Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007461

Physical Location & Seq

Genomic Coordinates Forward (+)

53722936 .. 53726799

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGACGCGGAAGCAGAAGGCTGAGAACAAGGGACATGATGGAGAGCAACCTCCAAAGAAGCCTAAGGCTGATGATCACAATGGCCATGCAAATGGTAAAGCTTTACCTGCTGAGTTTGAGGAACTGTATTCTGCTGTCAAAGAGCATTTGTCAACTGAACAAATGCGAGAAATCTTGGAAGCTAATGCTCAAGACTCTTCTGGCTCAGATGCTGCTGTTCTCAGAAAATGCCAAGATCTGCTATTCTATGGGCCATTAGATAGTTGTCGAATTTGCAATGGTAAATTAGAGTTCAATGGTATACGCTATTCTTGCACCGGAACTTATAGCGAGTGGGCTTCTTGTACTTTCAACACGAGGGATCCACCAAGGAAGCAGGAAGCGATCAAGTTACCTGAGAGTCTTGAGAAGTCTCCTGCTTCAGATTTGCTAAAGAAATATCGGGACCCAAGTCGCCGGCCCAAGAGGGATTTAACCACTCCTGATAAGCCCTTCACTGGGATGTTAATTTCTCTAATGGGCCGTCTTACTAGATCACATCAATACTGGAGACAGGAAGTAGATAAACATGGAGGAAAGGTTGCCAACCATGTGATTGGTGTGACATGCCTAATTGTGTCTCCTGCGGAACGAGAACGAGGTGGCACAAATAAACTGGCTGAAGCAATGGAGAGAGGGATACCTGTAGTAAGTGAACAGTGGCTGATTGATAGCATAGAAAAACAAGAACCCCAGCCTCTCGAAGCATATGAAATTACTAGTGATCTTGCTCCTGATGGCAGAGGAATCCCATGGGACAAAATGGATCCCAGTGAAGAGGCAATTGAGTCACTTTCAGCAGAACTCAAGCTTTATGGGAAGAGAGCTGTCTACAAAGATACGAAACTGCAGGAGCAAGGCGGAAAAATCTTCAAGAGGGATGGGATATTGTACAACTGTGCTTTCTCACGTTGTGATCTAGGACGAAAACTGAACGATTATTGCATCTTGCAACTGATTATGGTGGCAGAGAACAGCCTGAACTTGTACTACAAGAAAGGCAGAGTTGGGGATGACCCCAATGCGGAGGAAAGGCTTGAAGAATGGAAGAATGTGGATGATGCTGTGAAAGAGTTTGTTAGAATATTTGAGGAAGTAACTGGAAACGAGTTTGAACCATGGGAAAGAGAGAAGAAGATCCAGAAGAAGCCATTTAAGTTTTACCCAATAGACATGGACGATGGAGTTGAAGTAAGACATGGAGGACTTGGTCTTCAACAGCTGGGAGTTGCTGCTACACATTGCAAACTTCAGCCCGAGGTTGCGAATTTTATGAAGGTCTTATGCAGTCAGGAGATTTACAAATATGCTCTGATGGAGATGGGGTTGGATGCCCCAGACTTGCCAATGGGGATGCTTACCGATGTCCACCTAAAAAGATGTGAGGACGTTCTTCAAGAGTTTGTGGAGAAACTGAAGTCAATGACGGAATCAGGGCCAGAGTCTGAGGCTGTTTGGTCGGACTTTAGCCAAAGATGGTTTACCCTGCTGCACTCTACTAGGCCCTTCATATTCAGGAACTTCCAGGAAGTTGCAGATCATGCTGCTGCTGCACTGGAGACTGTTCGGGACATAACTCTGTCCTCACATCTTATTGGAGACATGAGTGGAGCTACGATTGATGATCCCTTGTCCGATAGATGTAGCAAATTGGGATGCTCAATCTCCCCACTTGATAAGGAATCCGATGATTACAAAATGATTCTGAAGTACCTGGACAAGACCTATGAACCTGTCAAAGTTGGAGATATTGAATACGGGGTGTCTGTGGAGAACATATTCGTTGTTGAATCAAATGCCTGTCCATCTTTGGATGAAATAAAGAAGCTGCCTAACAAATTTCTCCTATGGTGTGGGACACGGAGCTCAAATCTGATGAGGCACTTGAATAAGGGTTTCTTGCCAGCAATATGCTCTCTCCCTGTCCCAGGCTATATGTTTGGGAAAGCAATTGTTTGCTCTGATACTGCCGCAGAGGCTGCAAGGTATGGTTATACTGCTGTGGAAAGACCAGAGGGTTTCTTAGTTTTGGCTGTGGCTTCTCTAGGTGATGAGATTATTGAGTTGAAAAACCCACCAGAGGACACAAAATCTTTAGAGGACAAGAAAGTTGGAGTGAAGGGCATAGGGAAAAAGAAGACTGATGAATCGGAGCACTTTGTATGGCATGATGATATCAAAGTTCCTTGTGGACGATTAGTGCCTTCAGATAATAAAGACAGCATTGTCGAGTATAACGAGTATGCTGTCTATGATCCCAAGCAGACATGCATAAGGTTCCTGGTGGGTGTGAAGTATGAAGAGAAGGATGCTGTCATGGACACCGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT BRCT_2 PADR1 PARP PARP_reg WGR

