Prupe.4G205500_v2.0.a1

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014590
Physical Location & Seq
Forward (+)
12815777 .. 12817225
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G205500.1

Sequence Viewer

Length: 633 bp
ATGGCTAGCCCCATTCTAAGATTCAATCACAAGAGCAATGTTGTATTTTCTGTGATGGTGCTTCTATGCGTCACACTGTTGATACAGAAGAGTGGTGCAGCTGAGTTTGCAATAAGTTGGAGTGCTCCGAATGCCTCTGCGCCTCACTTTGATCAATGGGCTGAAAATAACAGATTTCAAGTTGGAGACTCCATAGTTTTCAACTACTCTCCTGGCCAAGACTCAGTGCTTAGAGTAAACCAGGACGACTATGCAAATTGCAACACCGATGCCCCTTCTGCGAAATATACTGATGGCCACACTGCCATCAAGTTCGACCAATCTGGGCCATTTTATTTCATCAGTGGCAACAAAGACAACTGTCTCAAAAATGAGAAGGTGGTAGTGATTGTGTTGGCAGATAGAACCAATAGAAATGCAACTGCCCCTTCGCCTTCAAACTCAACTGATATAACCCCATCTCCAGCTCCTGCCGGTGAAGCGTCTCCACCTTCACCGGATACAGGGGTGGTCGAGAACCCTACTCCAGCTCCCGAAAGCCCTCCACCGCCCAGCGGGGCTTCTCCAGTTTTCATGAGTTTGTTGGGGTCCATTGGAGCTTTTGCTGCATCCTCATCACTTTTACTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

211

Amino Acids

22.15

Weight (kDa)

