RchiOBHm_Chr5g0037831

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014590
Physical Location & Seq
Forward (+)
32462074 .. 32463523
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31651

Sequence Viewer

Length: 618 bp
ATGGCCAACTCTAATATTCTAAGAGTATATAACAAAAGCATTGCATTTCCTGTATTGGGTCTTCTTTGTCTATCGCTGTTACTGCAGAAGAGTGGTGCAAATGAGTTTACAATAGCTTGGACTGTTCCTGATGCATCAACTCATTTTAGTCAATGGGCAGAGACCAACAGATTTCAAATTGGTGACTCCTTAGTGTTCAACTATTCTCCTGGCCAAGACTCAGTGCTTCGCGTCGGCCAGGATGACTACACAAATTGCAATACTGATGCTCCAACAGCTGAGAAATATACCGATGGCCACTCTACGTACAAGTTCAACCAATCTGGGCCATTCTACTTCATGAGTGGGAACAAAGATAACTGTCTCAAAAATGAGAAGATGGTTGTGATTGTCTTGGCAGACAGGAACCAAACAAGCAATGCAACTCCATCTCCTGCACCTTCTGGCGAAGCGTCTCCACCTCCCCCTTCACCAGGGACGGTCCAGATTAACCCGACTCCAGCTCCCGAAAGTGATCACATGCCGCCTCCACCTCCTAGCGGTGCTTCTTCAATTTTCATCAGTTTAGTTGGAACCATTGGAGCAGTTGCTGCGTATTCATCATTTTTATTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

205

Amino Acids

21.98

Weight (kDa)

