Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006361

Physical Location & Seq

Genomic Coordinates Reverse (-)

44343126 .. 44351398

Gene Structure 8273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034527

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2853 bp

ATGGGCGTTTTGCTCAAAGAAGCGCTTAGGAGGCTGTGCAGTGCCAATCAGTGGGCTTATGCCGTCTTCTGGACGATCGGCTGCCAAAACCCTAATTTGTTAATTTGGGAAGAATCTCATTATGAACCATCACTATCGTCTCGACATACACGCATTGCTGGAACTGAAAGTGGTGATTCACCATTTGGAGAGTGGGAAGGATGCTGGGTTTCCTCTAAAGTGTGTTCATCTTCTCATGGCATTCAACCAGAGGAAAGAGTCTCTGCACTTCTTAACAAAATGTTGATGGATAAACCATTTACTATAGTGGGCGACGGGATTGTTGGACGAGCTGCATTTACTGGACATCATCAATGGATTCTTTCAAGCAATTACTCTAAATATGCCCATCCACCAGAGGTCCTAAATGAGATGCACCACCAATTTTCAGCTGGAATGCAGACAGTTGCAGTTATTCCTGTTCTCCCTCACGGCGTTGTTCAGCTCGGTTCTAGTTTGGCTATTATGGAGAATATAGGATTCATTAATGACGTCAAGAGTTTGATCCTGCAACTTGGATGTGTTCCTGGTGCTCTTTTATCTGAAAATTATGAGACAAAAAGTTCTGATGAGAAAGTTGGGGTACCTTATACTATTGGAATGCTGACAACTGTTCATCCAGGCGGACATACAACAAGTTCTACTCATATGACGAGTAGCAACAATCATCAAATCCACCCATCTCAGGCTTCCAGGCTTGTTGGTCAACCTTCTCATTCTCTTTATGAAGAGATTCAGAATATTTCTCAAGCTACTGCTTCAACATTTCAAACTCCTAACCTTGCCCAAATTCTGCCTAAAATTCATGATGACCGTCAACAACCAGTGATGAAGCCAAAGTTTCCTCTTGGAGGCCAACTAAGGGATGGAGTTGGGGTAGCTGAAGTGATCTCCTCCAATTCTGATGCATGGTTGAACCACCTTGCTCCTTCTAATTTGAGGTGTGGACTCAAGTACCCATGTGGTTCTGTTCAATCAGCTGCAAGTCAGGGAAGCTTAGAGTTGATGGAACATCAGATCTTGTCTGGTGGTAGCATGAGGCCTACTTTTAGTAGCAAAATTAGTGCATCAAATGGTTTCATGACTGAGCCTAGAACAGGTGGAATTCTAACCCTTGATCAGAGAAAAAGTTTGATAACCACTCCAGCATTGCTTGGGGGAAGTCAAACACATGGTGGATCGAGTACTCATTCGAGGCCAACTTCGGCTACTTGTTCTCATATAGAGACACATGGGGCTGCTGACATTAATCTCTCTGGAACATATCTGTCTGGGGTTGAATGTCAAAAGGCTGATTCATTCAAAACAGACAGGATTTCTTTATCTAGTTTGGCAGATCAATCAGCTTCTCAGGATATACTTTCAAAAGGCTCTGACCAGAGGCAGTTTTCCACGGAAGTGAAGCTTACTCAGAGTGATTTGCCTCCAGTGGAGCAAAGGACAGATAATAAATTGTTTCAAGCCCTTAACGTCCCATTGACTCATCCATGTGAACATATATCTTCGAGTGATCACTCAGGATCTGTAAATGCTACAAACGATGATATGTGTACTCAAACAGGGGATGACTTGTTTGATGTGTTGGGTGTGGATTTCAAAAATAAGTTGCTTAATGGTAATTGGAATAATTTGCTGGCTGATGAACCAGGTTCAAACAAAAGAGATCTTGCTGAGACTACTTTGGCATTCACAAATGTGAAGGATCTGGTTTCTGATTATTATTCAGCAAGTGAAGGCATATCAAACAGTACTATCTTCTCTGGGGCAGATGCTGACCATCTTTTAGATGCTGTGGTCTCGAAGGCGCACTCTACTATCAAGCAGAGCTCTGATGATAATGTGTCTTGTAAAACAACATTGACAAAAATCAGTACCTCTTCTGTCCCTAGTGGTTCTCTCACTCATGGACAGGTTAGCGTGTCTAATCAAGTGCCGGGGGGGACATTTGACCTTCCTAAGGATCTTGGAAAAGCAGGCTTAGTAGAAATCAGTTCTTTCCTATCTGGGTGTAGCAGGGATGATGCAGGAAACTGTTCCCAGACTACATCCATATATGGATCTCAAGTTAGTTCTTGGGTTGAACAGGGCAATAATTCAAAGCATGAGAGTAGTGTTTCAACTGCATATTCTAAGAAGCCTGATCTAATGGGGAAATCAAATCGCAAAAGGCTGAAACCTGGCGAGAATCCTAGACCAAGACCAAAAGATCGCCAGATGATCCAAGATCGTGTGAAGGAGTTGCGTGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTGCTCGAACGTACCATCAAGCATATGCTTTTCCTGCAAAGTGTCACTAAGCATGCTGACAAGCTAAAACAAACAGGAAGAGCCAAGATTATTGGCAAAGAAGGTGGACTGCATCTAAAAGATAACTATGATGGAAGGGCAACATGGGCTTTTGATGTTGGGTCACAATCTATGGTCTGCCCCATCATAGTTGAGGATCTAGATTCACCTCGCCAGATGCTTGTGGAGATGCTTTGTGAAGAACAGGGTTTCTTTTTAGAAATTGCTGATATAATTAGAGGTTTGGGTTTGACCATCTTGAAAGGGGTGATGGAAACTCGGAATGATAAGATATGGGCACGCTTTGCTGTAGAGGCAAATAGGGACGTAACAAGGATGGAAATATTTATGTCCCTTGTTCACCTTTTGGAGCAAACTGTAAAAGGCACCGCGCCATCAGTCAATGCTATCAAGAACAACAGTATGGTCCACCATTCTTTCGCCCAAGCAGCCCCAATACCTGCAACTGGTAGGCCCAGTGGTTTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010073 GO:0010074 GO:0010078 GO:0010468 GO:0010479 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0098727 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

951

Amino Acids

102.94

Weight (kDa)

6.3

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	5 - 181	4.7e-33	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH_LHW	PF23176	744 - 803	1.7e-34	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27230 AT2G27230
fragaria_vesca	FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430 FvH4_3g26430
malus_domestica	MD03G1116900.v1.1 MD03G1155700.v1.1 MD11G1173100.v1.1
prunus_persica	Prupe.6G144300_v2.0.a1
pyrus_communis	pycom03g10980 pycom11g14740
rosa_chinensis	RchiOBHm_Chr5g0048491
rosa_laevigata	RLG00000034527
rosa_multiflora	Rmu_sc0001173.1_g000023
rosa_roxburghii	Rroxscaffold_1G00033350
rosa_rugosa	Rorug05G0238400 Rorug05G0238500
rosa_samantha	Rh5AG318800 Rh5BG328800 Rh5CG354800 Rh5DG339800
rosa_wichuraiana	Rw5G029780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	2830
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	2 cut(s)	622, 2747
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccII	CGCG	1 cut(s)	2753
AciI	CCGC	2 cut(s)	663, 2751
AclWI	GGATC	8 cut(s)	538, 1225, 1567, 1749, 2007, 2104, 2251, 2526
AcsI	RAATTY	3 cut(s)	828, 840, 1143
AcuI	CTGAAG	1 cut(s)	942
AcyI	GRCGYC	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	1214
AfaI	GTAC	7 cut(s)	624, 995, 1225, 1591, 1789, 1912, 2335
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	8 cut(s)	51, 69, 724, 890, 901, 1136, 1996, 2828
