Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Reverse (-)

39480326 .. 39484195

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGACGCGGAAGCAGAAGGCTGAGAACAAGGCACATGATGGAGAGCAACCTCCAAAGAAGCCTAAGGCTGATGATCACAATGGCCATGCAATTGGTAAAGCTTTACCTGCTGAGTTTGAGGAACTGTATTCTGCTGTCAAAGAGCATTTGTCAACTGAACAAATACGAGAAATCTTGGAAGCTAATGATCAAGACTCTTCTGGCTCAGATGCTGCTGTTCTCAGAAAATGCCAAGATCTGCTATTCTATGGGCCATTGGATAGTTGTCGTATTTGCAATGGTAAATTAGAGTTCAATGGTATACGCTATTCTTGCACCGGAACTTATAGCGAGTGGGCTTCTTGTACTTTCAACACGAGGGATCCACCAAGGAAGCAAGAAGCGATCAAGTTACCTGAGAGTCTTGAGAAGTCTCCTGCTTTAGATTTGCTAAAGAAATATCAGGACCCAAGTCGCCGGCCCAAGAGGGATTTAAGCACTCGTGATAAGCCCTTCACTGGGATGTTAATTTCTCTAATGGGCCGTCTTACTAGATCACATCAATACTGGAGACAGGAAGTAGATAAACATGGAGGAAAGGTTGCCAACCATGTGATTGGTGTGACATGCCTAATTGTGTCTCCTGCGGAACGAGAACGAGGTGGCACAAATAAACTGGCTGAAGCAATGGAGAGAGAGATACCTGTAGTAAGTGAACAGTGGCTGATTGATAGCATGGAAAAACAAGAACCCCAGCCTCTCGAAGCATATGAAATTGCTAGTGATCTTGCTCCTGATGGCAGAGGAATCCCATGGGACAAAATGGATCCCAGTGAAGAGGCAATCGAGTCACTTTCAGCAGAACTCAAGCTTTATGGGAAGAGAGCAGTCTACAAAGATACGAAACTGCAGGAGCAAGGCGGAAAAATCTTTGAGAGGGATGGGATATTGTACAACTGTGCCTTCTCACGTTGTGATCTAGGACGAAAACTGAACGATTATTGCATCTTGCAACTGATTATGGTGCCAGAGAACAGCCTGAACTTGTACTACAAGAAAGGCAGAGTTGGGGATGACCCCAATGCGGAGGAAAGGCTTGAAGAATGGAAGAATGTGGATGATGCTGTGAAAGAGTTTGTTAGAATATTTGAGGAAGTAACCGGAAATGAGTTTGAACCATGGGAAAGAGAGAAGAAAATCCAGAAGAAGCCATTTAAGTTTTACCCAATAGACATGGACGATGGAGTTGAAGTAAGACATGGAGGACTTGGTCTTCGACAGCTGGGAGTTGCTGCTACACATTGCAAACTTCAGCCCGAGGTTGCGAATTTTATGAAGGTCTTATGCAGTCAGGAGATTTACAAATATGCTCTGATGGAGATGGGATTGGATGCCCCAGACTTGCCAATGGGGATGCTTACCGATATCCACCTAAAAAGATGTGAGGATGTTCTTCAAGAGTTTGTGGAGAAATTGAAGTCAATGAAGGAATCAGGGCCAGAGTCTGAGGCTGTTTGGTCGGACTTTAGCCAAAGATGGTTTACCCTGCTGCACTCTACTAGGCCTTTCATATTCAGGAACTTCCAGGAAGTTGCAGATCATGCTGCTGCTGCACTGGAGACTGTTCGGGACATAACTCTGTCCTCGCATCTTATTGGAGACATGAGTGGATCTACCATTAATGATCCCTTGTCCGATAGATGTAGCAAATTGGGATGCTCAATCTCCCCACTTGATAAGGAATCCGATGATTACAAAATGATTCTGAAGTACCTGGACAAGACCTATGAACCTGTCAAAGTTGGAGATATTGAATACGGGGTGTCTGTGGAGAACATATTCGTTGTTGAATCAAATGCCTGTCCATCTTTGGATGAAATAAAGAAGTTGCCTAACAAATTTCTCCTATGGTGTGGGACACGGAGCTCAAATCTGATGAGGCACTTGAATAAGGGTTTCTTGCCAGCAATATGCTCTCTCCCTGTCCCAGGCTATATGTTTGGGAAAGCAATTGTTTGCTCTGATACTGCCGCAGAGGCTGCAAGGTATGGTTATACTGCTGTGGACAGACCAGAGGGTTTCTTAGTTTTGGCTGTGGCTTCTCTAGGTGATGAGATTATTGAGTTGAAAAACCCACCAGAGGACACAAAATCTTTAGAGGACAAGAAAGTTGGAGTGAAGGGCATAGGGAAAAAGAAGACTGATGAATCGGATCACTTTGTATGGCATGATGATATCAAAGTTCCTTGTGGACGATTAGTGCCTTCAGATAATAAAGACAGCATTGTCGAGTATAACGAGTATGCTGTCTATGATCCCAAGCAGACATGCATAACGTTCTTGGTGGGTGTGAAGTATGAAGAGAAGGATGCTATCATGGACGCCGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

791

Amino Acids

89.33

Weight (kDa)

5.26

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	38 - 84	1.2e-12	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	86 - 125	7.6e-14	PADR1 domain, zinc ribbon fold
BRCT	PF00533	162 - 239	1.6e-06	BRCA1 C Terminus (BRCT) domain
WGR	PF05406	311 - 389	1.1e-08	WGR domain
PARP_reg	PF02877	428 - 559	6.1e-24	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	575 - 778	6.7e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2264
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	1003