Protein Analysis

790

Amino Acids

89.18

Weight (kDa)

5.32

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADR1_N	PF21728	38 - 84	1.3e-12	PADR1, N-terminal helical domain
Zn_ribbon_PADR1	PF08063	86 - 125	7.6e-14	PADR1 domain, zinc ribbon fold
BRCT	PF00533	161 - 239	1.8e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	165 - 251	1.5e-06	BRCT domain
WGR	PF05406	311 - 389	1.3e-08	WGR domain
PARP_reg	PF02877	428 - 559	1.1e-23	Poly(ADP-ribose) polymerase, regulatory domain
PARP	PF00644	575 - 778	2e-52	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22470
fragaria_vesca	FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670 FvH4_3g24670
malus_domestica	MD03G1142500.v1.1
prunus_persica	Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1 Prupe.6G127600_v2.0.a1
pyrus_communis	pycom03g09710
rosa_chinensis	RchiOBHm_Chr5g0044231
rosa_laevigata	RLG00000034257
rosa_multiflora	Rmu_sc0000776.1_g000071
rosa_roxburghii	Rroxscaffold_1G00036790
rosa_rugosa	Rorug05G0212700
rosa_samantha	Rh5AG296800 Rh5BG304300 Rh5CG331300 Rh5DG313100
rosa_wichuraiana	Rw5G027490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2264
Acc36I	ACCTGC	1 cut(s)	115
AccI	GTMKAC	2 cut(s)	301, 870
AccII	CGCG	1 cut(s)	7
AciI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
AclWI	GGATC	7 cut(s)	356, 369, 800, 813, 1171, 1658, 2288
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	3 cut(s)	270, 1306, 1877
AcuI	CTGAAG	6 cut(s)	405, 681, 1274, 1475, 1766, 2229
AdeI	CACNNNGTG	1 cut(s)	953
AfaI	GTAC	4 cut(s)	346, 932, 1028, 1751
AfiI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
AhlI	ACTAGT	1 cut(s)	758
AjnI	CCWGG	4 cut(s)	1563, 1752, 1966, 2319
AluBI	AGCT	8 cut(s)	101, 182, 850, 866, 1261, 1652, 1867, 1905
AluI	AGCT	8 cut(s)	101, 182, 850, 866, 1261, 1652, 1867, 1905
Alw21I	GWGCWC	2 cut(s)	1907, 2196
Alw26I	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
AlwI	GGATC	7 cut(s)	356, 369, 800, 813, 1171, 1658, 2288
AlwNI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
Ama87I	CYCGRG	1 cut(s)	1295
AoxI	GGCC	6 cut(s)	82, 251, 458, 520, 1475, 1541
ApeKI	GCWGC	8 cut(s)	212, 1271, 1528, 1583, 1586, 1589, 1867, 2018
ApoI	RAATTY	3 cut(s)	270, 1306, 1877
Asp700I	GAANNNNTTC	1 cut(s)	1817
AspS9I	GGNCC	6 cut(s)	251, 445, 459, 520, 1475, 1542
AsuHPI	GGTGA	1 cut(s)	2099
AvaI	CYCGRG	1 cut(s)	1295
AvaII	GGWCC	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	84
BamHI	GGATCC	2 cut(s)	361, 805
BanII	GRGCYC	1 cut(s)	1907
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	1244, 2183
Bbv12I	GWGCWC	2 cut(s)	1907, 2196
BbvI	GCAGC	8 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 1854, 2005
BccI	CCATC	8 cut(s)	32, 770, 914, 1214, 1348, 1354, 1509, 1852
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	4 cut(s)	1565, 1754, 1968, 2321
