Rroxscaffold_1G00043090

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014590
Physical Location & Seq
Reverse (-)
61402789 .. 61404213
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043090.1

Sequence Viewer

Length: 567 bp
ATGGCCAACTCTAACATTCTAAGAGCATATAACAAAAGCATTGCATTTCCTGTATTGGGTCTTCTTTGTCTATCGCTGTTACTGCAGAAGAGTGGTGCAAATGAGTTTACAATAGCTTGGACTGTTCCTGATGCATCAACTCATTTTAGTCAATGGGCAGAGACCAACAGATTTCAAATTGGTGACTCCCTAGTGTTCAACTATTCTCCTGGCCAAGACTCAGTGCTTCGCGTCAGCCAGGATGACTACACAAATTGCAATACTGATGCTCCAGCTGAGAAATATACCGATGGCCACTCGACCTACACGTTCAACCAGTCTGGGCCATTCTACTTCATGAGCGGGAACAAAGATAACTGTCTCAAAAATGAGAAGATGGTTGTGATTGTCTTGGCAGACAGGAACCAAACAAGCAATGCAACTACTCCATCTCCTGCCCCTTCTGGCGAAGCCTCTCCACCTCCCCTTCACCAGGAACGCTCCAGATTAACCCGACTCCAGCTCCGGAAAGTGATCAAATCCCTCCTCCTCCTCCTAGCGGTGCTTCTTCAATTTTCATCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

