(s)	608, 916, 2232
BseGI	GGATG	9 cut(s)	1539, 1662, 1872, 1888, 2245, 2278, 2301, 2320, 2330
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	518, 1184, 2133
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	5 cut(s)	1079, 1230, 1920, 1973, 2325
BseNI	ACTGG	7 cut(s)	12, 150, 599, 764, 776, 914, 1520
BseRI	GAGGAG	1 cut(s)	2188
BseXI	GCAGC	5 cut(s)	300, 303, 2085, 2100, 2203
Bsh1285I	CGRYCG	1 cut(s)	1467
BshFI	GGCC	5 cut(s)	132, 533, 607, 1518, 2290
BshNI	GGYRCC	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	1463
BsiEI	CGRYCG	1 cut(s)	1467
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	1064
BsiSI	CCGG	4 cut(s)	534, 641, 1541, 1994
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	518, 1184, 2133
BsmAI	GTCTC	7 cut(s)	127, 255, 922, 944, 976, 1056, 1995
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	5 cut(s)	132, 533, 607, 1518, 2290
BsoBI	CYCGRG	1 cut(s)	1064
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	1993
Bsp143I	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
Bsp19I	CCATGG	1 cut(s)	2232
BspACI	CCGC	6 cut(s)	254, 294, 339, 1204, 2219, 2237
BspANI	GGCC	5 cut(s)	132, 533, 607, 1518, 2290
BspCNI	CTCAG	5 cut(s)	1080, 1229, 1919, 1972, 2324
BspDI	ATCGAT	1 cut(s)	1463
BspEI	TCCGGA	1 cut(s)	1993
BspHI	TCATGA	2 cut(s)	1030, 1825
BspLI	GGNNCC	2 cut(s)	808, 914
BspMAI	CTGCAG	1 cut(s)	367
BspOI	GCTAGC	2 cut(s)	1257, 2370
BspPI	GGATC	4 cut(s)	503, 589, 621, 1736
BspT107I	GGYRCC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	7 cut(s)	12, 150, 599, 764, 776, 914, 1520
BssECI	CCNNGG	3 cut(s)	608, 916, 2232
BssMI	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
BssNI	GRCGYC	1 cut(s)	807
BssT1I	CCWWGG	2 cut(s)	608, 2232
Bst2UI	CCWGG	4 cut(s)	129, 681, 1106, 2325
Bst4CI	ACNGT	3 cut(s)	60, 665, 1083
Bst6I	CTCTTC	1 cut(s)	1593
BstACI	GRCGYC	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	1255, 1320, 1924, 2368
BstDEI	CTNAG	6 cut(s)	1088, 1216, 1803, 1906, 1959, 2311
BstDSI	CCRYGG	1 cut(s)	2232
BstF5I	GGATG	9 cut(s)	1539, 1662, 1872, 1888, 2245, 2278, 2301, 2320, 2330
BstH2I	RGCGCY	2 cut(s)	69, 810
BstHHI	GCGC	2 cut(s)	68, 809
BstKTI	GATC	9 cut(s)	511, 584, 616, 1195, 1467, 1626, 1698, 1744, 1858
BstMAI	GTCTC	7 cut(s)	127, 255, 922, 944, 976, 1056, 1995
BstMBI	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
BstMCI	CGRYCG	1 cut(s)	1467
BstMWI	GCNNNNNNNGC	2 cut(s)	1315, 2243
BstNI	CCWGG	4 cut(s)	129, 681, 1106, 2325
BstNSI	RCATGY	1 cut(s)	1980
BstSCI	CCNGG	5 cut(s)	127, 640, 679, 1104, 2323
BstSFI	CTRYAG	3 cut(s)	363, 2038, 2379
BstV1I	GCAGC	5 cut(s)	300, 303, 2085, 2100, 2203
BstV2I	GAAGAC	3 cut(s)	1291, 1391, 2214
BstX2I	RGATCY	3 cut(s)	581, 1192, 1855