BciVI	GTATCC	1 cut(s)	672
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
BfmI	CTRYAG	2 cut(s)	684, 887
BfuAI	ACCTGC	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	672
BglI	GCCNNNNNGGC	1 cut(s)	2015
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	9 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 1868, 2010, 2019
BlsI	GCNGC	9 cut(s)	214, 1273, 1530, 1585, 1588, 1591, 1869, 2011, 2020
Bme1390I	CCNGG	4 cut(s)	1565, 1754, 1968, 2321
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	1295
BmgT120I	GGNCC	6 cut(s)	251, 445, 459, 520, 1475, 1542
BmiI	GGNNCC	5 cut(s)	363, 446, 447, 807, 2318
BmrFI	CCNGG	4 cut(s)	1565, 1754, 1968, 2321
BmrI	ACTGGG	2 cut(s)	507, 804
BmsI	GCATC	7 cut(s)	199, 993, 1090, 1360, 1383, 1685, 2338
BmuI	ACTGGG	2 cut(s)	507, 804
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	1244, 2183
BpmI	CTGGAG	2 cut(s)	568, 1616
BpuEI	CTTGAG	3 cut(s)	174, 425, 830
BsaJI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	6 cut(s)	564, 594, 1215, 1245, 1349, 1379
Bsc4I	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	6 cut(s)	502, 551, 660, 810, 1144, 1599
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	3 cut(s)	283, 672, 1279
BseBI	CCWGG	4 cut(s)	1565, 1754, 1968, 2321
BseDI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BseGI	GGATG	9 cut(s)	507, 925, 1057, 1102, 1375, 1398, 1700, 1858, 2353
BseLI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
BseMI	GCAATG	3 cut(s)	283, 672, 1279
BseMII	CTCAG	6 cut(s)	12, 102, 219, 235, 387, 1476
BseNI	ACTGG	6 cut(s)	502, 551, 660, 810, 1144, 1599
BseXI	GCAGC	8 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 1854, 2005
BseYI	CCCAGC	2 cut(s)	732, 1261
BsgI	GTGCAG	2 cut(s)	1514, 1575
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BsiHKAI	GWGCWC	2 cut(s)	1907, 2196
BsiHKCI	CYCGRG	1 cut(s)	1295
BsiSI	CCGG	2 cut(s)	318, 457
BslFI	GGGAC	6 cut(s)	45, 458, 809, 1622, 1909, 1949
BslI	CCNNNNNNNGG	5 cut(s)	497, 498, 1063, 1967, 2119
BsmAI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BsmFI	GGGAC	6 cut(s)	45, 458, 809, 1622, 1909, 1949
BsnI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BsoBI	CYCGRG	1 cut(s)	1295
Bsp1286I	GDGCHC	2 cut(s)	1907, 2196
Bsp1407I	TGTACA	1 cut(s)	930
Bsp19I	CCATGG	2 cut(s)	791, 1157
BspACI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
BspANI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BspCNI	CTCAG	6 cut(s)	13, 103, 218, 234, 388, 1477
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	5 cut(s)	363, 446, 447, 807, 2318
BspMAI	CTGCAG	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	7 cut(s)	356, 369, 800, 813, 1171, 1658, 2288
BsrDI	GCAATG	3 cut(s)	283, 672, 1279
BsrFI	RCCGGY	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	6 cut(s)	502, 551, 660, 810, 1144, 1599
