Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Reverse (-)

15157425 .. 15163181

Gene Structure 5757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1142500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGAAGGTCCATGAGACAAGGTCTCATTCTCATGGAAATGCTGAGGAGGACAAAGTGACGACGAGGAAGCAGAAAGCCGAGAACAAGGCTCATGAGGCAGAGCAGTCTCCAAAGAAGGCCAAATCTGAAGGTGACAACGCAAATGGAAAGTCCGCGGAGAACGTAGTTGCCGAGTATGAGAAGCTCTGCACAGCGGTCAAAGACAACCTTTCAACCGAACAGATGCGCGAAATCTTGGAAGCTAATGGCCAGGACTCCTCCGGCTCTGATTCCACCATTCTACGAAAATGCCAAGACTTGCTGTTTTATGGTCCATTAGATAAATGTCCAGCATGCAATGGGGATTTGGAGTTCAGGGTTATACGCTATTTTTGCACTGGATCTTATAGTGAGTGGGCAACTTGTACATTTAATACAAAGAATCCGCCAAGGAAACAAGAACCAATCAAGTTGCCAGATAGTGTCCTCAACTCTCCTGCATCCGATTTGCTAAAGAATTACGAGGACCCAAGTCGCCGTCCTCACAAGGATTTAAGCATCCCAGTTAAGCCTTTTACTGGGATATTGATCTCGCTTATGGGCCGTCTTAGTGCATCTCATCAATACTGGAGAAAAGAAATAGAAAAACATGGAGGAAAACTTGCCAACCATGTGATTGGTGCAACTTGCCTGATTGCATCCCCTGCGGAGCGAGACAGAGGCGGCACTGGTAAACTTGCTGAAGCAATGGAAAGAGGCATTCCTGTAGTAAGCGAAGCATGGCTGAAAGACAGCATCGAGAAACAAGAACCCCAGCCTCTCGAAGCTTATGATATTGTTAGTGATCTTGCTCCTGATGGAAGAGGAGTTCCATGGGACAAAATGGATCCAAGCGAAGAGGCACTTGAGTCCCTTTTGACAGAACTGAAGATGTATGGGAAGAGAAGTGTCCACAAGGATAGTAAATTGAGGGAGCGAGATGGGAAGATCTTTGAGAGAGACAGCATATTATACAACTGCGCCTTTTCTCGTTGTGATCTAGGCAGAAAACTGAACGATTATTCCATCATGCAACTTATTACGGTACCAGAGAGCAACCTGCATTTATACTACAAGAAAGGGAAAGTTGGCGATGACCCTAATGCGGAGGAAAGGCTTGAAGAGTGGGATAATGTGGACAACGCTGTCAAGGAGTTTGTGAGGCTTTTTGAGGAAGCAACTGGAAATGAGTTTGAACCATGGGAAAGAGAGAAGAAAATCCAGAAGAAGCCGCTGAAGTTTTACCCTATAGACATGGACGATGGAGTTGATGTGAGGCATGGAGGGTTTGGGCTTCGCCAATTGGGAGTTGCTGCCACACATTGCAAACTTGAGCCAATGGTTGCAAATTTCATGATGGTTTTATGCAGTCAAGAGATTTACAAATATGCTTTAATGGAAATGGGTTATGACGCGCCCGAACTTCCAATGGGGATGCTTTCCGTTGTCCACCTAAAACTATGTGAAGAGGTTCTTCAGAAATTCGTGGAGACATTGAAATCAATGAAGGATGCAGGGCCGAAGGCTGAGGCAGTTTGGTCAGATTTTAGTCAAAGATGGTTCACCCTTATGCACTCTACTAGACCTTTTATCTTCAAAGACTATCAGGAACTTGCAGATAATGCTGCAGCTGCACTTGAAACTATTCGAGACATAACCATGGCTTCCCATCTCATCGGAGACATGGGTGAATCTACCCTTGATGACCCCTTGTCCGAGCGATACAACAAATTGGGCTGCTCAATTTCTCCACTGGATAAGGAATCTGATGACTACAAGATGATCCTGAAGTACCTGGAGAAGACCTACGAACCTGTCAAAGTTGGAGATGTTGAATATGGGGTGTCTGTCGATAACATATTTCTTATCGAATCAAGTGCTTGCCAATCTCTGGATGAAATAAAGAAGTTACCGAACAAAGTGCTCTTATGGTGTGGAACACGGAGCTCAAATATGTTGAGGCACCTGCATAAGGGTTTCTTGCCAGCAATATGCTCTCTACCTGTTCCAGGCTATATGTTTGGAAGGGCTATTGTGTGCTCTGATGCTGCTGCAGAAGCTGCTAGGTACGGGTTTACTGCTGTGGACAGACCGGAAGGGTTCTTGGTTTTAGCTGTAGCTTCTCAGGGAGACAAGATCACTGAGGTTAAGACCGCACCGGAGGATACCAAATCTTTAGAAGAGAAGAAAGTAGGAGTTAAAGGCTTGGGGAGGAAGAAAACTGATGAATCGGAGCACTTTGTTTGGCAAGACGATATCAAAGTTCCTTGTGGCCGCCTGGTACCTTCAGATGATAAAGACAGCGTTCTCGAGTACAACGAGTATGCTATTTATGATCCGACACAGGTAAGCGTCAGGTTTTTGGTAGCTGTGAAGTATGAAGAGAAGGAATCAGTGATGGAGCCTATGAAGCCGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