BstXI	CCANNNNNNTGG	1 cut(s)	2114
BstYI	RGATCY	3 cut(s)	581, 1192, 1855
Bsu15I	ATCGAT	1 cut(s)	1463
BsuI	GTATCC	1 cut(s)	1720
BsuRI	GGCC	5 cut(s)	132, 533, 607, 1518, 2290
BsuTUI	ATCGAT	1 cut(s)	1463
BtgI	CCRYGG	1 cut(s)	2232
BtrI	CACGTC	1 cut(s)	1201
BtsCI	GGATG	9 cut(s)	1539, 1662, 1872, 1888, 2245, 2278, 2301, 2320, 2330
BtsI	GCAGTG	1 cut(s)	1764
BtsIMutI	CAGTG	2 cut(s)	1088, 1764
Cac8I	GCNNGC	4 cut(s)	1255, 1320, 1924, 2368
CaiI	CAGNNNCTG	1 cut(s)	1087
CciI	TCATGA	2 cut(s)	1030, 1825
CfoI	GCGC	2 cut(s)	68, 809
Cfr13I	GGNCC	7 cut(s)	336, 605, 815, 1146, 1517, 2273, 2327
ClaI	ATCGAT	1 cut(s)	1463
CseI	GACGC	1 cut(s)	1365
Csp6I	GTAC	1 cut(s)	1019
CviAII	CATG	9 cut(s)	463, 780, 792, 1031, 1421, 1708, 1826, 1977, 2233
CviQI	GTAC	1 cut(s)	1019
DdeI	CTNAG	6 cut(s)	1088, 1216, 1803, 1906, 1959, 2311
DinI	GGCGCC	1 cut(s)	808
DpnI	GATC	9 cut(s)	510, 583, 615, 1194, 1466, 1625, 1697, 1743, 1857
DpnII	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
DriI	GACNNNNNGTC	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	1593
Eam1105I	GACNNNNNGTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	1593
EciI	GGCGGA	3 cut(s)	328, 1193, 2252
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	608, 2232
Eco147I	AGGCCT	1 cut(s)	2290
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	5 cut(s)	336, 815, 1146, 2273, 2327
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	5 cut(s)	25, 90, 699, 1285, 1465
Eco88I	CYCGRG	1 cut(s)	1064
EcoICRI	GAGCTC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	1042
EcoRII	CCWGG	4 cut(s)	127, 679, 1104, 2323
EcoT14I	CCWWGG	2 cut(s)	608, 2232
EcoT22I	ATGCAT	1 cut(s)	1117
EcoT38I	GRGCYC	1 cut(s)	309
EgeI	GGCGCC	1 cut(s)	808
EheI	GGCGCC	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	608, 2232
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	9 cut(s)	466, 783, 795, 1034, 1424, 1711, 1829, 1980, 2236
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	9 cut(s)	462, 779, 791, 1030, 1420, 1707, 1825, 1976, 2232
FauI	CCCGC	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	1117
Fnu4HI	GCNGC	6 cut(s)	255, 289, 292, 2074, 2089, 2217
FokI	GGATG	9 cut(s)	1546, 1669, 1859, 1895, 2252, 2265, 2288, 2307, 2317
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	255, 289, 292, 2074, 2089, 2217
GlaI	GCGC	2 cut(s)	67, 808
GluI	GCNGC	6 cut(s)	255, 289, 292, 2074, 2089, 2217
GsuI	CTGGAG	3 cut(s)	323, 616, 931
HaeII	RGCGCY	2 cut(s)	69, 810
HaeIII	GGCC	5 cut(s)	132, 533, 607, 1518, 2290
HapII	CCGG	4 cut(s)	534, 641, 1541, 1994
HgaI	GACGC	1 cut(s)	1365
HhaI	GCGC	2 cut(s)	68, 809
Hin1I	GRCGYC	1 cut(s)	807
Hin1II	CATG	9 cut(s)	466, 783, 795, 1034, 1424, 1711, 1829, 1980, 2236
Hin6I	GCGC	2 cut(s)	66, 807
