MD03G1209600.v1.1

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0014590
Physical Location & Seq
Reverse (-)
28890946 .. 28892432
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1209600.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGCCAACCCCATTCACAAAAATAATATTAATGCAGTTTTTGTTCTGGGGATCGTATGTGTGATGCTGTTGATACAGAAGAGTGGTGCAACTGACTTTGCAATTGGAGGTTCAAAGGGTTGGAGTGTTCCAGATTCTTCTACTCACTATAGTCAATGGGCAGAAGGAAACAGGTTTCAAATCGGAGACTCCATTGTGTTCAACTACCCTCCTGGACAAGACTCAGTGCTTCGAGTAACCCAGGATGACTACAACAACTGCAACACTGATTCGCCTTCGGCCGAGAAATACTCTGATGGCCACACTGCCTTCCAGTTTAACCAATCTGGACCGTTCTATTTCATCAGTGGGAACAAAGACAACTGTCTCAAAAATGAGAAGGTGCTAGTGATTGTCTTGGCAGACAGAAGCAACAGAAATGCAACTCCTCCTTCACCTTCACCTTCAAACTCAACAGATATGACCCCATCTCCAGCTCCCTCTGGTGAAGCGTCTCCACCTCCAACTCCAGCTCCTGAAACACCTCCTCCACCTCCGAATGCGGCTTCTTCAATTTTCATGAGTTTTATTGGGTCCGTCGGGGCATTTGCTGCATCCTCAACACTTTTACTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

206

Amino Acids

21.72

Weight (kDa)