814

Amino Acids

91.64

Weight (kDa)

5.36

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	50 - 104	3.3e-15	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	106 - 145	3.9e-13	PADR1 domain, zinc ribbon fold
BRCT	PF00533	182 - 259	1.2e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	185 - 271	2e-06	BRCT domain
WGR	PF05406	331 - 409	1.8e-08	WGR domain
PARP_reg	PF02877	448 - 581	2e-25	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	595 - 798	1.4e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1992
AasI	GACNNNNNNGTC	1 cut(s)	1163
Acc36I	ACCTGC	2 cut(s)	1086, 1992
Acc65I	GGTACC	2 cut(s)	1063, 2299
AccB1I	GGYRCC	3 cut(s)	1063, 1980, 2299
AccB7I	CCANNNNNTGG	1 cut(s)	1909
AccII	CGCG	3 cut(s)	155, 228, 1433
AclWI	GGATC	5 cut(s)	388, 860, 873, 1795, 2348
AcoI	YGGCCR	2 cut(s)	247, 2290
AcsI	RAATTY	2 cut(s)	1366, 1499
AcuI	CTGAAG	7 cut(s)	147, 741, 926, 1274, 1478, 1826, 2289
AfaI	GTAC	6 cut(s)	406, 1065, 1811, 2087, 2301, 2333
AfiI	CCNNNNNNNGG	5 cut(s)	557, 1123, 1909, 1990, 2027
AgsI	TTSAA	7 cut(s)	213, 1139, 1214, 1516, 1615, 1658, 1853
AhdI	GACNNNNNGTC	1 cut(s)	1729
AjnI	CCWGG	4 cut(s)	249, 1812, 2026, 2295
AloI	GAACNNNNNNTCC	6 cut(s)	335, 367, 831, 863, 1025, 1057
AluBI	AGCT	9 cut(s)	184, 242, 806, 1649, 1965, 2078, 2132, 2138, 2387
AluI	AGCT	9 cut(s)	184, 242, 806, 1649, 1965, 2078, 2132, 2138, 2387
Alw21I	GWGCWC	4 cut(s)	1944, 1967, 2060, 2256
Alw26I	GTCTC	9 cut(s)	8, 27, 111, 687, 972, 1502, 1662, 1692, 2142
AlwI	GGATC	5 cut(s)	388, 860, 873, 1795, 2348
AlwNI	CAGNNNCTG	1 cut(s)	2078
Ama87I	CYCGRG	1 cut(s)	2327
AoxI	GGCC	5 cut(s)	117, 247, 580, 1535, 2290
ApeKI	GCWGC	8 cut(s)	1331, 1643, 1646, 1649, 1755, 2066, 2069, 2078
ApoI	RAATTY	2 cut(s)	1366, 1499
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	2 cut(s)	1488, 1662
Asp718I	GGTACC	2 cut(s)	1063, 2299
AspLEI	GCGC	3 cut(s)	228, 1001, 1435
AspS9I	GGNCC	5 cut(s)	7, 311, 505, 580, 1535
AsuHPI	GGTGA	3 cut(s)	143, 1573, 1718
AvaI	CYCGRG	1 cut(s)	2327
AvaII	GGWCC	3 cut(s)	7, 311, 505
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	3 cut(s)	1063, 1980, 2299
BanII	GRGCYC	1 cut(s)	1967
BbsI	GAAGAC	1 cut(s)	1826
Bbv12I	GWGCWC	4 cut(s)	1944, 1967, 2060, 2256
BbvCI	CCTCAGC	2 cut(s)	42, 1545