AccI	GTMKAC	2 cut(s)	301, 870
AccII	CGCG	1 cut(s)	7
AciI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
AclI	AACGTT	1 cut(s)	2315
AclWI	GGATC	8 cut(s)	356, 369, 800, 813, 1657, 1658, 2199, 2288
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	1306, 1877
AcuI	CTGAAG	4 cut(s)	681, 1274, 1766, 2229
AcyI	GRCGYC	1 cut(s)	2361
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	4 cut(s)	346, 932, 1028, 1751
AfiI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
AjnI	CCWGG	3 cut(s)	1563, 1752, 1966
AluBI	AGCT	5 cut(s)	101, 182, 850, 1261, 1905
AluI	AGCT	5 cut(s)	101, 182, 850, 1261, 1905
Alw21I	GWGCWC	1 cut(s)	1907
Alw26I	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
AlwI	GGATC	8 cut(s)	356, 369, 800, 813, 1657, 1658, 2199, 2288
AlwNI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
Ama87I	CYCGRG	1 cut(s)	1295
AoxI	GGCC	6 cut(s)	82, 251, 458, 520, 1475, 1541
ApeKI	GCWGC	7 cut(s)	212, 1271, 1528, 1583, 1586, 1589, 2018
ApoI	RAATTY	2 cut(s)	1306, 1877
ArsI	GACNNNNNNTTYG	2 cut(s)	1236, 1268
AseI	ATTAAT	1 cut(s)	1659
Asp700I	GAANNNNTTC	1 cut(s)	1817
AspS9I	GGNCC	5 cut(s)	251, 445, 459, 520, 1475
AsuHPI	GGTGA	1 cut(s)	2099
AvaI	CYCGRG	1 cut(s)	1295
AvaII	GGWCC	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	84
BamHI	GGATCC	2 cut(s)	361, 805
BanI	GGYRCC	1 cut(s)	1003
BanII	GRGCYC	1 cut(s)	1907
BauI	CACGAG	2 cut(s)	355, 480
BbsI	GAAGAC	2 cut(s)	1244, 2183
Bbv12I	GWGCWC	1 cut(s)	1907
BbvI	GCAGC	7 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 2005
BccI	CCATC	8 cut(s)	32, 770, 914, 1214, 1348, 1354, 1509, 1852
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	3 cut(s)	1565, 1754, 1968
BclI	TGATCA	2 cut(s)	73, 187
BcoDI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BfaI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
BfmI	CTRYAG	2 cut(s)	684, 887
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	2015
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	8 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 2010, 2019
BlsI	GCNGC	8 cut(s)	214, 1273, 1530, 1585, 1588, 1591, 2011, 2020
Bme1390I	CCNGG	3 cut(s)	1565, 1754, 1968
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	1295
BmgT120I	GGNCC	5 cut(s)	251, 445, 459, 520, 1475
BmiI	GGNNCC	4 cut(s)	363, 447, 807, 1005
BmrFI	CCNGG	3 cut(s)	1565, 1754, 1968
BmrI	ACTGGG	2 cut(s)	507, 804
BmsI	GCATC	8 cut(s)	199, 993, 1090, 1360, 1383, 1636, 1685, 2338
BmuI	ACTGGG	2 cut(s)	507, 804
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	1244, 2183
BpmI	CTGGAG	2 cut(s)	568, 1616
BpuEI	CTTGAG	2 cut(s)	425, 830
BsaHI	GRCGYC	1 cut(s)	2361
BsaJI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BsaWI	WCCGGW	2 cut(s)	317, 1139
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 1215, 1245
Bsc4I	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	5 cut(s)	502, 551, 660, 810, 1599
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	3 cut(s)	283, 672, 1279
BseBI	CCWGG	3 cut(s)	1565, 1754, 1968
BseDI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BseLI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
BseMI	GCAATG	3 cut(s)	283, 672, 1279