4.88

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20570
fragaria_vesca FvH4_3g21980
malus_domestica MD03G1209600.v1.1 MD11G1224400.v1.1
prunus_persica Prupe.4G205500_v2.0.a1
pyrus_communis pycom03g15840 pycom11g19810
rosa_chinensis RchiOBHm_Chr5g0037831
rosa_laevigata RLG00000033815
rosa_multiflora Rmu_sc0005416.1_g000014
rosa_roxburghii Rroxscaffold_1G00043090
rosa_rugosa Rorug05G0168000
rosa_samantha Rh5AG256800 Rh5BG259200 Rh5CG292200 Rh5DG269100
rosa_wichuraiana Rw5G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 548, 555
AcoI YGGCCR 2 cut(s) 214, 295
AfiI CCNNNNNNNGG 2 cut(s) 503, 554
AgsI TTSAA 4 cut(s) 25, 179, 202, 438
AjnI CCWGG 2 cut(s) 211, 240
AluBI AGCT 4 cut(s) 101, 467, 530, 599
AluI AGCT 4 cut(s) 101, 467, 530, 599
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 3 cut(s) 180, 368, 489
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 3 cut(s) 214, 295, 326
ApeKI GCWGC 2 cut(s) 98, 605
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 326, 588
AsuHPI GGTGA 2 cut(s) 486, 488
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 588
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 2 cut(s) 216, 297
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 110, 592
BccI CCATC 4 cut(s) 49, 287, 314, 466
BciT130I CCWGG 2 cut(s) 213, 242
BciVI GTATCC 1 cut(s) 493
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 3 cut(s) 180, 368, 489
BfaI CTAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 2 cut(s) 99, 606
BlsI GCNGC 2 cut(s) 100, 607
Bme1390I CCNGG 2 cut(s) 213, 242
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 2 cut(s) 326, 588
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 213, 242
BmsI GCATC 2 cut(s) 259, 617
BmtI GCTAGC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 360
BpmI CTGGAG 3 cut(s) 447, 510, 549
BsaWI WCCGGW 1 cut(s) 496
BsaXI ACNNNNNCTCC 4 cut(s) 445, 475, 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 554
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 213, 242
BseGI GGATG 1 cut(s) 608
BseLI CCNNNNNNNGG 2 cut(s) 503, 554
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 93, 237
BseNI ACTGG 1 cut(s) 566
BseXI GCAGC 2 cut(s) 110, 592
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 3 cut(s) 216, 297, 328
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 474, 497
BslI CCNNNNNNNGG 2 cut(s) 503, 554
BsmAI GTCTC 3 cut(s) 180, 368, 489
BsmBI CGTCTC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 3 cut(s) 216, 297, 328
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 2 cut(s) 548, 555
BspANI GGCC 3 cut(s) 216, 297, 328
BspCNI CTCAG 2 cut(s) 94, 236
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 589
BspOI GCTAGC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 473
BssMI GATC 1 cut(s) 151
Bst2UI CCWGG 2 cut(s) 213, 242
Bst4CI ACNGT 2 cut(s) 78, 362
Bst6I CTCTTC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 17, 102, 223, 230
BstF5I GGATG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 3 cut(s) 180, 368, 489
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 5 cut(s) 107, 131, 278, 479, 605
BstNI CCWGG 2 cut(s) 213, 242
BstPAI GACNNNNGTC 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 211, 240
BstV1I GCAGC 2 cut(s) 110, 592
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 3 cut(s) 216, 297, 328
BtsCI GGATG 1 cut(s) 608
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 74, 231, 300, 349
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 326, 588
CseI GACGC 2 cut(s) 58, 471
CviAII CATG 1 cut(s) 574
DdeI CTNAG 4 cut(s) 17, 102, 223, 230
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 214, 295
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 211, 240
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 1 cut(s) 577
FaiI YATR 6 cut(s) 67, 194, 252, 288, 452, 575
FatI CATG 1 cut(s) 573
FauI CCCGC 1 cut(s) 548
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 99, 606
FokI GGATG 1 cut(s) 595
Fsp4HI GCNGC 2 cut(s) 99, 606
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 99, 606
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 3 cut(s) 447, 510, 549
HaeIII GGCC 3 cut(s) 216, 297, 328
HapII CCGG 2 cut(s) 474, 497
HgaI GACGC 2 cut(s) 58, 471
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 3 cut(s) 21, 188, 221
HpaII CCGG 2 cut(s) 474, 497
HphI GGTGA 2 cut(s) 486, 488
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 514, 533, 574
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 5 cut(s) 285, 370, 438, 444, 501
HpyCH4III ACNGT 2 cut(s) 78, 362
HpyCH4V TGCA 6 cut(s) 98, 110, 254, 261, 419, 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 131, 278, 479, 605
HpyF3I CTNAG 4 cut(s) 17, 102, 223, 230
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 4 cut(s) 130, 472, 535, 596
Lsp1109I GCAGC 2 cut(s) 110, 592
LweI GCATC 2 cut(s) 259, 617
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 2 cut(s) 216, 297
MluCI AATT 1 cut(s) 256
MluNI TGGCCA 2 cut(s) 216, 297
MlyI GAGTC 2 cut(s) 182, 215
MmeI TCCRAC 2 cut(s) 98, 163
MnlI CCTC 4 cut(s) 145, 153, 552, 622
Mox20I TGGCCA 2 cut(s) 216, 297
MscI TGGCCA 2 cut(s) 216, 297
Msp20I TGGCCA 2 cut(s) 216, 297
MspA1I CMGCKG 2 cut(s) 101, 555
MspI CCGG 2 cut(s) 474, 497
MspR9I CCNGG 2 cut(s) 213, 242
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 2 cut(s) 213, 242
MwoI GCNNNNNNNGC 5 cut(s) 107, 131, 278, 479, 605
NdeII GATC 1 cut(s) 151
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 70
PagI TCATGA 1 cut(s) 573
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 100, 607
PleI GAGTC 2 cut(s) 182, 215
PpsI GAGTC 2 cut(s) 182, 215
PshAI GACNNNNGTC 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 211, 240
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 2 cut(s) 211, 240
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 2 cut(s) 326, 588
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 101
SatI GCNGC 2 cut(s) 99, 606
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 326, 588
SchI GAGTC 2 cut(s) 182, 215
ScrFI CCNGG 2 cut(s) 213, 242
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 103, 381, 469, 493, 532, 601
SfaNI GCATC 2 cut(s) 259, 617
SinI GGWCC 1 cut(s) 588
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 548, 555
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 211, 240
TaaI ACNGT 2 cut(s) 78, 362
TaqI TCGA 2 cut(s) 315, 513
TasI AATT 1 cut(s) 256
TfiI GAWTC 1 cut(s) 21
TscAI CASTG 4 cut(s) 81, 231, 307, 349
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 98, 605
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 328, 562
TspRI CASTG 4 cut(s) 81, 231, 307, 349
VpaK11BI GGWCC 1 cut(s) 588
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.