BbvI	GCAGC	8 cut(s)	1318, 1630, 1636, 1658, 1742, 2053, 2056, 2065
BccI	CCATC	8 cut(s)	830, 953, 1052, 1274, 1369, 1569, 1695, 2410
BceAI	ACGGC	2 cut(s)	501, 567
BcgI	CGANNNNNNTGC	4 cut(s)	1877, 1911, 1921, 1955
BciT130I	CCWGG	4 cut(s)	251, 1814, 2028, 2297
BciVI	GTATCC	1 cut(s)	2176
BcoDI	GTCTC	9 cut(s)	8, 27, 111, 687, 972, 1502, 1662, 1692, 2142
BfaI	CTAG	3 cut(s)	1019, 1599, 2082
BfmI	CTRYAG	5 cut(s)	744, 1266, 1644, 2070, 2133
BfuAI	ACCTGC	2 cut(s)	1086, 1992
BfuI	GTATCC	1 cut(s)	2176
BglII	AGATCT	1 cut(s)	966
Bme1390I	CCNGG	4 cut(s)	251, 1814, 2028, 2297
Bme18I	GGWCC	3 cut(s)	7, 311, 505
BmeRI	GACNNNNNGTC	1 cut(s)	1729
BmeT110I	CYCGRG	1 cut(s)	2327
BmgT120I	GGNCC	5 cut(s)	7, 311, 505, 580, 1535
BmiI	GGNNCC	6 cut(s)	507, 867, 1065, 1982, 2301, 2421
BmrFI	CCNGG	4 cut(s)	251, 1814, 2028, 2297
BmrI	ACTGGG	2 cut(s)	536, 567
BmsI	GCATC	9 cut(s)	213, 488, 546, 602, 686, 783, 1443, 1519, 2053
BmuI	ACTGGG	2 cut(s)	536, 567
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	1826
BpmI	CTGGAG	2 cut(s)	628, 1835
Bpu10I	CCTNAGC	2 cut(s)	42, 1545
BpuEI	CTTGAG	2 cut(s)	905, 1370
BsaBI	GATNNNNATC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	5 cut(s)	153, 428, 851, 1217, 1677
BsaWI	WCCGGW	2 cut(s)	2110, 2176
BsaXI	ACNNNNNCTCC	2 cut(s)	1275, 1305
Bsc4I	CCNNNNNNNGG	5 cut(s)	557, 1123, 1909, 1990, 2027
Bse1I	ACTGG	7 cut(s)	382, 542, 562, 611, 712, 1204, 1776
Bse3DI	GCAATG	3 cut(s)	343, 732, 1339
Bse8I	GATNNNNATC	1 cut(s)	566
BseBI	CCWGG	4 cut(s)	251, 1814, 2028, 2297
BseDI	CCNNGG	5 cut(s)	153, 428, 851, 1217, 1677
BseGI	GGATG	6 cut(s)	479, 537, 677, 1458, 1534, 1918
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	5 cut(s)	557, 1123, 1909, 1990, 2027
BseMI	GCAATG	3 cut(s)	343, 732, 1339
BseMII	CTCAG	4 cut(s)	33, 1536, 2151, 2156
BseNI	ACTGG	7 cut(s)	382, 542, 562, 611, 712, 1204, 1776
BseRI	GAGGAG	3 cut(s)	59, 247, 858
BseXI	GCAGC	8 cut(s)	1318, 1630, 1636, 1658, 1742, 2053, 2056, 2065
BseYI	CCCAGC	1 cut(s)	792
BsgI	GTGCAG	2 cut(s)	172, 1635
Bsh1236I	CGCG	3 cut(s)	155, 228, 1433
BshFI	GGCC	5 cut(s)	119, 249, 582, 1537, 2292
BshNI	GGYRCC	3 cut(s)	1063, 1980, 2299
BsiHKAI	GWGCWC	4 cut(s)	1944, 1967, 2060, 2256
BsiHKCI	CYCGRG	1 cut(s)	2327
BsiSI	CCGG	4 cut(s)	261, 2111, 2177, 2432
BslFI	GGGAC	2 cut(s)	869, 874
BslI	CCNNNNNNNGG	5 cut(s)	557, 1123, 1909, 1990, 2027
BsmAI	GTCTC	9 cut(s)	8, 27, 111, 687, 972, 1502, 1662, 1692, 2142
BsmFI	GGGAC	2 cut(s)	869, 874
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	5 cut(s)	119, 249, 582, 1537, 2292