BseMII	CTCAG	6 cut(s)	12, 102, 219, 235, 387, 1476
BseNI	ACTGG	5 cut(s)	502, 551, 660, 810, 1599
BseXI	GCAGC	7 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 2005
BseYI	CCCAGC	2 cut(s)	732, 1261
BsgI	GTGCAG	2 cut(s)	1514, 1575
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BshNI	GGYRCC	1 cut(s)	1003
BsiHKAI	GWGCWC	1 cut(s)	1907
BsiHKCI	CYCGRG	1 cut(s)	1295
BsiSI	CCGG	3 cut(s)	318, 457, 1140
BslFI	GGGAC	4 cut(s)	809, 1622, 1909, 1949
BslI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
BsmAI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BsmFI	GGGAC	4 cut(s)	809, 1622, 1909, 1949
BsnI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BsoBI	CYCGRG	1 cut(s)	1295
Bsp1286I	GDGCHC	1 cut(s)	1907
Bsp1407I	TGTACA	1 cut(s)	930
Bsp19I	CCATGG	2 cut(s)	791, 1157
BspACI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
BspANI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BspCNI	CTCAG	6 cut(s)	13, 103, 218, 234, 388, 1477
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	363, 447, 807, 1005
BspMAI	CTGCAG	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	8 cut(s)	356, 369, 800, 813, 1657, 1658, 2199, 2288
BspT107I	GGYRCC	1 cut(s)	1003
BsrDI	GCAATG	3 cut(s)	283, 672, 1279
BsrFI	RCCGGY	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	5 cut(s)	502, 551, 660, 810, 1599
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	2361
BssSI	CACGAG	2 cut(s)	355, 480
BssT1I	CCWWGG	3 cut(s)	368, 791, 1157
Bst1107I	GTATAC	1 cut(s)	302
Bst2BI	CACGAG	2 cut(s)	355, 480
Bst2UI	CCWGG	3 cut(s)	1565, 1754, 1968
Bst4CI	ACNGT	4 cut(s)	126, 699, 938, 1603
Bst6I	CTCTTC	4 cut(s)	202, 810, 854, 2334
BstACI	GRCGYC	1 cut(s)	2361
BstAPI	GCANNNNNTGC	2 cut(s)	1580, 2018
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	2 cut(s)	458, 1944
BstDEI	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
BstDSI	CCRYGG	2 cut(s)	791, 1157
BstENI	CCTNNNNNAGG	1 cut(s)	1965
BstFNI	CGCG	1 cut(s)	7
BstMAI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
BstNI	CCWGG	3 cut(s)	1565, 1754, 1968
BstNSI	RCATGY	2 cut(s)	609, 2310
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	1563, 1752, 1966
BstSFI	CTRYAG	2 cut(s)	684, 887
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	7 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 2005
BstV2I	GAAGAC	2 cut(s)	1244, 2183
BstX2I	RGATCY	4 cut(s)	235, 361, 805, 1649
BstXI	CCANNNNNNTGG	2 cut(s)	92, 596
BstYI	RGATCY	4 cut(s)	235, 361, 805, 1649
BstZ17I	GTATAC	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BtgI	CCRYGG	2 cut(s)	791, 1157
BtsIMutI	CAGTG	4 cut(s)	495, 704, 817, 1592
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	458, 1944
CaiI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	5 cut(s)	251, 445, 459, 520, 1475
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	345, 931, 1027, 1750
CviQI	GTAC	4 cut(s)	345, 931, 1027, 1750
DdeI	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
DraIII	CACNNNGTG	1 cut(s)	953
DrdI	GACNNNNNNGTC	1 cut(s)	2264
DseDI	GACNNNNNNGTC	1 cut(s)	2264
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	4 cut(s)	202, 810, 854, 2334
