Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

30259532 .. 30263567

Gene Structure 4036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1218200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGATGATAGAAGAAGAAGAAGAAGAAAAGCCCATTCGTCTGCGGCTTTTGAAGAGGACAAGAACATGGCTCTAAAGAATAGCAACGATCACTGGGCATTTCTGGAAGAAATTGAAGCGCCTATGTGGGTTGATCTCACATTAGAAGCCAACTCAACAAACCAACATATTGATGATGACTGGTTTTATAGAAGCCATCTGTTCCACCAATGCTCTTCACGCCAGTTGAAGGCTGCATTTTCGACTTCCGGTGAGGATAGTATAGGCCTAAACTTTGACTTTGTAGGACCATCTTCACCACAACTTCCATCTTCTGTCTCTAAGTCAAGAGGCAAAGACTTCGTAAGCAAGAAATGGAGAGGGGGAAACCAGGATTTTGCAGATAAGCGGCACCTAGACAAAGTTCTGAGTGGGACATCTTCCTGTGGGAATTCAGGGTCCAGTGATAAGATGAAACCCAAATCAAGCTTTATACAGTTGAAAGGAACATCCAGTTCCAAATCAAGTTCAGTTTGCAAAAGCAGTTTAACTACAAATCACATACCCAGTTGCTCTAAGCCAACGTCTTCTGGTGGGGATCCAACATGTAGTTTGAATTCTGGGACAAACAAGGCAGATGAAAGCAGTACAACAAGCACCATAACATCAGAGATTGGTCAGCAGCAGCAACAACAAAAGTTTATGGAGAAATCAAATCCAGTATTGAGTCAAGCAAATGGGATATTTTCAGTCATAAAGGCTGGTTTCAGGAAAAGTGGTATTACAAGGCCAGCTGCCAGAGTGGAGATTCATGGTGATAGAAGGCAATCAAGAGTCCATAAATCTTCATCCAGTAAGTCGAGTGTGGGATCATCATCAAATCCTCGTTCTGAGGGCAGGGCCTCAACTTCTACATCAATACAGTACAAAGAAAGAACCCCAGATAGCAGAAATGTGGCAAGAATGAGTTATGCAACCAAGAACAGAATAAGACCTTCCAAAGTATCCAAGCCGTCTACTCATAAGATTGAGAGAGGGACTGCAAACAACAGAATGGGACCTAATGTTTCAAATTCAGTCCACGTGGAAGCAGCAAAACCAAAGGTTCAATATCAGATTCAGAGAAGGAAACCTCTGGAATCACTTAGAGTTAATGAAAATAAATCAACTACTGCTACTGTAAAATCCAAGGAGAAACCAGTAGTTGGTGGATCTAACAGAATGGCTGCCTCAGGAAAAGAGAATGTGAAAGGGAAAATGGCTGGGAGTCAGAAATGCAGTAACAAAGGCATTGCTCCAGTAACCATGGCTTGGAGTCCGAAAGGGACAAAACAGAGCATTTTGCAAAGGACTGACAGAACAGGACTGGCTGGAAAGGGAAAAGTGGGCGGTCAAAGCCATTTGGTAAGCCTGAAGGATATTCCAAAAAGACCCCATTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

51.81

Weight (kDa)

10.29

Isoelectric Point (pI)