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	2327
Bsp1286I	GDGCHC	4 cut(s)	1944, 1967, 2060, 2256
Bsp1407I	TGTACA	1 cut(s)	404
Bsp143I	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
Bsp19I	CCATGG	3 cut(s)	851, 1217, 1677
BspANI	GGCC	5 cut(s)	119, 249, 582, 1537, 2292
BspCNI	CTCAG	4 cut(s)	34, 1537, 2152, 2155
BspFNI	CGCG	3 cut(s)	155, 228, 1433
BspHI	TCATGA	2 cut(s)	91, 1371
BspLI	GGNNCC	6 cut(s)	507, 867, 1065, 1982, 2301, 2421
BspMAI	CTGCAG	2 cut(s)	1648, 2074
BspMI	ACCTGC	2 cut(s)	1086, 1992
BspPI	GGATC	5 cut(s)	388, 860, 873, 1795, 2348
BspT107I	GGYRCC	3 cut(s)	1063, 1980, 2299
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	3 cut(s)	343, 732, 1339
BsrGI	TGTACA	1 cut(s)	404
BsrI	ACTGG	7 cut(s)	382, 542, 562, 611, 712, 1204, 1776
BssECI	CCNNGG	5 cut(s)	153, 428, 851, 1217, 1677
BssMI	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
BssT1I	CCWWGG	4 cut(s)	428, 851, 1217, 1677
Bst2UI	CCWGG	4 cut(s)	251, 1814, 2028, 2297
Bst4CI	ACNGT	1 cut(s)	1063
Bst6I	CTCTTC	7 cut(s)	835, 870, 914, 1134, 1479, 2193, 2394
BstAPI	GCANNNNNTGC	3 cut(s)	683, 1640, 2078
BstAUI	TGTACA	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	334, 1900, 2004
BstDEI	CTNAG	5 cut(s)	42, 587, 1545, 2142, 2160
BstDSI	CCRYGG	4 cut(s)	153, 851, 1217, 1677
BstENI	CCTNNNNNAGG	2 cut(s)	1988, 2025
BstF5I	GGATG	6 cut(s)	479, 537, 677, 1458, 1534, 1918
BstFNI	CGCG	3 cut(s)	155, 228, 1433
BstHHI	GCGC	3 cut(s)	228, 1001, 1435
BstKTI	GATC	9 cut(s)	383, 570, 826, 868, 969, 1018, 1803, 2157, 2356
BstMAI	GTCTC	9 cut(s)	8, 27, 111, 687, 972, 1502, 1662, 1692, 2142
BstMBI	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 372, 683, 1640, 1649, 2075, 2078, 2428
BstNI	CCWGG	4 cut(s)	251, 1814, 2028, 2297
BstNSI	RCATGY	1 cut(s)	336
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	4 cut(s)	249, 1812, 2026, 2295
BstSFI	CTRYAG	5 cut(s)	744, 1266, 1644, 2070, 2133
BstUI	CGCG	3 cut(s)	155, 228, 1433
BstV1I	GCAGC	8 cut(s)	1318, 1630, 1636, 1658, 1742, 2053, 2056, 2065
BstV2I	GAAGAC	1 cut(s)	1826
BstX2I	RGATCY	3 cut(s)	380, 865, 966
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	3 cut(s)	380, 865, 966
BsuI	GTATCC	1 cut(s)	2176
BsuRI	GGCC	5 cut(s)	119, 249, 582, 1537, 2292
BtgI	CCRYGG	4 cut(s)	153, 851, 1217, 1677
BtgZI	GCGATG	1 cut(s)	1125
BtsCI	GGATG	6 cut(s)	479, 537, 677, 1458, 1534, 1918
BtsIMutI	CAGTG	5 cut(s)	375, 705, 1769, 2157, 2418
BveI	ACCTGC	2 cut(s)	1086, 1992
Cac8I	GCNNGC	3 cut(s)	334, 1900, 2004
CaiI	CAGNNNCTG	1 cut(s)	2078