5.01

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 123 5e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20570
fragaria_vesca FvH4_3g21980
malus_domestica MD03G1209600.v1.1 MD11G1224400.v1.1
prunus_persica Prupe.4G205500_v2.0.a1
pyrus_communis pycom03g15840 pycom11g19810
rosa_chinensis RchiOBHm_Chr5g0037831
rosa_laevigata RLG00000033815
rosa_multiflora Rmu_sc0005416.1_g000014
rosa_roxburghii Rroxscaffold_1G00043090
rosa_rugosa Rorug05G0168000
rosa_samantha Rh5AG256800 Rh5BG259200 Rh5CG292200 Rh5DG269100
rosa_wichuraiana Rw5G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 524, 540
AcoI YGGCCR 4 cut(s) 3, 211, 235, 295
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 56, 473, 539
AgsI TTSAA 4 cut(s) 176, 199, 316, 552
AjnI CCWGG 3 cut(s) 208, 237, 472
AluBI AGCT 3 cut(s) 116, 278, 503
AluI AGCT 3 cut(s) 116, 278, 503
Alw26I GTCTC 3 cut(s) 155, 368, 459
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 5 cut(s) 3, 211, 235, 295, 326
ApeKI GCWGC 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 326, 481
AsuHPI GGTGA 2 cut(s) 194, 462
AvaII GGWCC 1 cut(s) 481
BalI TGGCCA 3 cut(s) 5, 213, 297
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 577
BccI CCATC 3 cut(s) 287, 373, 436
BciT130I CCWGG 3 cut(s) 210, 239, 474
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 155, 368, 459
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 524, 591
BlsI GCNGC 2 cut(s) 525, 592
Bme1390I CCNGG 3 cut(s) 210, 239, 474
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 326, 481
BmiI GGNNCC 2 cut(s) 407, 574
BmrFI CCNGG 3 cut(s) 210, 239, 474
BmsI GCATC 3 cut(s) 121, 143, 256
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 473
BsaXI ACNNNNNCTCC 6 cut(s) 253, 283, 415, 445, 487, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 473, 539
Bse3DI GCAATG 2 cut(s) 39, 424
BseBI CCWGG 3 cut(s) 210, 239, 474
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 56, 473, 539
BseMI GCAATG 2 cut(s) 39, 424
BseMII CTCAG 2 cut(s) 234, 270
BseXI GCAGC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 5 cut(s) 5, 213, 237, 297, 328
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 56, 473, 539
BsmAI GTCTC 3 cut(s) 155, 368, 459
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 5 cut(s) 5, 213, 237, 297, 328
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 514
BspACI CCGC 2 cut(s) 524, 540
BspANI GGCC 5 cut(s) 5, 213, 237, 297, 328
BspCNI CTCAG 2 cut(s) 233, 271
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 407, 574
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 39, 424
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 1 cut(s) 514
Bst2UI CCWGG 3 cut(s) 210, 239, 474
Bst4CI ACNGT 3 cut(s) 124, 362, 481
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 20, 190, 220, 279
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 3 cut(s) 155, 368, 459
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 3 cut(s) 82, 275, 590
BstNI CCWGG 3 cut(s) 210, 239, 474
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 3 cut(s) 208, 237, 472
BstSFI CTRYAG 1 cut(s) 83
BstSNI TACGTA 1 cut(s) 306
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 577
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 5 cut(s) 5, 213, 237, 297, 328
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 326, 481
CseI GACGC 2 cut(s) 220, 441
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 340, 520
CviJI RGCY 8 cut(s) 5, 116, 213, 237, 278, 297, 328, 503
CviKI_1 RGCY 8 cut(s) 5, 116, 213, 237, 278, 297, 328, 503
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 20, 190, 220, 279
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
EaeI YGGCCR 4 cut(s) 3, 211, 235, 295
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco105I TACGTA 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRII CCWGG 3 cut(s) 208, 237, 472
EcoT22I ATGCAT 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 2 cut(s) 343, 523
FaiI YATR 5 cut(s) 28, 30, 288, 341, 521
FaqI GGGAC 1 cut(s) 490
FatI CATG 2 cut(s) 339, 519
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 524, 591
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 524, 591
FspBI CTAG 1 cut(s) 537
GluI GCNGC 2 cut(s) 524, 591
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 5 cut(s) 5, 213, 237, 297, 328
HgaI GACGC 2 cut(s) 220, 441
Hin1II CATG 2 cut(s) 343, 523
HinfI GANTC 3 cut(s) 185, 218, 496
HphI GGTGA 2 cut(s) 194, 462
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 4 cut(s) 128, 340, 484, 506
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 450, 477
HpyCH4III ACNGT 3 cut(s) 124, 362, 481
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 44, 85, 98, 134, 258, 422, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 275, 590
HpyF3I CTNAG 4 cut(s) 20, 190, 220, 279
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 343, 523
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 1 cut(s) 514
LmnI GCTCC 3 cut(s) 274, 508, 581
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 3 cut(s) 121, 143, 256
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 78, 182
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 4 cut(s) 53, 100, 388, 540
MlsI TGGCCA 3 cut(s) 5, 213, 297
MluCI AATT 3 cut(s) 177, 253, 552
MluNI TGGCCA 3 cut(s) 5, 213, 297
MlyI GAGTC 3 cut(s) 179, 212, 490
MmeI TCCRAC 2 cut(s) 296, 550
MnlI CCTC 3 cut(s) 471, 537, 543
Mox20I TGGCCA 3 cut(s) 5, 213, 297
Mph1103I ATGCAT 1 cut(s) 136
MscI TGGCCA 3 cut(s) 5, 213, 297
MseI TTAA 1 cut(s) 489
Msp20I TGGCCA 3 cut(s) 5, 213, 297
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 3 cut(s) 210, 239, 474
MvaI CCWGG 3 cut(s) 210, 239, 474
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 82, 275, 590
NdeII GATC 1 cut(s) 514
NlaIII CATG 2 cut(s) 343, 523
NlaIV GGNNCC 2 cut(s) 407, 574
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 523
PagI TCATGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 525, 592
PleI GAGTC 3 cut(s) 179, 212, 490
PpsI GAGTC 3 cut(s) 179, 212, 490
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 208, 237, 472
PspGI CCWGG 3 cut(s) 208, 237, 472
PspN4I GGNNCC 2 cut(s) 407, 574
PspPI GGNCC 2 cut(s) 326, 481
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 524, 591
Sau3AI GATC 1 cut(s) 514
Sau96I GGNCC 2 cut(s) 326, 481
SchI GAGTC 3 cut(s) 179, 212, 490
ScrFI CCNGG 3 cut(s) 210, 239, 474
SetI ASST 7 cut(s) 118, 280, 308, 442, 463, 505, 535
SfaNI GCATC 3 cut(s) 121, 143, 256
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 481
SnaBI TACGTA 1 cut(s) 306
Sse9I AATT 3 cut(s) 177, 253, 552
SsiI CCGC 2 cut(s) 524, 540
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 3 cut(s) 208, 237, 472
TaaI ACNGT 3 cut(s) 124, 362, 481
TaiI ACGT 1 cut(s) 308
TasI AATT 3 cut(s) 177, 253, 552
TauI GCSGC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 328, 547, 588
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 481
XagI CCTNNNNNAGG 1 cut(s) 471
XceI RCATGY 1 cut(s) 523
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.