53.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	2 cut(s)	1184, 1290
AccI	GTMKAC	1 cut(s)	995
AciI	CCGC	3 cut(s)	44, 388, 1368
AclWI	GGATC	4 cut(s)	572, 585, 856, 1198
AcsI	RAATTY	3 cut(s)	430, 595, 1051
AcuI	CTGAAG	1 cut(s)	1412
AcvI	CACGTG	1 cut(s)	1063
AfaI	GTAC	2 cut(s)	628, 905
AfiI	CCNNNNNNNGG	3 cut(s)	229, 1184, 1290
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	7 cut(s)	53, 116, 229, 481, 595, 1050, 1088
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	468, 773
AluI	AGCT	2 cut(s)	468, 773
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	4 cut(s)	572, 585, 856, 1198
AoxI	GGCC	3 cut(s)	265, 767, 879
ApeKI	GCWGC	6 cut(s)	233, 661, 664, 773, 1070, 1205
ApoI	RAATTY	3 cut(s)	430, 595, 1051
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	287, 438, 879, 1037
AsuHPI	GGTGA	3 cut(s)	263, 288, 806
AvaII	GGWCC	3 cut(s)	287, 438, 1037
AxyI	CCTNAGG	1 cut(s)	1210
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	6 cut(s)	220, 673, 676, 760, 1082, 1192
BccI	CCATC	3 cut(s)	204, 298, 316
BceAI	ACGGC	1 cut(s)	976
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	994
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	8 cut(s)	45, 234, 389, 662, 665, 774, 1071, 1206
BlsI	GCNGC	8 cut(s)	46, 235, 390, 663, 666, 775, 1072, 1207
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	3 cut(s)	287, 438, 1037
BmgT120I	GGNCC	4 cut(s)	287, 438, 879, 1037
BmiI	GGNNCC	4 cut(s)	392, 439, 579, 1038
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	2 cut(s)	103, 540
BmuI	ACTGGG	2 cut(s)	103, 540
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	1260
BsaAI	YACGTR	1 cut(s)	1063
BsaBI	GATNNNNATC	1 cut(s)	853
BsaJI	CCNNGG	2 cut(s)	1167, 1284
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 1184, 1290
Bse21I	CCTNAGG	1 cut(s)	1210
Bse3DI	GCAATG	1 cut(s)	1269
Bse8I	GATNNNNATC	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	1167, 1284
BseGI	GGATG	3 cut(s)	10, 488, 827
BseJI	GATNNNNATC	1 cut(s)	853
BseLI	CCNNNNNNNGG	3 cut(s)	229, 1184, 1290
BseMI	GCAATG	1 cut(s)	1269
BseMII	CTCAG	3 cut(s)	398, 861, 1224
BseXI	GCAGC	6 cut(s)	220, 673, 676, 760, 1082, 1192
BseYI	CCCAGC	1 cut(s)	1241
BshFI	GGCC	3 cut(s)	267, 769, 881
BshNI	GGYRCC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	5 cut(s)	427, 616, 1030, 1050, 1318
BslI	CCNNNNNNNGG	3 cut(s)	229, 1184, 1290
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	5 cut(s)	427, 616, 1030, 1050, 1318
BsnI	GGCC	3 cut(s)	267, 769, 881
Bsp143I	GATC	5 cut(s)	88, 133, 577, 848, 1190
Bsp19I	CCATGG	1 cut(s)	1284
BspACI	CCGC	3 cut(s)	44, 388, 1368
BspANI	GGCC	3 cut(s)	267, 769, 881
BspCNI	CTCAG	3 cut(s)	399, 862, 1223
BspLI	GGNNCC	4 cut(s)	392, 439, 579, 1038
BspPI	GGATC	4 cut(s)	572, 585, 856, 1198
BspQI	GCTCTTC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	1269
BssECI	CCNNGG	2 cut(s)	1167, 1284
BssMI	GATC	5 cut(s)	88, 133, 577, 848, 1190
BssT1I	CCWWGG	2 cut(s)	1167, 1284
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	3 cut(s)	477, 903, 1159
