Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Reverse (-)

41365512 .. 41366865

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTGGAGCTACCATTGATGATCCCTTGTCCGATAGATGTAGCAAATTGGGATGCTCAATCTCCCCACTTGATAAGGAATCCGATGATTACAAAATGATTCTGAAGTACCTGGACAAGACCTATGAACCTGTCAAAGTTGGAGATATTGAATACGGGGTGTCTGTGGAGAACATATTCGTTGTTGAATCAAATGCCTGTCCATCTTTGGATGAAATAAAGAAGTTGCCTAACAAATTTCTCCTATGGTGTGGGACACGGAGCTCAAATCTGATGAGGCACTTGAATAAGGGTTTCTTGCCAGCAATATGCTCTCTCCCTGTCCCAGGCTATATGTTTGGGAAAGCAATTGTTTGCTCTGATACTGCCGCAGAGGCTGCAAGGTATGGTTATACTGCTGCGGACAGACCAGAGGGTTTCTTAGTTTTGGCTGTGGCTTCTCTAGGTGAAGAGATTATTGAGTTGAAAAACCCACCAGAGGACACAAAATCTTTAGAGGACAAGAAACTTGGAGTGAAGTGCATAGGGAAAAAGAAGACTGATGAATCGGAGCACTTTGTATGGCATGATGATATCAAAGTTCCTTGTGGACGATTAGTGCCTTCAGATAATAAAGACAGCATTGTCGAGTATAACGAGTATGCTGTCTATGATCCCAAGCAGACATGCATAAGGTTCTTGGTGGGTGTGAAGTATGAAGAGAAGGATGCTGTCATGGACACCGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

243

Amino Acids

27.08

Weight (kDa)

4.92

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	28 - 231	1.6e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	623
AciI	CCGC	2 cut(s)	369, 401
AclWI	GGATC	2 cut(s)	17, 647
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	125, 588
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	326, 478
AgsI	TTSAA	4 cut(s)	152, 188, 286, 466
AjnI	CCWGG	2 cut(s)	111, 325
AluBI	AGCT	2 cut(s)	11, 264
AluI	AGCT	2 cut(s)	11, 264
Alw21I	GWGCWC	2 cut(s)	266, 555
AlwI	GGATC	2 cut(s)	17, 647
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	377, 398
ApoI	RAATTY	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	266, 555
BbvI	GCAGC	2 cut(s)	364, 385
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	113, 327
BfaI	CTAG	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	369, 378, 399
BlsI	GCNGC	3 cut(s)	370, 379, 400
Bme1390I	CCNGG	2 cut(s)	113, 327
BmrFI	CCNGG	2 cut(s)	113, 327
BmsI	GCATC	2 cut(s)	44, 697
BpiI	GAAGAC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	325, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 478
BseBI	CCWGG	2 cut(s)	113, 327
BseDI	CCNNGG	2 cut(s)	325, 723
BseGI	GGATG	3 cut(s)	59, 217, 712
BseLI	CCNNNNNNNGG	2 cut(s)	326, 478
BseXI	GCAGC	2 cut(s)	364, 385
BsiHKAI	GWGCWC	2 cut(s)	266, 555
BslFI	GGGAC	2 cut(s)	268, 308
BslI	CCNNNNNNNGG	2 cut(s)	326, 478
BsmFI	GGGAC	2 cut(s)	268, 308
Bsp1286I	GDGCHC	2 cut(s)	266, 555
Bsp143I	GATC	2 cut(s)	22, 652
BspACI	CCGC	2 cut(s)	369, 401
BspPI	GGATC	2 cut(s)	17, 647
BssECI	CCNNGG	2 cut(s)	325, 723
BssMI	GATC	2 cut(s)	22, 652
Bst2UI	CCWGG	2 cut(s)	113, 327
Bst6I	CTCTTC	2 cut(s)	444, 693
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	59, 217, 712
BstKTI	GATC	2 cut(s)	25, 655
BstMBI	GATC	2 cut(s)	22, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 377
BstNI	CCWGG	2 cut(s)	113, 327
BstNSI	RCATGY	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	111, 325
BstV1I	GCAGC	2 cut(s)	364, 385
BstV2I	GAAGAC	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	59, 217, 712
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	3 cut(s)	566, 666, 715
CviJI	RGCY	6 cut(s)	11, 264, 330, 377, 431, 437
CviKI_1	RGCY	6 cut(s)	11, 264, 330, 377, 431, 437
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	24, 654
DpnII	GATC	2 cut(s)	22, 652
DrdI	GACNNNNNNGTC	1 cut(s)	623
DseDI	GACNNNNNNGTC	1 cut(s)	623
Eam1104I	CTCTTC	2 cut(s)	444, 693
EarI	CTCTTC	2 cut(s)	444, 693
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	574
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	125, 588
EcoICRI	GAGCTC	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	111, 325
EcoRV	GATATC	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	3 cut(s)	569, 669, 718
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	268, 308
FatI	CATG	3 cut(s)	565, 665, 714
Fnu4HI	GCNGC	3 cut(s)	369, 378, 399
FokI	GGATG	3 cut(s)	66, 224, 719
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	369, 378, 399
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	369, 378, 399
Hin1II	CATG	3 cut(s)	569, 669, 718
HinfI	GANTC	4 cut(s)	80, 100, 188, 545
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	7 cut(s)	34, 85, 105, 273, 361, 550, 607
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	612, 697
HpyCH4V	TGCA	3 cut(s)	380, 522, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 377
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	569, 669, 718
Kzo9I	GATC	2 cut(s)	22, 652
LmnI	GCTCC	3 cut(s)	8, 261, 550
Lsp1109I	GCAGC	2 cut(s)	364, 385
LweI	GCATC	2 cut(s)	44, 697
MaeI	CTAG	1 cut(s)	443
MalI	GATC	2 cut(s)	24, 654
MboI	GATC	2 cut(s)	22, 652
MboII	GAAGA	3 cut(s)	461, 547, 710
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	266, 555
MluCI	AATT	3 cut(s)	47, 236, 348
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	270, 367, 406, 472, 490, 718
Mph1103I	ATGCAT	1 cut(s)	671
MroXI	GAANNNNTTC	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	113, 327
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	113, 327
MwoI	GCNNNNNNNGC	2 cut(s)	374, 377
NdeII	GATC	2 cut(s)	22, 652
NlaIII	CATG	3 cut(s)	569, 669, 718
NsiI	ATGCAT	1 cut(s)	671
NspI	RCATGY	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	4 cut(s)	80, 100, 188, 545
PkrI	GCNGC	3 cut(s)	370, 379, 400
Psp124BI	GAGCTC	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	111, 325
PspGI	CCWGG	2 cut(s)	111, 325
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	266
SatI	GCNGC	3 cut(s)	369, 378, 399
Sau3AI	GATC	2 cut(s)	22, 652
ScrFI	CCNGG	2 cut(s)	113, 327
SduI	GDGCHC	2 cut(s)	266, 555
SetI	ASST	8 cut(s)	13, 114, 125, 133, 266, 386, 448, 677
SfaNI	GCATC	2 cut(s)	44, 697
Sse9I	AATT	3 cut(s)	47, 236, 348
SsiI	CCGC	2 cut(s)	369, 401
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	111, 325
TaqI	TCGA	1 cut(s)	627
TasI	AATT	3 cut(s)	47, 236, 348
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	4 cut(s)	80, 100, 188, 545
TseI	GCWGC	2 cut(s)	377, 398
TspDTI	ATGAA	4 cut(s)	141, 228, 558, 711
TspGWI	ACGGA	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.