HinP1I	GCGC	2 cut(s)	66, 807
HindIII	AAGCTT	2 cut(s)	1720, 1777
HpaII	CCGG	4 cut(s)	534, 641, 1541, 1994
HphI	GGTGA	4 cut(s)	695, 1855, 2198, 2290
Hpy166II	GTNNAC	3 cut(s)	815, 2276, 2298
Hpy8I	GTNNAC	3 cut(s)	815, 2276, 2298
Hpy99I	CGWCG	1 cut(s)	1359
HpyCH4III	ACNGT	3 cut(s)	60, 665, 1083
HpyCH4IV	ACGT	3 cut(s)	1200, 1338, 2389
HpyCH4V	TGCA	9 cut(s)	4, 365, 831, 855, 1074, 1115, 1168, 1292, 1309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1315, 2243
HpyF3I	CTNAG	6 cut(s)	1088, 1216, 1803, 1906, 1959, 2311
HpySE526I	ACGT	3 cut(s)	1200, 1338, 2389
Hsp92I	GRCGYC	1 cut(s)	807
Hsp92II	CATG	9 cut(s)	466, 783, 795, 1034, 1424, 1711, 1829, 1980, 2236
HspAI	GCGC	2 cut(s)	66, 807
KasI	GGCGCC	1 cut(s)	806
Kpn2I	TCCGGA	1 cut(s)	1993
Kzo9I	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
LmnI	GCTCC	5 cut(s)	304, 410, 897, 912, 1432
Lsp1109I	GCAGC	5 cut(s)	300, 303, 2085, 2100, 2203
LweI	GCATC	2 cut(s)	1524, 1605
MaeII	ACGT	3 cut(s)	1200, 1338, 2389
MaeIII	GTNAC	7 cut(s)	16, 443, 634, 683, 1689, 1868, 2371
MalI	GATC	9 cut(s)	510, 583, 615, 1194, 1466, 1625, 1697, 1743, 1857
MboI	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
MfeI	CAATTG	1 cut(s)	352
MflI	RGATCY	3 cut(s)	581, 1192, 1855
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	9 cut(s)	282, 352, 675, 799, 937, 1042, 1093, 1248, 2347
Mly113I	GGCGCC	1 cut(s)	807
MlyI	GAGTC	5 cut(s)	307, 440, 785, 836, 1954
MmeI	TCCRAC	4 cut(s)	984, 1321, 1769, 1860
Mph1103I	ATGCAT	1 cut(s)	1117
MroI	TCCGGA	1 cut(s)	1993
MroXI	GAANNNNTTC	1 cut(s)	1194
MseI	TTAA	8 cut(s)	576, 669, 1247, 1346, 1380, 1674, 1782, 1860
MslI	CAYNNNNRTG	1 cut(s)	1392
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	4 cut(s)	534, 641, 1541, 1994
MspR9I	CCNGG	5 cut(s)	129, 642, 681, 1106, 2325
MunI	CAATTG	1 cut(s)	352
MvaI	CCWGG	4 cut(s)	129, 681, 1106, 2325
MwoI	GCNNNNNNNGC	2 cut(s)	1315, 2243
NarI	GGCGCC	1 cut(s)	807
NciI	CCSGG	1 cut(s)	642
NcoI	CCATGG	1 cut(s)	2232
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
NheI	GCTAGC	2 cut(s)	1253, 2366
NlaIII	CATG	9 cut(s)	466, 783, 795, 1034, 1424, 1711, 1829, 1980, 2236
NlaIV	GGNNCC	2 cut(s)	808, 914
NmeAIII	GCCGAG	1 cut(s)	941
NmuCI	GTSAC	3 cut(s)	443, 634, 683
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	1 cut(s)	1980
PaeR7I	CTCGAG	1 cut(s)	1064
PagI	TCATGA	2 cut(s)	1030, 1825
PceI	AGGCCT	1 cut(s)	2290
PciI	ACATGT	1 cut(s)	1976
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	6 cut(s)	965, 1384, 1829, 1846, 1894, 2189
PflMI	CCANNNNNTGG	1 cut(s)	1184
PfoI	TCCNGGA	1 cut(s)	2323
PkrI	GCNGC	6 cut(s)	256, 290, 293, 2075, 2090, 2218
Ple19I	CGATCG	1 cut(s)	1467
PleI	GAGTC	5 cut(s)	306, 440, 784, 836, 1953