AjnI	CCWGG	5 cut(s)	565, 658, 731, 1684, 2215
AleI	CACNNNNGTG	2 cut(s)	1436, 1733
Alw21I	GWGCWC	2 cut(s)	574, 1868
Alw26I	GTCTC	6 cut(s)	144, 265, 587, 1259, 1706, 1840
AlwI	GGATC	8 cut(s)	538, 1225, 1567, 1749, 2007, 2104, 2251, 2526
AlwNI	CAGNNNCTG	2 cut(s)	1562, 1811
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	4 cut(s)	892, 1079, 1235, 2834
ApeKI	GCWGC	5 cut(s)	81, 332, 1019, 1277, 2810
ApoI	RAATTY	3 cut(s)	828, 840, 1143
AseI	ATTAAT	2 cut(s)	525, 1287
Asp700I	GAANNNNTTC	2 cut(s)	771, 2071
Asp718I	GGTACC	1 cut(s)	622
AspLEI	GCGC	3 cut(s)	25, 1846, 2755
AspS9I	GGNCC	3 cut(s)	400, 2788, 2835
AsuC2I	CCSGG	1 cut(s)	1974
AsuHPI	GGTGA	5 cut(s)	171, 185, 2520, 2641, 2714
AvaII	GGWCC	2 cut(s)	400, 2788
AxyI	CCTNAGG	1 cut(s)	1995
BaeGI	GKGCMC	1 cut(s)	2662
BaeI	ACNNNNGTAYC	2 cut(s)	977, 1010
BanI	GGYRCC	2 cut(s)	622, 2747
BanII	GRGCYC	1 cut(s)	1868
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	574, 1868
BbvI	GCAGC	5 cut(s)	68, 319, 1006, 1264, 2822
BceAI	ACGGC	2 cut(s)	47, 487
BciT130I	CCWGG	5 cut(s)	567, 660, 733, 1686, 2217
BclI	TGATCA	2 cut(s)	1156, 1549
BcnI	CCSGG	1 cut(s)	1974
BcoDI	GTCTC	6 cut(s)	144, 265, 587, 1259, 1706, 1840
BfaI	CTAG	6 cut(s)	492, 1131, 1365, 1926, 2229, 2522
BfmI	CTRYAG	2 cut(s)	303, 2670
BfoI	RGCGCY	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	2830
BglII	AGATCT	2 cut(s)	1056, 1702
BisI	GCNGC	5 cut(s)	82, 333, 1020, 1278, 2811
BlsI	GCNGC	5 cut(s)	83, 334, 1021, 1279, 2812
BmcAI	AGTACT	2 cut(s)	1225, 1789
Bme1390I	CCNGG	6 cut(s)	567, 660, 733, 1686, 1974, 2217
Bme18I	GGWCC	2 cut(s)	400, 2788
BmgT120I	GGNCC	3 cut(s)	400, 2788, 2835
BmiI	GGNNCC	2 cut(s)	624, 2749
BmrFI	CCNGG	6 cut(s)	567, 660, 733, 1686, 1974, 2217
BmrI	ACTGGG	1 cut(s)	2832
BmuI	ACTGGG	1 cut(s)	2832
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	1167, 1449
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	3 cut(s)	771, 974, 2085
BpuMI	CCSGG	1 cut(s)	1974
BsaHI	GRCGYC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	1840
BsaJI	CCNNGG	2 cut(s)	1431, 1973
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	8 cut(s)	51, 69, 724, 890, 901, 1136, 1996, 2828
Bse1I	ACTGG	5 cut(s)	346, 863, 1466, 2833, 2838
Bse21I	CCTNAGG	1 cut(s)	1995
Bse3DI	GCAATG	2 cut(s)	153, 1187
BseBI	CCWGG	5 cut(s)	567, 660, 733, 1686, 2217
BseDI	CCNNGG	2 cut(s)	1431, 1973