4.99

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 124 1e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20570
fragaria_vesca FvH4_3g21980
malus_domestica MD03G1209600.v1.1 MD11G1224400.v1.1
prunus_persica Prupe.4G205500_v2.0.a1
pyrus_communis pycom03g15840 pycom11g19810
rosa_chinensis RchiOBHm_Chr5g0037831
rosa_laevigata RLG00000033815
rosa_multiflora Rmu_sc0005416.1_g000014
rosa_roxburghii Rroxscaffold_1G00043090
rosa_rugosa Rorug05G0168000
rosa_samantha Rh5AG256800 Rh5BG259200 Rh5CG292200 Rh5DG269100
rosa_wichuraiana Rw5G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 542
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 3 cut(s) 3, 279, 298
AgsI TTSAA 5 cut(s) 114, 179, 202, 447, 552
AjnI CCWGG 2 cut(s) 211, 240
AluBI AGCT 2 cut(s) 476, 512
AluI AGCT 2 cut(s) 476, 512
Alw26I GTCTC 3 cut(s) 180, 371, 498
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 3 cut(s) 3, 279, 298
ApeKI GCWGC 1 cut(s) 590
AseI ATTAAT 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 329, 573
AsuHPI GGTGA 3 cut(s) 426, 432, 497
AvaII GGWCC 2 cut(s) 329, 573
BalI TGGCCA 2 cut(s) 5, 300
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 290, 475
BciT130I CCWGG 2 cut(s) 213, 242
BcoDI GTCTC 3 cut(s) 180, 371, 498
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 2 cut(s) 543, 591
BlsI GCNGC 2 cut(s) 544, 592
Bme1390I CCNGG 2 cut(s) 213, 242
Bme18I GGWCC 2 cut(s) 329, 573
BmgT120I GGNCC 2 cut(s) 329, 573
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 2 cut(s) 213, 242
BmsI GCATC 2 cut(s) 54, 602
BoxI GACNNNNGTC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 2 cut(s) 456, 492
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 6 cut(s) 454, 484, 496, 511, 526, 541
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 213, 242
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 250, 593
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 417, 516
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 5, 281, 300
BsiEI CGRYCG 1 cut(s) 282
BsmAI GTCTC 3 cut(s) 180, 371, 498
BsmBI CGTCTC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 3 cut(s) 5, 281, 300
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 542
BspANI GGCC 3 cut(s) 5, 281, 300
BspCNI CTCAG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 574
BspPI GGATC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 213, 242
Bst4CI ACNGT 2 cut(s) 333, 365
Bst6I CTCTTC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 590
BstDEI CTNAG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 250, 593
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 3 cut(s) 180, 371, 498
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 2 cut(s) 213, 242
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 211, 240
BstSFI CTRYAG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 577
BstZI CGGCCG 1 cut(s) 279
BsuRI GGCC 3 cut(s) 5, 281, 300
BtsCI GGATG 2 cut(s) 250, 593
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 4 cut(s) 231, 264, 303, 352
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 2 cut(s) 329, 573
CseI GACGC 1 cut(s) 480
CviAII CATG 1 cut(s) 559
CviJI RGCY 6 cut(s) 5, 281, 300, 476, 512, 545
CviKI_1 RGCY 6 cut(s) 5, 281, 300, 476, 512, 545
DdeI CTNAG 1 cut(s) 223
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 3 cut(s) 3, 279, 298
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EclXI CGGCCG 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 329, 573
Eco52I CGGCCG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 211, 240
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 1 cut(s) 562
FaiI YATR 4 cut(s) 58, 150, 461, 560
FatI CATG 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 543, 591
FokI GGATG 2 cut(s) 257, 580
Fsp4HI GCNGC 2 cut(s) 543, 591
FspBI CTAG 1 cut(s) 386
GluI GCNGC 2 cut(s) 543, 591
GsuI CTGGAG 2 cut(s) 456, 492
HaeIII GGCC 3 cut(s) 5, 281, 300
HgaI GACGC 1 cut(s) 480
Hin1II CATG 1 cut(s) 562
HinfI GANTC 4 cut(s) 134, 188, 221, 269
HphI GGTGA 3 cut(s) 426, 432, 497
Hpy188I TCNGA 3 cut(s) 185, 295, 537
Hpy188III TCNNGA 4 cut(s) 131, 327, 515, 559
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 7 cut(s) 158, 285, 319, 373, 441, 447, 453
HpyCH4III ACNGT 2 cut(s) 333, 365
HpyCH4V TGCA 6 cut(s) 35, 89, 101, 261, 422, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 1 cut(s) 223
Hsp92II CATG 1 cut(s) 562
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 481, 517
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 2 cut(s) 54, 602
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 3 cut(s) 91, 129, 540
MfeI CAATTG 1 cut(s) 102
MlsI TGGCCA 2 cut(s) 5, 300
MluCI AATT 2 cut(s) 102, 552
MluNI TGGCCA 2 cut(s) 5, 300
MlyI GAGTC 2 cut(s) 182, 215
MmeI TCCRAC 2 cut(s) 101, 527
MnlI CCTC 9 cut(s) 101, 219, 438, 490, 510, 534, 537, 543, 607
Mox20I TGGCCA 2 cut(s) 5, 300
MscI TGGCCA 2 cut(s) 5, 300
MseI TTAA 2 cut(s) 30, 318
Msp20I TGGCCA 2 cut(s) 5, 300
MspR9I CCNGG 2 cut(s) 213, 242
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 2 cut(s) 213, 242
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 574
NmeAIII GCCGAG 1 cut(s) 307
PagI TCATGA 1 cut(s) 558
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 2 cut(s) 134, 269
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 2 cut(s) 544, 592
PleI GAGTC 2 cut(s) 182, 215
PpsI GAGTC 2 cut(s) 182, 215
PshAI GACNNNNGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 211, 240
PspGI CCWGG 2 cut(s) 211, 240
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 329, 573
PstNI CAGNNNCTG 1 cut(s) 515
SaqAI TTAA 2 cut(s) 30, 318
SatI GCNGC 2 cut(s) 543, 591
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 2 cut(s) 329, 573
SchI GAGTC 2 cut(s) 182, 215
ScrFI CCNGG 2 cut(s) 213, 242
SfaNI GCATC 2 cut(s) 54, 602
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 2 cut(s) 329, 573
Sse9I AATT 2 cut(s) 102, 552
SsiI CCGC 1 cut(s) 542
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 211, 240
TaaI ACNGT 2 cut(s) 333, 365
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 102, 552
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 134, 269
Tru1I TTAA 2 cut(s) 30, 318
Tru9I TTAA 2 cut(s) 30, 318
TscAI CASTG 4 cut(s) 231, 271, 310, 352
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 331, 547
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 4 cut(s) 231, 271, 310, 352
VpaK11BI GGWCC 2 cut(s) 329, 573
VspI ATTAAT 1 cut(s) 30
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.