PluTI	GGCGCC	1 cut(s)	810
PpsI	GAGTC	5 cut(s)	306, 440, 784, 836, 1953
PscI	ACATGT	1 cut(s)	1976
PshBI	ATTAAT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	1527
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	4 cut(s)	127, 679, 1104, 2323
PspGI	CCWGG	4 cut(s)	127, 679, 1104, 2323
PspN4I	GGNNCC	2 cut(s)	808, 914
PspPI	GGNCC	7 cut(s)	336, 605, 815, 1146, 1517, 2273, 2327
PspXI	VCTCGAGB	1 cut(s)	1064
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	1087
PsuI	RGATCY	3 cut(s)	581, 1192, 1855
PvuI	CGATCG	1 cut(s)	1467
RsaI	GTAC	1 cut(s)	1020
RsaNI	GTAC	1 cut(s)	1019
RseI	CAYNNNNRTG	1 cut(s)	1392
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	8 cut(s)	576, 669, 1247, 1346, 1380, 1674, 1782, 1860
SatI	GCNGC	6 cut(s)	255, 289, 292, 2074, 2089, 2217
Sau3AI	GATC	9 cut(s)	508, 581, 613, 1192, 1464, 1623, 1695, 1741, 1855
Sau96I	GGNCC	7 cut(s)	336, 605, 815, 1146, 1517, 2273, 2327
SchI	GAGTC	5 cut(s)	307, 440, 785, 836, 1954
ScrFI	CCNGG	5 cut(s)	129, 642, 681, 1106, 2325
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	1524, 1605
SfcI	CTRYAG	3 cut(s)	363, 2038, 2379
SfoI	GGCGCC	1 cut(s)	808
Sfr274I	CTCGAG	1 cut(s)	1064
SinI	GGWCC	5 cut(s)	336, 815, 1146, 2273, 2327
SlaI	CTCGAG	1 cut(s)	1064
SmiMI	CAYNNNNRTG	1 cut(s)	1392
SmlI	CTYRAG	2 cut(s)	1064, 1582
SmoI	CTYRAG	2 cut(s)	1064, 1582
SpeI	ACTAGT	1 cut(s)	1370
Sse9I	AATT	9 cut(s)	282, 352, 675, 799, 937, 1042, 1093, 1248, 2347
SseBI	AGGCCT	1 cut(s)	2290
SsiI	CCGC	6 cut(s)	254, 294, 339, 1204, 2219, 2237
SspDI	GGCGCC	1 cut(s)	806
SspI	AATATT	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	2290
StyD4I	CCNGG	5 cut(s)	127, 640, 679, 1104, 2323
StyI	CCWWGG	2 cut(s)	608, 2232
TaaI	ACNGT	3 cut(s)	60, 665, 1083
TaiI	ACGT	3 cut(s)	1203, 1341, 2392
TaqI	TCGA	3 cut(s)	1065, 1402, 1463
TaqII	GACCGA	1 cut(s)	1490
TasI	AATT	9 cut(s)	282, 352, 675, 799, 937, 1042, 1093, 1248, 2347
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	6 cut(s)	965, 1384, 1829, 1846, 1894, 2189
Tru1I	TTAA	8 cut(s)	576, 669, 1247, 1346, 1380, 1674, 1782, 1860
Tru9I	TTAA	8 cut(s)	576, 669, 1247, 1346, 1380, 1674, 1782, 1860
TscAI	CASTG	2 cut(s)	1088, 1764
TseFI	GTSAC	3 cut(s)	443, 634, 683
TseI	GCWGC	5 cut(s)	288, 291, 2073, 2088, 2216
Tsp45I	GTSAC	3 cut(s)	443, 634, 683
TspRI	CASTG	2 cut(s)	1088, 1764
Van91I	CCANNNNNTGG	1 cut(s)	1184
VpaK11BI	GGWCC	5 cut(s)	336, 815, 1146, 2273, 2327
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	3 cut(s)	675, 937, 1042
XbaI	TCTAGA	2 cut(s)	1054, 1948
XceI	RCATGY	1 cut(s)	1980
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 1135
XhoI	CTCGAG	1 cut(s)	1064
XmnI	GAANNNNTTC	1 cut(s)	1194
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.