BseLI	CCNNNNNNNGG	8 cut(s)	51, 69, 724, 890, 901, 1136, 1996, 2828
BseMI	GCAATG	2 cut(s)	153, 1187
BseMII	CTCAG	6 cut(s)	737, 1116, 1403, 1463, 1569, 1701
BseNI	ACTGG	5 cut(s)	346, 863, 1466, 2833, 2838
BseRI	GAGGAG	1 cut(s)	922
BseSI	GKGCMC	1 cut(s)	2662
BseXI	GCAGC	5 cut(s)	68, 319, 1006, 1264, 2822
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	2 cut(s)	58, 249
Bsh1236I	CGCG	1 cut(s)	2753
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	894, 1081, 1237, 2836
BshNI	GGYRCC	2 cut(s)	622, 2747
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	574, 1868
BsiSI	CCGG	1 cut(s)	1973
BslFI	GGGAC	5 cut(s)	1496, 1907, 1993, 2698, 2699
BslI	CCNNNNNNNGG	8 cut(s)	51, 69, 724, 890, 901, 1136, 1996, 2828
BsmAI	GTCTC	6 cut(s)	144, 265, 587, 1259, 1706, 1840
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	5 cut(s)	1496, 1907, 1993, 2698, 2699
BsmI	GAATGC	4 cut(s)	240, 441, 645, 1724
BsnI	GGCC	4 cut(s)	894, 1081, 1237, 2836
Bso31I	GGTCTC	1 cut(s)	1840
Bsp1286I	GDGCHC	3 cut(s)	574, 1868, 2662
BspACI	CCGC	2 cut(s)	663, 2751
BspANI	GGCC	4 cut(s)	894, 1081, 1237, 2836
BspCNI	CTCAG	6 cut(s)	736, 1117, 1402, 1462, 1568, 1702
BspFNI	CGCG	1 cut(s)	2753
BspHI	TCATGA	2 cut(s)	844, 1119
BspLI	GGNNCC	2 cut(s)	624, 2749
BspMI	ACCTGC	1 cut(s)	2830
BspPI	GGATC	8 cut(s)	538, 1225, 1567, 1749, 2007, 2104, 2251, 2526
BspQI	GCTCTTC	1 cut(s)	2395
BspT107I	GGYRCC	2 cut(s)	622, 2747
BspTNI	GGTCTC	1 cut(s)	1840
BsrDI	GCAATG	2 cut(s)	153, 1187
BsrI	ACTGG	5 cut(s)	346, 863, 1466, 2833, 2838
BssECI	CCNNGG	2 cut(s)	1431, 1973
BssNI	GRCGYC	1 cut(s)	531
Bst2UI	CCWGG	5 cut(s)	567, 660, 733, 1686, 2217
Bst4CI	ACNGT	7 cut(s)	445, 652, 854, 1787, 2072, 2740, 2783
Bst6I	CTCTTC	3 cut(s)	762, 1921, 2395
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	2666
BstC8I	GCNNGC	4 cut(s)	1674, 2014, 2376, 2662
BstDSI	CCRYGG	1 cut(s)	1431
BstENI	CCTNNNNNAGG	3 cut(s)	888, 1134, 1994
BstFNI	CGCG	1 cut(s)	2753
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	3 cut(s)	25, 1846, 2755
BstMAI	GTCTC	6 cut(s)	144, 265, 587, 1259, 1706, 1840
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 2356, 2468, 2666, 2675, 2810
BstNI	CCWGG	5 cut(s)	567, 660, 733, 1686, 2217
BstNSI	RCATGY	1 cut(s)	2378
BstSCI	CCNGG	6 cut(s)	565, 658, 731, 1684, 1972, 2215
BstSFI	CTRYAG	2 cut(s)	303, 2670
BstSLI	GKGCMC	1 cut(s)	2662
BstUI	CGCG	1 cut(s)	2753