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	6 cut(s)	368, 791, 1157, 1296, 1966, 2364
BssNAI	GTATAC	1 cut(s)	302
BssSI	CACGAG	1 cut(s)	355
BssT1I	CCWWGG	3 cut(s)	368, 791, 1157
Bst1107I	GTATAC	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	4 cut(s)	1565, 1754, 1968, 2321
Bst4CI	ACNGT	4 cut(s)	126, 699, 938, 1603
Bst6I	CTCTTC	4 cut(s)	202, 810, 854, 2334
BstAPI	GCANNNNNTGC	2 cut(s)	1580, 2018
BstAUI	TGTACA	1 cut(s)	930
BstC8I	GCNNGC	2 cut(s)	458, 1944
BstDEI	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
BstDSI	CCRYGG	2 cut(s)	791, 1157
BstENI	CCTNNNNNAGG	1 cut(s)	1965
BstF5I	GGATG	9 cut(s)	507, 925, 1057, 1102, 1375, 1398, 1700, 1858, 2353
BstFNI	CGCG	1 cut(s)	7
BstMAI	GTCTC	5 cut(s)	417, 544, 624, 1592, 1632
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
BstNI	CCWGG	4 cut(s)	1565, 1754, 1968, 2321
BstNSI	RCATGY	2 cut(s)	609, 2310
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	4 cut(s)	1563, 1752, 1966, 2319
BstSFI	CTRYAG	2 cut(s)	684, 887
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	8 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 1854, 2005
BstV2I	GAAGAC	2 cut(s)	1244, 2183
BstX2I	RGATCY	4 cut(s)	235, 361, 805, 1176
BstXI	CCANNNNNNTGG	2 cut(s)	92, 596
BstYI	RGATCY	4 cut(s)	235, 361, 805, 1176
BstZ17I	GTATAC	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	672
BsuRI	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
BtgI	CCRYGG	2 cut(s)	791, 1157
BtsCI	GGATG	9 cut(s)	507, 925, 1057, 1102, 1375, 1398, 1700, 1858, 2353
BtsIMutI	CAGTG	4 cut(s)	495, 704, 817, 1592
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	458, 1944
CaiI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	6 cut(s)	251, 445, 459, 520, 1475, 1542
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	345, 931, 1027, 1750
CviQI	GTAC	4 cut(s)	345, 931, 1027, 1750
DdeI	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
DraIII	CACNNNGTG	1 cut(s)	953
DrdI	GACNNNNNNGTC	1 cut(s)	2264
DseDI	GACNNNNNNGTC	1 cut(s)	2264
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	4 cut(s)	202, 810, 854, 2334
EarI	CTCTTC	4 cut(s)	202, 810, 854, 2334
EciI	GGCGGA	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	1905
Eco130I	CCWWGG	3 cut(s)	368, 791, 1157
Eco24I	GRGCYC	1 cut(s)	1907
Eco32I	GATATC	1 cut(s)	2215
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	1905
Eco57I	CTGAAG	6 cut(s)	405, 681, 1274, 1475, 1766, 2229
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	1295
EcoICRI	GAGCTC	1 cut(s)	1905
EcoNI	CCTNNNNNAGG	1 cut(s)	1965
EcoO109I	RGGNCCY	2 cut(s)	445, 1542
EcoRII	CCWGG	4 cut(s)	1563, 1752, 1966, 2319
EcoRV	GATATC	1 cut(s)	2215
EcoT14I	CCWWGG	3 cut(s)	368, 791, 1157
EcoT22I	ATGCAT	1 cut(s)	2312
EcoT38I	GRGCYC	1 cut(s)	1907