CciI	TCATGA	2 cut(s)	91, 1371
CfoI	GCGC	3 cut(s)	228, 1001, 1435
Cfr13I	GGNCC	5 cut(s)	7, 311, 505, 580, 1535
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	2 cut(s)	1439, 2359
Csp6I	GTAC	6 cut(s)	405, 1064, 1810, 2086, 2300, 2332
CviQI	GTAC	6 cut(s)	405, 1064, 1810, 2086, 2300, 2332
DdeI	CTNAG	5 cut(s)	42, 587, 1545, 2142, 2160
DpnI	GATC	9 cut(s)	382, 569, 825, 867, 968, 1017, 1802, 2156, 2355
DpnII	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
DrdI	GACNNNNNNGTC	1 cut(s)	1163
DriI	GACNNNNNGTC	1 cut(s)	1729
DseDI	GACNNNNNNGTC	1 cut(s)	1163
EaeI	YGGCCR	2 cut(s)	247, 2290
Eam1104I	CTCTTC	7 cut(s)	835, 870, 914, 1134, 1479, 2193, 2394
Eam1105I	GACNNNNNGTC	1 cut(s)	1729
EarI	CTCTTC	7 cut(s)	835, 870, 914, 1134, 1479, 2193, 2394
EciI	GGCGGA	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	1965
Eco130I	CCWWGG	4 cut(s)	428, 851, 1217, 1677
Eco24I	GRGCYC	1 cut(s)	1967
Eco31I	GGTCTC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	2275
Eco47I	GGWCC	3 cut(s)	7, 311, 505
Eco53kI	GAGCTC	1 cut(s)	1965
Eco57I	CTGAAG	7 cut(s)	147, 741, 926, 1274, 1478, 1826, 2289
Eco88I	CYCGRG	1 cut(s)	2327
EcoICRI	GAGCTC	1 cut(s)	1965
EcoNI	CCTNNNNNAGG	2 cut(s)	1988, 2025
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	249, 1812, 2026, 2295
EcoRV	GATATC	1 cut(s)	2275
EcoT14I	CCWWGG	4 cut(s)	428, 851, 1217, 1677
EcoT38I	GRGCYC	1 cut(s)	1967
ErhI	CCWWGG	4 cut(s)	428, 851, 1217, 1677
FalI	AAGNNNNNCTT	8 cut(s)	192, 224, 867, 899, 1476, 1508, 1982, 2014
FaqI	GGGAC	2 cut(s)	869, 874
FokI	GGATG	6 cut(s)	466, 524, 664, 1465, 1541, 1925
FriOI	GRGCYC	1 cut(s)	1967
FspBI	CTAG	3 cut(s)	1019, 1599, 2082
GlaI	GCGC	3 cut(s)	227, 1000, 1434
GsaI	CCCAGC	1 cut(s)	796
GsuI	CTGGAG	2 cut(s)	628, 1835
HaeIII	GGCC	5 cut(s)	119, 249, 582, 1537, 2292
HapII	CCGG	4 cut(s)	261, 2111, 2177, 2432
HgaI	GACGC	2 cut(s)	1439, 2359
HhaI	GCGC	3 cut(s)	228, 1001, 1435
Hin6I	GCGC	3 cut(s)	226, 999, 1433
HinP1I	GCGC	3 cut(s)	226, 999, 1433
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	9 cut(s)	254, 269, 421, 887, 1709, 1781, 1889, 2246, 2408
HpaII	CCGG	4 cut(s)	261, 2111, 2177, 2432
HphI	GGTGA	3 cut(s)	143, 1573, 1718
Hpy166II	GTNNAC	7 cut(s)	713, 931, 1156, 1468, 1581, 2094, 2104
Hpy8I	GTNNAC	7 cut(s)	713, 931, 1156, 1468, 1581, 2094, 2104
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	8 cut(s)	109, 122, 1519, 1534, 2037, 2108, 2313, 2398
HpyCH4III	ACNGT	1 cut(s)	1063
HpyCH4IV	ACGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 372, 683, 1640, 1649, 2075, 2078, 2428