BstV1I	GCAGC	5 cut(s)	68, 319, 1006, 1264, 2822
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	7 cut(s)	1056, 1559, 1702, 1741, 1999, 2096, 2518
BstYI	RGATCY	7 cut(s)	1056, 1559, 1702, 1741, 1999, 2096, 2518
Bsu36I	CCTNAGG	1 cut(s)	1995
BsuRI	GGCC	4 cut(s)	894, 1081, 1237, 2836
BtgI	CCRYGG	1 cut(s)	1431
BtsI	GCAGTG	2 cut(s)	46, 2321
BtsIMutI	CAGTG	6 cut(s)	46, 56, 870, 1473, 2321, 2845
BveI	ACCTGC	1 cut(s)	2830
Cac8I	GCNNGC	4 cut(s)	1674, 2014, 2376, 2662
CaiI	CAGNNNCTG	2 cut(s)	1562, 1811
CciI	TCATGA	2 cut(s)	844, 1119
CfoI	GCGC	3 cut(s)	25, 1846, 2755
Cfr13I	GGNCC	3 cut(s)	400, 2788, 2835
CsiI	ACCWGGT	1 cut(s)	1684
Csp6I	GTAC	7 cut(s)	623, 994, 1224, 1590, 1788, 1911, 2334
CspCI	CAANNNNNGTGG	2 cut(s)	2407, 2442
CviQI	GTAC	7 cut(s)	623, 994, 1224, 1590, 1788, 1911, 2334
DraIII	CACNNNGTG	1 cut(s)	1214
Eam1104I	CTCTTC	3 cut(s)	762, 1921, 2395
EarI	CTCTTC	3 cut(s)	762, 1921, 2395
EciI	GGCGGA	1 cut(s)	678
Ecl136II	GAGCTC	1 cut(s)	1866
Eco147I	AGGCCT	1 cut(s)	1081
Eco24I	GRGCYC	1 cut(s)	1868
Eco31I	GGTCTC	1 cut(s)	1840
Eco47I	GGWCC	2 cut(s)	400, 2788
Eco47III	AGCGCT	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	1866
Eco57I	CTGAAG	1 cut(s)	942
Eco81I	CCTNAGG	1 cut(s)	1995
EcoICRI	GAGCTC	1 cut(s)	1866
EcoNI	CCTNNNNNAGG	3 cut(s)	888, 1134, 1994
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	1143
EcoRII	CCWGG	5 cut(s)	565, 658, 731, 1684, 2215
EcoT22I	ATGCAT	1 cut(s)	949
EcoT38I	GRGCYC	1 cut(s)	1868
Esp3I	CGTCTC	1 cut(s)	144
FalI	AAGNNNNNCTT	4 cut(s)	9, 41, 1428, 1460
FaqI	GGGAC	5 cut(s)	1496, 1907, 1993, 2698, 2699
FauNDI	CATATG	2 cut(s)	687, 2346
FbaI	TGATCA	2 cut(s)	1156, 1549
Fnu4HI	GCNGC	5 cut(s)	82, 333, 1020, 1278, 2811
FriOI	GRGCYC	1 cut(s)	1868
Fsp4HI	GCNGC	5 cut(s)	82, 333, 1020, 1278, 2811
FspBI	CTAG	6 cut(s)	492, 1131, 1365, 1926, 2229, 2522
GlaI	GCGC	3 cut(s)	24, 1845, 2754
GluI	GCNGC	5 cut(s)	82, 333, 1020, 1278, 2811
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	1167, 1449
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	894, 1081, 1237, 2836
HapII	CCGG	1 cut(s)	1973
HhaI	GCGC	3 cut(s)	25, 1846, 2755
Hin1I	GRCGYC	1 cut(s)	531
Hin6I	GCGC	3 cut(s)	23, 1844, 2753
HinP1I	GCGC	3 cut(s)	23, 1844, 2753
HincII	GTYRAC	2 cut(s)	746, 857
HindII	GTYRAC	2 cut(s)	746, 857
HindIII	AAGCTT	2 cut(s)	1033, 1442
HpaII	CCGG	1 cut(s)	1973
HphI	GGTGA	5 cut(s)	171, 185, 2520, 2641, 2714