ErhI	CCWWGG	3 cut(s)	368, 791, 1157
FalI	AAGNNNNNCTT	2 cut(s)	1922, 1954
FaqI	GGGAC	6 cut(s)	45, 458, 809, 1622, 1909, 1949
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	2 cut(s)	301, 870
Fnu4HI	GCNGC	9 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 1868, 2010, 2019
FokI	GGATG	9 cut(s)	514, 932, 1064, 1109, 1382, 1405, 1707, 1865, 2360
FriOI	GRGCYC	1 cut(s)	1907
Fsp4HI	GCNGC	9 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 1868, 2010, 2019
FspBI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
GluI	GCNGC	9 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 1868, 2010, 2019
GsaI	CCCAGC	2 cut(s)	736, 1265
GsuI	CTGGAG	2 cut(s)	568, 1616
HaeIII	GGCC	6 cut(s)	84, 253, 460, 522, 1477, 1543
HapII	CCGG	2 cut(s)	318, 457
HgaI	GACGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	2 cut(s)	99, 848
HpaII	CCGG	2 cut(s)	318, 457
HphI	GGTGA	1 cut(s)	2099
Hpy166II	GTNNAC	7 cut(s)	153, 302, 695, 871, 1408, 1521, 2231
Hpy8I	GTNNAC	7 cut(s)	153, 302, 695, 871, 1408, 1521, 2231
HpyAV	CCTTC	7 cut(s)	10, 502, 1309, 1555, 2152, 2253, 2338
HpyCH4III	ACNGT	4 cut(s)	126, 699, 938, 1603
HpyCH4IV	ACGT	2 cut(s)	949, 1428
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
HpyF3I	CTNAG	8 cut(s)	21, 63, 111, 205, 221, 396, 1485, 2062
HpySE526I	ACGT	2 cut(s)	949, 1428
KflI	GGGWCCC	1 cut(s)	445
KroI	GCCGGC	1 cut(s)	456
KroNI	GCCGGC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	73
LmnI	GCTCC	5 cut(s)	775, 892, 1649, 1902, 2191
Lsp1109I	GCAGC	8 cut(s)	199, 1258, 1515, 1570, 1573, 1576, 1854, 2005
LweI	GCATC	7 cut(s)	199, 993, 1090, 1360, 1383, 1685, 2338
MaeI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
MaeII	ACGT	2 cut(s)	949, 1428
MaeIII	GTNAC	4 cut(s)	390, 601, 828, 1135
MfeI	CAATTG	2 cut(s)	822, 1989
MflI	RGATCY	4 cut(s)	235, 361, 805, 1176
MhlI	GDGCHC	2 cut(s)	1907, 2196
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	4 cut(s)	188, 409, 836, 1490
MmeI	TCCRAC	4 cut(s)	1347, 1479, 1762, 2131
Mox20I	TGGCCA	1 cut(s)	84
Mph1103I	ATGCAT	1 cut(s)	2312
MroNI	GCCGGC	1 cut(s)	456
MroXI	GAANNNNTTC	1 cut(s)	1817
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	3 cut(s)	473, 506, 1194
MslI	CAYNNNNRTG	2 cut(s)	90, 500
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	1261
MspI	CCGG	2 cut(s)	318, 457
MspR9I	CCNGG	4 cut(s)	1565, 1754, 1968, 2321
MunI	CAATTG	2 cut(s)	822, 1989
MvaI	CCWGG	4 cut(s)	1565, 1754, 1968, 2321
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	6 cut(s)	107, 312, 1580, 1589, 2015, 2018
NaeI	GCCGGC	1 cut(s)	458
NcoI	CCATGG	2 cut(s)	791, 1157
NdeI	CATATG	1 cut(s)	748
NgoMIV	GCCGGC	1 cut(s)	456
NlaIV	GGNNCC	5 cut(s)	363, 446, 447, 807, 2318
NmuCI	GTSAC	2 cut(s)	601, 828
NsiI	ATGCAT	1 cut(s)	2312
NspI	RCATGY	2 cut(s)	609, 2310
PcsI	WCGNNNNNNNCGW	1 cut(s)	2274