HpyF3I	CTNAG	5 cut(s)	42, 587, 1545, 2142, 2160
HpySE526I	ACGT	1 cut(s)	162
HspAI	GCGC	3 cut(s)	226, 999, 1433
KpnI	GGTACC	2 cut(s)	1067, 2303
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
LmnI	GCTCC	6 cut(s)	688, 835, 952, 1962, 2251, 2419
Lsp1109I	GCAGC	8 cut(s)	1318, 1630, 1636, 1658, 1742, 2053, 2056, 2065
LweI	GCATC	9 cut(s)	213, 488, 546, 602, 686, 783, 1443, 1519, 2053
MaeI	CTAG	3 cut(s)	1019, 1599, 2082
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	55, 131, 1926
MalI	GATC	9 cut(s)	382, 569, 825, 867, 968, 1017, 1802, 2156, 2355
MboI	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
MfeI	CAATTG	1 cut(s)	1319
MflI	RGATCY	3 cut(s)	380, 865, 966
MhlI	GDGCHC	4 cut(s)	1944, 1967, 2060, 2256
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	7 cut(s)	496, 944, 1319, 1366, 1499, 1748, 1761
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	248, 896
MmeI	TCCRAC	2 cut(s)	1822, 2381
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	1488, 1662
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	6 cut(s)	411, 533, 546, 1412, 2166, 2217
MslI	CAYNNNNRTG	4 cut(s)	30, 36, 1586, 1676
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	4 cut(s)	155, 194, 1252, 1649
MspI	CCGG	4 cut(s)	261, 2111, 2177, 2432
MspR9I	CCNGG	4 cut(s)	251, 1814, 2028, 2297
MunI	CAATTG	1 cut(s)	1319
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	4 cut(s)	251, 1814, 2028, 2297
MvnI	CGCG	3 cut(s)	155, 228, 1433
MwoI	GCNNNNNNNGC	8 cut(s)	95, 372, 683, 1640, 1649, 2075, 2078, 2428
NcoI	CCATGG	3 cut(s)	851, 1217, 1677
NdeII	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
NlaIV	GGNNCC	6 cut(s)	507, 867, 1065, 1982, 2301, 2421
NmeAIII	GCCGAG	2 cut(s)	103, 196
NmuCI	GTSAC	2 cut(s)	55, 131
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PaeR7I	CTCGAG	1 cut(s)	2327
PagI	TCATGA	2 cut(s)	91, 1371
PaqCI	CACCTGC	1 cut(s)	1992
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 2334
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	1488, 1662
PfeI	GAWTC	7 cut(s)	269, 421, 1709, 1781, 1889, 2246, 2408
PflFI	GACNNNGTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	1909
PleI	GAGTC	2 cut(s)	248, 895
PpsI	GAGTC	2 cut(s)	248, 895
PpuMI	RGGWCCY	1 cut(s)	505
PshAI	GACNNNNGTC	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	1967
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	4 cut(s)	249, 1812, 2026, 2295
PspFI	CCCAGC	1 cut(s)	792
PspGI	CCWGG	4 cut(s)	249, 1812, 2026, 2295