EarI	CTCTTC	4 cut(s)	202, 810, 854, 2334
EciI	GGCGGA	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	1905
Eco130I	CCWWGG	3 cut(s)	368, 791, 1157
Eco147I	AGGCCT	1 cut(s)	1543
Eco24I	GRGCYC	1 cut(s)	1907
Eco32I	GATATC	2 cut(s)	1405, 2215
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	1905
Eco57I	CTGAAG	4 cut(s)	681, 1274, 1766, 2229
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	1295
EcoICRI	GAGCTC	1 cut(s)	1905
EcoNI	CCTNNNNNAGG	1 cut(s)	1965
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	3 cut(s)	1563, 1752, 1966
EcoRV	GATATC	2 cut(s)	1405, 2215
EcoT14I	CCWWGG	3 cut(s)	368, 791, 1157
EcoT22I	ATGCAT	1 cut(s)	2312
EcoT38I	GRGCYC	1 cut(s)	1907
ErhI	CCWWGG	3 cut(s)	368, 791, 1157
FalI	AAGNNNNNCTT	2 cut(s)	1922, 1954
FaqI	GGGAC	4 cut(s)	809, 1622, 1909, 1949
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	2 cut(s)	73, 187
FblI	GTMKAC	2 cut(s)	301, 870
Fnu4HI	GCNGC	8 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 2010, 2019
FriOI	GRGCYC	1 cut(s)	1907
Fsp4HI	GCNGC	8 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 2010, 2019
FspBI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
GluI	GCNGC	8 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 2010, 2019
GsaI	CCCAGC	2 cut(s)	736, 1265
GsuI	CTGGAG	2 cut(s)	568, 1616
HaeIII	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
HapII	CCGG	3 cut(s)	318, 457, 1140
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	2361
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	2 cut(s)	99, 848
HpaII	CCGG	3 cut(s)	318, 457, 1140
HphI	GGTGA	1 cut(s)	2099
Hpy166II	GTNNAC	7 cut(s)	153, 302, 695, 871, 1521, 2044, 2231
Hpy8I	GTNNAC	7 cut(s)	153, 302, 695, 871, 1521, 2044, 2231
HpyAV	CCTTC	8 cut(s)	10, 502, 952, 1309, 1459, 2152, 2253, 2338
HpyCH4III	ACNGT	4 cut(s)	126, 699, 938, 1603
HpyCH4IV	ACGT	2 cut(s)	949, 2315
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
HpyF3I	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
HpySE526I	ACGT	2 cut(s)	949, 2315
Hsp92I	GRCGYC	1 cut(s)	2361
KroI	GCCGGC	1 cut(s)	456
KroNI	GCCGGC	1 cut(s)	458
Ksp22I	TGATCA	2 cut(s)	73, 187
LmnI	GCTCC	3 cut(s)	775, 892, 1902
Lsp1109I	GCAGC	7 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 2005
LweI	GCATC	8 cut(s)	199, 993, 1090, 1360, 1383, 1636, 1685, 2338
MaeI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
MaeII	ACGT	2 cut(s)	949, 2315
MaeIII	GTNAC	4 cut(s)	390, 601, 828, 1135
MfeI	CAATTG	2 cut(s)	90, 1989
MflI	RGATCY	4 cut(s)	235, 361, 805, 1649
MhlI	GDGCHC	1 cut(s)	1907
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	4 cut(s)	188, 409, 836, 1490
MmeI	TCCRAC	3 cut(s)	1479, 1762, 2131
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	2312
MroNI	GCCGGC	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	1817
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	4 cut(s)	473, 506, 1194, 1659
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	1261
MspI	CCGG	3 cut(s)	318, 457, 1140
MspR9I	CCNGG	3 cut(s)	1565, 1754, 1968
MunI	CAATTG	2 cut(s)	90, 1989
MvaI	CCWGG	3 cut(s)	1565, 1754, 1968
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
NaeI	GCCGGC	1 cut(s)	458