Bst6I	CTCTTC	2 cut(s)	48, 220
BstBAI	YACGTR	1 cut(s)	1063
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	6 cut(s)	321, 407, 555, 870, 1124, 1210
BstDSI	CCRYGG	1 cut(s)	1284
BstF5I	GGATG	3 cut(s)	10, 488, 827
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	5 cut(s)	91, 136, 580, 851, 1193
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	88, 133, 577, 848, 1190
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 1374
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	6 cut(s)	220, 673, 676, 760, 1082, 1192
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	2 cut(s)	577, 1190
BstYI	RGATCY	2 cut(s)	577, 1190
Bsu36I	CCTNAGG	1 cut(s)	1210
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	3 cut(s)	267, 769, 881
BtgI	CCRYGG	1 cut(s)	1284
BtsCI	GGATG	3 cut(s)	10, 488, 827
BtsIMutI	CAGTG	2 cut(s)	91, 448
Cac8I	GCNNGC	1 cut(s)	771
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	287, 438, 879, 1037
Csp6I	GTAC	2 cut(s)	627, 904
CviAII	CATG	4 cut(s)	67, 585, 791, 1285
CviQI	GTAC	2 cut(s)	627, 904
DdeI	CTNAG	6 cut(s)	321, 407, 555, 870, 1124, 1210
DpnI	GATC	5 cut(s)	90, 135, 579, 850, 1192
DpnII	GATC	5 cut(s)	88, 133, 577, 848, 1190
Eam1104I	CTCTTC	2 cut(s)	48, 220
EarI	CTCTTC	2 cut(s)	48, 220
Eco130I	CCWWGG	2 cut(s)	1167, 1284
Eco147I	AGGCCT	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	287, 438, 1037
Eco57I	CTGAAG	1 cut(s)	1412
Eco72I	CACGTG	1 cut(s)	1063
Eco81I	CCTNAGG	1 cut(s)	1210
EcoO109I	RGGNCCY	2 cut(s)	879, 1037
EcoRI	GAATTC	2 cut(s)	430, 595
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	1167, 1284
ErhI	CCWWGG	2 cut(s)	1167, 1284
FaeI	CATG	4 cut(s)	70, 588, 794, 1288
FaqI	GGGAC	5 cut(s)	427, 616, 1030, 1050, 1318
FatI	CATG	4 cut(s)	66, 584, 790, 1284
FblI	GTMKAC	1 cut(s)	995
Fnu4HI	GCNGC	8 cut(s)	45, 234, 389, 662, 665, 774, 1071, 1206
FokI	GGATG	3 cut(s)	17, 475, 814
Fsp4HI	GCNGC	8 cut(s)	45, 234, 389, 662, 665, 774, 1071, 1206
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	8 cut(s)	45, 234, 389, 662, 665, 774, 1071, 1206
GsaI	CCCAGC	1 cut(s)	1245
GsuI	CTGGAG	1 cut(s)	1260
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	267, 769, 881
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	70, 588, 794, 1288
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	7 cut(s)	706, 787, 813, 1096, 1118, 1246, 1294
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	263, 288, 806
Hpy166II	GTNNAC	2 cut(s)	996, 1060
Hpy188I	TCNGA	8 cut(s)	408, 649, 871, 1095, 1101, 1251, 1299, 1421
Hpy188III	TCNNGA	6 cut(s)	104, 327, 748, 810, 1115, 1212
Hpy8I	GTNNAC	2 cut(s)	996, 1060
HpyAV	CCTTC	5 cut(s)	223, 795, 984, 1098, 1387
HpyCH4III	ACNGT	3 cut(s)	477, 903, 1159
HpyCH4IV	ACGT	2 cut(s)	563, 1062
HpyCH4V	TGCA	7 cut(s)	236, 380, 516, 953, 1022, 1257, 1324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 1374
HpyF3I	CTNAG	6 cut(s)	321, 407, 555, 870, 1124, 1210
HpySE526I	ACGT	2 cut(s)	563, 1062