PdiI	GCCGGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	1817
PfeI	GAWTC	6 cut(s)	786, 1469, 1721, 1741, 1829, 2186
PflFI	GACNNNGTC	1 cut(s)	1248
PfoI	TCCNGGA	1 cut(s)	1563
PkrI	GCNGC	9 cut(s)	214, 1273, 1530, 1585, 1588, 1591, 1869, 2011, 2020
PleI	GAGTC	4 cut(s)	188, 408, 835, 1489
PpsI	GAGTC	4 cut(s)	188, 408, 835, 1489
PpuMI	RGGWCCY	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	1907
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	4 cut(s)	1563, 1752, 1966, 2319
PspFI	CCCAGC	2 cut(s)	732, 1261
PspGI	CCWGG	4 cut(s)	1563, 1752, 1966, 2319
PspN4I	GGNNCC	5 cut(s)	363, 446, 447, 807, 2318
PspPI	GGNCC	6 cut(s)	251, 445, 459, 520, 1475, 1542
PspPPI	RGGWCCY	1 cut(s)	445
PsrI	GAACNNNNNNTAC	2 cut(s)	1013, 1045
PstI	CTGCAG	1 cut(s)	891
PstNI	CAGNNNCTG	4 cut(s)	212, 703, 1484, 2018
PsuI	RGATCY	4 cut(s)	235, 361, 805, 1176
PsyI	GACNNNGTC	1 cut(s)	1248
PvuII	CAGCTG	1 cut(s)	1261
RsaI	GTAC	4 cut(s)	346, 932, 1028, 1751
RsaNI	GTAC	4 cut(s)	345, 931, 1027, 1750
RseI	CAYNNNNRTG	2 cut(s)	90, 500
SacI	GAGCTC	1 cut(s)	1907
SaqAI	TTAA	3 cut(s)	473, 506, 1194
SatI	GCNGC	9 cut(s)	213, 1272, 1529, 1584, 1587, 1590, 1868, 2010, 2019
Sau96I	GGNCC	6 cut(s)	251, 445, 459, 520, 1475, 1542
SchI	GAGTC	4 cut(s)	188, 409, 836, 1490
ScrFI	CCNGG	4 cut(s)	1565, 1754, 1968, 2321
SduI	GDGCHC	2 cut(s)	1907, 2196
SfaNI	GCATC	7 cut(s)	199, 993, 1090, 1360, 1383, 1685, 2338
SfcI	CTRYAG	2 cut(s)	684, 887
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	90, 500
SmlI	CTYRAG	3 cut(s)	189, 404, 845
SmoI	CTYRAG	3 cut(s)	189, 404, 845
SpeI	ACTAGT	1 cut(s)	758
SsiI	CCGC	5 cut(s)	7, 626, 900, 1064, 2010
SspI	AATATT	1 cut(s)	1125
SspMI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
SstI	GAGCTC	1 cut(s)	1907
StyD4I	CCNGG	4 cut(s)	1563, 1752, 1966, 2319
StyI	CCWWGG	3 cut(s)	368, 791, 1157
TaaI	ACNGT	4 cut(s)	126, 699, 938, 1603
TaiI	ACGT	2 cut(s)	952, 1431
TaqI	TCGA	3 cut(s)	268, 741, 2268
TatI	WGTACW	3 cut(s)	344, 930, 1026
TauI	GCSGC	1 cut(s)	2012
TfiI	GAWTC	6 cut(s)	786, 1469, 1721, 1741, 1829, 2186
Tru1I	TTAA	3 cut(s)	473, 506, 1194
Tru9I	TTAA	3 cut(s)	473, 506, 1194
TscAI	CASTG	4 cut(s)	502, 704, 817, 1599
TseFI	GTSAC	2 cut(s)	601, 828
TseI	GCWGC	8 cut(s)	212, 1271, 1528, 1583, 1586, 1589, 1867, 2018
Tsp45I	GTSAC	2 cut(s)	601, 828
TspDTI	ATGAA	7 cut(s)	765, 1328, 1537, 1782, 1869, 2199, 2352
TspGWI	ACGGA	2 cut(s)	1481, 1915
TspRI	CASTG	4 cut(s)	502, 704, 817, 1599
Tth111I	GACNNNGTC	1 cut(s)	1248
VpaK11BI	GGWCC	1 cut(s)	445
XagI	CCTNNNNNAGG	1 cut(s)	1965
XapI	RAATTY	3 cut(s)	270, 1306, 1877
XceI	RCATGY	2 cut(s)	609, 2310
XmiI	GTMKAC	2 cut(s)	301, 870
XmnI	GAANNNNTTC	1 cut(s)	1817
XspI	CTAG	5 cut(s)	531, 759, 959, 1539, 2084
Zsp2I	ATGCAT	1 cut(s)	2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.