Hpy166II	GTNNAC	8 cut(s)	746, 857, 986, 1532, 1590, 2429, 2722, 2791
Hpy8I	GTNNAC	8 cut(s)	746, 857, 986, 1532, 1590, 2429, 2722, 2791
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4III	ACNGT	7 cut(s)	445, 652, 854, 1787, 2072, 2740, 2783
HpyCH4IV	ACGT	4 cut(s)	531, 1509, 2332, 2688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 2356, 2468, 2666, 2675, 2810
HpySE526I	ACGT	4 cut(s)	531, 1509, 2332, 2688
Hsp92I	GRCGYC	1 cut(s)	531
HspAI	GCGC	3 cut(s)	23, 1844, 2753
KpnI	GGTACC	1 cut(s)	626
Ksp22I	TGATCA	2 cut(s)	1156, 1549
LguI	GCTCTTC	1 cut(s)	2395
LmnI	GCTCC	4 cut(s)	970, 1471, 2300, 2731
Lsp1109I	GCAGC	5 cut(s)	68, 319, 1006, 1264, 2822
MabI	ACCWGGT	1 cut(s)	1684
MaeI	CTAG	6 cut(s)	492, 1131, 1365, 1926, 2229, 2522
MaeII	ACGT	4 cut(s)	531, 1509, 2332, 2688
MaeIII	GTNAC	3 cut(s)	2365, 2484, 2689
MboII	GAAGA	9 cut(s)	58, 122, 222, 779, 1533, 1786, 1908, 2412, 2573
MflI	RGATCY	7 cut(s)	1056, 1559, 1702, 1741, 1999, 2096, 2518
MhlI	GDGCHC	3 cut(s)	574, 1868, 2662
MlyI	GAGTC	3 cut(s)	267, 981, 1513
MmeI	TCCRAC	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	949
MroXI	GAANNNNTTC	2 cut(s)	771, 2071
MseI	TTAA	6 cut(s)	101, 273, 525, 1287, 1506, 1650
MslI	CAYNNNNRTG	3 cut(s)	1436, 1527, 1733
MspA1I	CMGCKG	2 cut(s)	431, 1019
MspI	CCGG	1 cut(s)	1973
MspR9I	CCNGG	6 cut(s)	567, 660, 733, 1686, 1974, 2217
Mva1269I	GAATGC	4 cut(s)	240, 441, 645, 1724
MvaI	CCWGG	5 cut(s)	567, 660, 733, 1686, 2217
MvnI	CGCG	1 cut(s)	2753
MwoI	GCNNNNNNNGC	6 cut(s)	31, 2356, 2468, 2666, 2675, 2810
NciI	CCSGG	1 cut(s)	1974
NdeI	CATATG	2 cut(s)	687, 2346
NlaIV	GGNNCC	2 cut(s)	624, 2749
NmuCI	GTSAC	2 cut(s)	2365, 2484
NsiI	ATGCAT	1 cut(s)	949
NspI	RCATGY	1 cut(s)	2378
OliI	CACNNNNGTG	2 cut(s)	1436, 1733
PaeI	GCATGC	1 cut(s)	2378
PagI	TCATGA	2 cut(s)	844, 1119
PceI	AGGCCT	1 cut(s)	1081
PciSI	GCTCTTC	1 cut(s)	2395
PctI	GAATGC	4 cut(s)	240, 441, 645, 1724
PdmI	GAANNNNTTC	2 cut(s)	771, 2071
PfeI	GAWTC	8 cut(s)	113, 176, 358, 519, 772, 1334, 2224, 2525
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	83, 334, 1021, 1279, 2812
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	3 cut(s)	266, 981, 1513
PpsI	GAGTC	3 cut(s)	266, 981, 1513
PpuMI	RGGWCCY	1 cut(s)	400
PshBI	ATTAAT	2 cut(s)	525, 1287
Psp124BI	GAGCTC	1 cut(s)	1868
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	5 cut(s)	565, 658, 731, 1684, 2215
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	5 cut(s)	565, 658, 731, 1684, 2215