Hsp92II	CATG	4 cut(s)	70, 588, 794, 1288
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	5 cut(s)	88, 133, 577, 848, 1190
LguI	GCTCTTC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	1279
Lsp1109I	GCAGC	6 cut(s)	220, 673, 676, 760, 1082, 1192
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	2 cut(s)	563, 1062
MaeIII	GTNAC	2 cut(s)	1259, 1279
MalI	GATC	5 cut(s)	90, 135, 579, 850, 1192
MboI	GATC	5 cut(s)	88, 133, 577, 848, 1190
MflI	RGATCY	2 cut(s)	577, 1190
MluCI	AATT	4 cut(s)	111, 430, 595, 1051
MlyI	GAGTC	4 cut(s)	715, 822, 1255, 1303
MmeI	TCCRAC	1 cut(s)	605
MseI	TTAA	2 cut(s)	527, 1131
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	219, 1374
NcoI	CCATGG	1 cut(s)	1284
NdeII	GATC	5 cut(s)	88, 133, 577, 848, 1190
NlaIII	CATG	4 cut(s)	70, 588, 794, 1288
NlaIV	GGNNCC	4 cut(s)	392, 439, 579, 1038
NspI	RCATGY	1 cut(s)	588
PceI	AGGCCT	1 cut(s)	267
PciI	ACATGT	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	787, 1096, 1118
PflMI	CCANNNNNTGG	2 cut(s)	1184, 1290
PkrI	GCNGC	8 cut(s)	46, 235, 390, 663, 666, 775, 1072, 1207
PleI	GAGTC	4 cut(s)	714, 821, 1254, 1302
PmaCI	CACGTG	1 cut(s)	1063
PmlI	CACGTG	1 cut(s)	1063
PpsI	GAGTC	4 cut(s)	714, 821, 1254, 1302
Ppu21I	YACGTR	1 cut(s)	1063
PpuMI	RGGWCCY	1 cut(s)	1037
PscI	ACATGT	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	1 cut(s)	369
PspCI	CACGTG	1 cut(s)	1063
PspFI	CCCAGC	1 cut(s)	1241
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	4 cut(s)	392, 439, 579, 1038
PspPI	GGNCC	4 cut(s)	287, 438, 879, 1037
PspPPI	RGGWCCY	1 cut(s)	1037
PsuI	RGATCY	2 cut(s)	577, 1190
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	628, 905
RsaNI	GTAC	2 cut(s)	627, 904
RseI	CAYNNNNRTG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	527, 1131
SatI	GCNGC	8 cut(s)	45, 234, 389, 662, 665, 774, 1071, 1206
Sau3AI	GATC	5 cut(s)	88, 133, 577, 848, 1190
Sau96I	GGNCC	4 cut(s)	287, 438, 879, 1037
SchI	GAGTC	4 cut(s)	715, 822, 1255, 1303
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	9 cut(s)	396, 470, 566, 775, 976, 1042, 1065, 1086, 1114
SinI	GGWCC	3 cut(s)	287, 438, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	4 cut(s)	111, 430, 595, 1051
SseBI	AGGCCT	1 cut(s)	267
SsiI	CCGC	3 cut(s)	44, 388, 1368
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	1167, 1284
TaaI	ACNGT	3 cut(s)	477, 903, 1159
TaiI	ACGT	2 cut(s)	566, 1065
TaqI	TCGA	2 cut(s)	242, 839
TasI	AATT	4 cut(s)	111, 430, 595, 1051
TatI	WGTACW	2 cut(s)	626, 903
TauI	GCSGC	2 cut(s)	47, 391
TfiI	GAWTC	3 cut(s)	787, 1096, 1118
Tru1I	TTAA	2 cut(s)	527, 1131
Tru9I	TTAA	2 cut(s)	527, 1131
TscAI	CASTG	2 cut(s)	98, 448
TseI	GCWGC	6 cut(s)	233, 661, 664, 773, 1070, 1205
TspDTI	ATGAA	5 cut(s)	467, 633, 779, 816, 1149
TspRI	CASTG	2 cut(s)	98, 448
Van91I	CCANNNNNTGG	2 cut(s)	1184, 1290
VpaK11BI	GGWCC	3 cut(s)	287, 438, 1037
XapI	RAATTY	3 cut(s)	430, 595, 1051
XceI	RCATGY	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	995
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.