NcoI	CCATGG	2 cut(s)	791, 1157
NdeI	CATATG	1 cut(s)	748
NgoMIV	GCCGGC	1 cut(s)	456
NlaIV	GGNNCC	4 cut(s)	363, 447, 807, 1005
NmuCI	GTSAC	2 cut(s)	601, 828
NsiI	ATGCAT	1 cut(s)	2312
NspI	RCATGY	2 cut(s)	609, 2310
PceI	AGGCCT	1 cut(s)	1543
PcsI	WCGNNNNNNNCGW	1 cut(s)	2274
PdiI	GCCGGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	1817
PfeI	GAWTC	6 cut(s)	786, 1469, 1721, 1741, 1829, 2186
PflFI	GACNNNGTC	1 cut(s)	1248
PfoI	TCCNGGA	1 cut(s)	1563
PkrI	GCNGC	8 cut(s)	214, 1273, 1530, 1585, 1588, 1591, 2011, 2020
PleI	GAGTC	4 cut(s)	188, 408, 835, 1489
PpsI	GAGTC	4 cut(s)	188, 408, 835, 1489
PpuMI	RGGWCCY	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	450
PshBI	ATTAAT	1 cut(s)	1659
Psp124BI	GAGCTC	1 cut(s)	1907
Psp1406I	AACGTT	1 cut(s)	2315
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	3 cut(s)	1563, 1752, 1966
PspFI	CCCAGC	2 cut(s)	732, 1261
PspGI	CCWGG	3 cut(s)	1563, 1752, 1966
PspN4I	GGNNCC	4 cut(s)	363, 447, 807, 1005
PspPI	GGNCC	5 cut(s)	251, 445, 459, 520, 1475
PspPPI	RGGWCCY	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	1013, 1045
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
PsuI	RGATCY	4 cut(s)	235, 361, 805, 1649
PsyI	GACNNNGTC	1 cut(s)	1248
PvuII	CAGCTG	1 cut(s)	1261
RsaI	GTAC	4 cut(s)	346, 932, 1028, 1751
RsaNI	GTAC	4 cut(s)	345, 931, 1027, 1750
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	1907
SaqAI	TTAA	4 cut(s)	473, 506, 1194, 1659
SatI	GCNGC	8 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 2010, 2019
Sau96I	GGNCC	5 cut(s)	251, 445, 459, 520, 1475
SchI	GAGTC	4 cut(s)	188, 409, 836, 1490
ScrFI	CCNGG	3 cut(s)	1565, 1754, 1968
SduI	GDGCHC	1 cut(s)	1907
SfaNI	GCATC	8 cut(s)	199, 993, 1090, 1360, 1383, 1636, 1685, 2338
SfcI	CTRYAG	2 cut(s)	684, 887
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	404, 845
SmoI	CTYRAG	2 cut(s)	404, 845
SseBI	AGGCCT	1 cut(s)	1543
SsiI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
SspI	AATATT	1 cut(s)	1125
SspMI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
SstI	GAGCTC	1 cut(s)	1907
StuI	AGGCCT	1 cut(s)	1543
StyD4I	CCNGG	3 cut(s)	1563, 1752, 1966
StyI	CCWWGG	3 cut(s)	368, 791, 1157
TaaI	ACNGT	4 cut(s)	126, 699, 938, 1603
TaiI	ACGT	2 cut(s)	952, 2318
TaqI	TCGA	4 cut(s)	741, 825, 1255, 2268
TatI	WGTACW	3 cut(s)	344, 930, 1026
TauI	GCSGC	1 cut(s)	2012
TfiI	GAWTC	6 cut(s)	786, 1469, 1721, 1741, 1829, 2186
Tru1I	TTAA	4 cut(s)	473, 506, 1194, 1659
Tru9I	TTAA	4 cut(s)	473, 506, 1194, 1659
TscAI	CASTG	4 cut(s)	502, 704, 817, 1599
TseFI	GTSAC	2 cut(s)	601, 828
TseI	GCWGC	7 cut(s)	212, 1271, 1528, 1583, 1586, 1589, 2018
Tsp45I	GTSAC	2 cut(s)	601, 828
TspDTI	ATGAA	8 cut(s)	765, 1328, 1478, 1537, 1782, 1869, 2199, 2352
TspGWI	ACGGA	1 cut(s)	1915
TspRI	CASTG	4 cut(s)	502, 704, 817, 1599
Tth111I	GACNNNGTC	1 cut(s)	1248
VpaK11BI	GGWCC	1 cut(s)	445
VspI	ATTAAT	1 cut(s)	1659
XagI	CCTNNNNNAGG	1 cut(s)	1965
XapI	RAATTY	2 cut(s)	1306, 1877
XceI	RCATGY	2 cut(s)	609, 2310
XmiI	GTMKAC	2 cut(s)	301, 870
XmnI	GAANNNNTTC	1 cut(s)	1817
XspI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
Zsp2I	ATGCAT	1 cut(s)	2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.