7.72

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 122 5.7e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20570
fragaria_vesca FvH4_3g21980
malus_domestica MD03G1209600.v1.1 MD11G1224400.v1.1
prunus_persica Prupe.4G205500_v2.0.a1
pyrus_communis pycom03g15840 pycom11g19810
rosa_chinensis RchiOBHm_Chr5g0037831
rosa_laevigata RLG00000033815
rosa_multiflora Rmu_sc0005416.1_g000014
rosa_roxburghii Rroxscaffold_1G00043090
rosa_rugosa Rorug05G0168000
rosa_samantha Rh5AG256800 Rh5BG259200 Rh5CG292200 Rh5DG269100
rosa_wichuraiana Rw5G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 504
AciI CCGC 2 cut(s) 342, 539
AcoI YGGCCR 3 cut(s) 3, 211, 292
AfiI CCNNNNNNNGG 3 cut(s) 56, 472, 538
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 176, 199, 313, 551
AjnI CCWGG 3 cut(s) 208, 237, 471
AluBI AGCT 3 cut(s) 116, 275, 502
AluI AGCT 3 cut(s) 116, 275, 502
Alw26I GTCTC 2 cut(s) 155, 365
Aor13HI TCCGGA 1 cut(s) 504
AoxI GGCC 4 cut(s) 3, 211, 292, 323
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 194, 461
BalI TGGCCA 3 cut(s) 5, 213, 294
BarI GAAGNNNNNNTAC 2 cut(s) 45, 77
BbsI GAAGAC 1 cut(s) 53
BccI CCATC 3 cut(s) 284, 370, 436
BciT130I CCWGG 3 cut(s) 210, 239, 473
BclI TGATCA 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 155, 365
BfaI CTAG 2 cut(s) 191, 536
BfmI CTRYAG 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 210, 239, 473
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 3 cut(s) 210, 239, 473
BmsI GCATC 3 cut(s) 121, 143, 256
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 3 cut(s) 255, 466, 482
BsaI GGTCTC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 6 cut(s) 253, 283, 415, 445, 486, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 472, 538
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 39, 421
BseAI TCCGGA 1 cut(s) 504
BseBI CCWGG 3 cut(s) 210, 239, 473
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 56, 472, 538
BseMI GCAATG 2 cut(s) 39, 421
BseMII CTCAG 2 cut(s) 234, 267
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 3 cut(s) 515, 518, 521
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 5, 213, 294, 325
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 3 cut(s) 56, 472, 538
BsmAI GTCTC 2 cut(s) 155, 365
BsnI GGCC 4 cut(s) 5, 213, 294, 325
Bso31I GGTCTC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 1 cut(s) 513
BspACI CCGC 2 cut(s) 342, 539
BspANI GGCC 4 cut(s) 5, 213, 294, 325
BspCNI CTCAG 2 cut(s) 233, 268
BspEI TCCGGA 1 cut(s) 504
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 404
BspMAI CTGCAG 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 2 cut(s) 39, 421
BsrI ACTGG 1 cut(s) 316
BssMI GATC 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 210, 239, 473
Bst4CI ACNGT 2 cut(s) 124, 359
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 20, 220, 276
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 516
BstMAI GTCTC 2 cut(s) 155, 365
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 3 cut(s) 210, 239, 473
BstSCI CCNGG 3 cut(s) 208, 237, 471
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 4 cut(s) 5, 213, 294, 325
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 228
CciI TCATGA 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 220
CviAII CATG 1 cut(s) 337
CviJI RGCY 9 cut(s) 5, 116, 213, 237, 275, 294, 325, 452, 502
CviKI_1 RGCY 9 cut(s) 5, 116, 213, 237, 275, 294, 325, 452, 502
DdeI CTNAG 3 cut(s) 20, 220, 276
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
EaeI YGGCCR 3 cut(s) 3, 211, 292
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 208, 237, 471
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 1 cut(s) 340
FaiI YATR 4 cut(s) 28, 30, 285, 338
FatI CATG 1 cut(s) 336
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 513
FokI GGATG 1 cut(s) 254
FspBI CTAG 2 cut(s) 191, 536
GsuI CTGGAG 3 cut(s) 255, 466, 482
HaeIII GGCC 4 cut(s) 5, 213, 294, 325
HapII CCGG 1 cut(s) 505
HgaI GACGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 340
HinfI GANTC 3 cut(s) 185, 218, 495
HpaII CCGG 1 cut(s) 505
HphI GGTGA 2 cut(s) 194, 461
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 4 cut(s) 128, 337, 483, 505
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 450, 476
HpyCH4III ACNGT 2 cut(s) 124, 359
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 44, 85, 98, 134, 258, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 3 cut(s) 20, 220, 276
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 340
Kpn2I TCCGGA 1 cut(s) 504
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 1 cut(s) 513
LmnI GCTCC 3 cut(s) 274, 485, 507
LweI GCATC 3 cut(s) 121, 143, 256
MaeI CTAG 2 cut(s) 191, 536
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 78, 182
MalI GATC 1 cut(s) 515
MbiI CCGCTC 1 cut(s) 342
MboI GATC 1 cut(s) 513
MboII GAAGA 4 cut(s) 53, 100, 385, 539
MlsI TGGCCA 3 cut(s) 5, 213, 294
MluCI AATT 3 cut(s) 177, 253, 551
MluNI TGGCCA 3 cut(s) 5, 213, 294
MlyI GAGTC 3 cut(s) 179, 212, 489
MnlI CCTC 6 cut(s) 463, 471, 533, 536, 539, 542
Mox20I TGGCCA 3 cut(s) 5, 213, 294
Mph1103I ATGCAT 1 cut(s) 136
MroI TCCGGA 1 cut(s) 504
MscI TGGCCA 3 cut(s) 5, 213, 294
MseI TTAA 2 cut(s) 488, 565
Msp20I TGGCCA 3 cut(s) 5, 213, 294
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 3 cut(s) 210, 239, 473
MvaI CCWGG 3 cut(s) 210, 239, 473
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeII GATC 1 cut(s) 513
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 136
PagI TCATGA 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PleI GAGTC 3 cut(s) 179, 212, 489
PpsI GAGTC 3 cut(s) 179, 212, 489
Psp6I CCWGG 3 cut(s) 208, 237, 471
PspGI CCWGG 3 cut(s) 208, 237, 471
PspN4I GGNNCC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 275
SaqAI TTAA 2 cut(s) 488, 565
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 3 cut(s) 179, 212, 489
ScrFI CCNGG 3 cut(s) 210, 239, 473
SetI ASST 6 cut(s) 118, 277, 305, 311, 463, 504
SfaNI GCATC 3 cut(s) 121, 143, 256
SfcI CTRYAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 177, 253, 551
SsiI CCGC 2 cut(s) 342, 539
SspMI CTAG 2 cut(s) 191, 536
StyD4I CCNGG 3 cut(s) 208, 237, 471
TaaI ACNGT 2 cut(s) 124, 359
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 299
TasI AATT 3 cut(s) 177, 253, 551
Tru1I TTAA 2 cut(s) 488, 565
Tru9I TTAA 2 cut(s) 488, 565
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 325, 546
TspRI CASTG 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 470
XspI CTAG 2 cut(s) 191, 536
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.