PspN4I	GGNNCC	6 cut(s)	507, 867, 1065, 1982, 2301, 2421
PspPI	GGNCC	5 cut(s)	7, 311, 505, 580, 1535
PspPPI	RGGWCCY	1 cut(s)	505
PstI	CTGCAG	2 cut(s)	1648, 2074
PstNI	CAGNNNCTG	1 cut(s)	2078
PsuI	RGATCY	3 cut(s)	380, 865, 966
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	1649
RsaI	GTAC	6 cut(s)	406, 1065, 1811, 2087, 2301, 2333
RsaNI	GTAC	6 cut(s)	405, 1064, 1810, 2086, 2300, 2332
RseI	CAYNNNNRTG	4 cut(s)	30, 36, 1586, 1676
SacI	GAGCTC	1 cut(s)	1967
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	6 cut(s)	411, 533, 546, 1412, 2166, 2217
Sau3AI	GATC	9 cut(s)	380, 567, 823, 865, 966, 1015, 1800, 2154, 2353
Sau96I	GGNCC	5 cut(s)	7, 311, 505, 580, 1535
SchI	GAGTC	2 cut(s)	248, 896
ScrFI	CCNGG	4 cut(s)	251, 1814, 2028, 2297
SduI	GDGCHC	4 cut(s)	1944, 1967, 2060, 2256
SfaNI	GCATC	9 cut(s)	213, 488, 546, 602, 686, 783, 1443, 1519, 2053
SfcI	CTRYAG	5 cut(s)	744, 1266, 1644, 2070, 2133
Sfr274I	CTCGAG	1 cut(s)	2327
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	7, 311, 505
SlaI	CTCGAG	1 cut(s)	2327
SmiMI	CAYNNNNRTG	4 cut(s)	30, 36, 1586, 1676
SmlI	CTYRAG	3 cut(s)	884, 1349, 2327
SmoI	CTYRAG	3 cut(s)	884, 1349, 2327
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	7 cut(s)	496, 944, 1319, 1366, 1499, 1748, 1761
SspMI	CTAG	3 cut(s)	1019, 1599, 2082
SstI	GAGCTC	1 cut(s)	1967
StyD4I	CCNGG	4 cut(s)	249, 1812, 2026, 2295
StyI	CCWWGG	4 cut(s)	428, 851, 1217, 1677
TaaI	ACNGT	1 cut(s)	1063
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	6 cut(s)	777, 801, 1666, 1869, 1887, 2328
TasI	AATT	7 cut(s)	496, 944, 1319, 1366, 1499, 1748, 1761
TatI	WGTACW	2 cut(s)	404, 2331
TauI	GCSGC	3 cut(s)	705, 1252, 2295
TfiI	GAWTC	7 cut(s)	269, 421, 1709, 1781, 1889, 2246, 2408
Tru1I	TTAA	6 cut(s)	411, 533, 546, 1412, 2166, 2217
Tru9I	TTAA	6 cut(s)	411, 533, 546, 1412, 2166, 2217
TscAI	CASTG	5 cut(s)	382, 712, 1776, 2164, 2418
TseFI	GTSAC	2 cut(s)	55, 131
TseI	GCWGC	8 cut(s)	1331, 1643, 1646, 1649, 1755, 2066, 2069, 2078
Tsp45I	GTSAC	2 cut(s)	55, 131
TspDTI	ATGAA	7 cut(s)	17, 1360, 1538, 1929, 2259, 2412, 2441
TspGWI	ACGGA	2 cut(s)	1450, 1975
TspRI	CASTG	5 cut(s)	382, 712, 1776, 2164, 2418
Tth111I	GACNNNGTC	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	1909
VpaK11BI	GGWCC	3 cut(s)	7, 311, 505
XagI	CCTNNNNNAGG	2 cut(s)	1988, 2025
XapI	RAATTY	2 cut(s)	1366, 1499
XceI	RCATGY	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	2327
XmnI	GAANNNNTTC	2 cut(s)	1488, 1662
XspI	CTAG	3 cut(s)	1019, 1599, 2082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.