PspN4I	GGNNCC	2 cut(s)	624, 2749
PspPI	GGNCC	3 cut(s)	400, 2788, 2835
PspPPI	RGGWCCY	1 cut(s)	400
PstNI	CAGNNNCTG	2 cut(s)	1562, 1811
PsuI	RGATCY	7 cut(s)	1056, 1559, 1702, 1741, 1999, 2096, 2518
PvuI	CGATCG	1 cut(s)	78
PvuII	CAGCTG	2 cut(s)	431, 1019
RsaI	GTAC	7 cut(s)	624, 995, 1225, 1591, 1789, 1912, 2335
RsaNI	GTAC	7 cut(s)	623, 994, 1224, 1590, 1788, 1911, 2334
RseI	CAYNNNNRTG	3 cut(s)	1436, 1527, 1733
SacI	GAGCTC	1 cut(s)	1868
SapI	GCTCTTC	1 cut(s)	2395
SaqAI	TTAA	6 cut(s)	101, 273, 525, 1287, 1506, 1650
SatI	GCNGC	5 cut(s)	82, 333, 1020, 1278, 2811
Sau96I	GGNCC	3 cut(s)	400, 2788, 2835
ScaI	AGTACT	2 cut(s)	1225, 1789
SchI	GAGTC	3 cut(s)	267, 981, 1513
ScrFI	CCNGG	6 cut(s)	567, 660, 733, 1686, 1974, 2217
SduI	GDGCHC	3 cut(s)	574, 1868, 2662
SexAI	ACCWGGT	1 cut(s)	1684
SfcI	CTRYAG	2 cut(s)	303, 2670
SinI	GGWCC	2 cut(s)	400, 2788
SmiMI	CAYNNNNRTG	3 cut(s)	1436, 1527, 1733
SmlI	CTYRAG	3 cut(s)	786, 989, 2100
SmoI	CTYRAG	3 cut(s)	786, 989, 2100
SphI	GCATGC	1 cut(s)	2378
SseBI	AGGCCT	1 cut(s)	1081
SsiI	CCGC	2 cut(s)	663, 2751
SspI	AATATT	2 cut(s)	781, 2706
SspMI	CTAG	6 cut(s)	492, 1131, 1365, 1926, 2229, 2522
SstI	GAGCTC	1 cut(s)	1868
StuI	AGGCCT	1 cut(s)	1081
StyD4I	CCNGG	6 cut(s)	565, 658, 731, 1684, 1972, 2215
TaaI	ACNGT	7 cut(s)	445, 652, 854, 1787, 2072, 2740, 2783
TaiI	ACGT	4 cut(s)	534, 1512, 2335, 2691
TaqI	TCGA	6 cut(s)	142, 1220, 1232, 1544, 1838, 2328
TatI	WGTACW	3 cut(s)	1223, 1589, 1787
TfiI	GAWTC	8 cut(s)	113, 176, 358, 519, 772, 1334, 2224, 2525
Tru1I	TTAA	6 cut(s)	101, 273, 525, 1287, 1506, 1650
Tru9I	TTAA	6 cut(s)	101, 273, 525, 1287, 1506, 1650
TscAI	CASTG	6 cut(s)	46, 56, 870, 1473, 2328, 2845
TseFI	GTSAC	2 cut(s)	2365, 2484
TseI	GCWGC	5 cut(s)	81, 332, 1019, 1277, 2810
Tsp45I	GTSAC	2 cut(s)	2365, 2484
TspGWI	ACGGA	1 cut(s)	1448
TspRI	CASTG	6 cut(s)	46, 56, 870, 1473, 2328, 2845
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	400, 2788
VspI	ATTAAT	2 cut(s)	525, 1287
XagI	CCTNNNNNAGG	3 cut(s)	888, 1134, 1994
XapI	RAATTY	3 cut(s)	828, 840, 1143
XbaI	TCTAGA	1 cut(s)	2521
XceI	RCATGY	1 cut(s)	2378
XcmI	CCANNNNNNNNNTGG	3 cut(s)	189, 428, 902
XmnI	GAANNNNTTC	2 cut(s)	771, 2071
XspI	CTAG	6 cut(s)	492, 1131, 1365, 1926, 2229, 2522
ZraI	GACGTC	1 cut(s)	532
ZrmI	AGTACT	2 cut(s)	1225, 1789
Zsp2I	ATGCAT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.