RchiOBHm_Chr5g0036061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006922
Physical Location & Seq
Forward (+)
30178969 .. 30184608
5640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31488

Sequence Viewer

Length: 1386 bp
ATGATGAAGAAGAAGAAGAATCACTGGGATTTTCTGGAAGAAATTGAAGCTCCTATGTGGGTGGATCTCACATTAGAAGTCGATTCGAACAAGCAAGATGGTGATGATGATTGGTTTTACACAAGCCACTTGTTCCACCAATGTTCTTCTCGTGAGTTGAAGATTGCATTTTCTCATTCTGGGGAGGAGAGTAAGGCCTTGAACTTTGACTTGCTAGGACCATCTTCGCCGAAGCTTCCATCTTCTGTGTCTAGATCAAGAGGCAAAAACTATGTGAGCAAGAAATGGAGAGGGGACAACCAGGTTGTTCCGATAGATAAGCGACACCCTGTCAATGTTCTGAGTGGGACATCTTCCTGCGTGACTTCGGAATCCAGTAATAACATGAAAACCAAACCAAGCTATGCACATCTGAAAGGAACTTCCCGTTCAAAGTCAAGTTGGGTTTCTAAAAGCAGCTCAATTGGAAATGGCATGCCAAGTTGCTCTCAGCCAATATCTTCTTGTGGGGATTCAACATCTACGGAAAAGAAGGCAGATGAAAGCAATACAGCAAGCATAATTACACATGAGAGTGGTCAGCAGCAACAGCAGAATATGGGAAAATCAAGTCACCCTCTAAGTCAAGCAAGTGCGCTTTTGTCACTCATAAAGACTGGTATGAGGAAAAGCTGTGTTACAAGACAAGCATCTAGAGTGGAGATTAATGGCGACAGAAGACAATCAAGAGGACGTAACTCTTCATCCGGCAAGTCTAGTGTTGGGTCATCTTCAAATCCTTGTTATGATGTCAGGAGCTCAACATCTACATCAATGCAATACAAAGAAAGAACACCAGACAGCAGAAATATGACAAGATTAAGTATTGCAGCCAAGAACAAGGTAAAAGTTTCTAAAGCATCTAAAACATCTACTAATAAGATTGAGCAAGGGACTTCTAACTACAGAATGGAACCTAATACTGGGAAGTCTACCTATCGGCAAGCAGCAAAACCAAAGGTTCAAGTTCACACTCTCAGAAGGAAACCTTTGGCGCCAGTTAGAGTAGATGAAAACAAGTTAGTTATTGCTACTATAAAGTCCAAAGAGAAACCAGTAGTTGGCGGGTCTTACAGATTGGCTGCCTCAGGGATAGAGAATGTGAAAGGGCTGGCTGCATCTAATAAAAAAGAGAATATTGTGAAAGGGAAAGCCACTGGGAGTCGGACTCAGAAATGCAATAGCAAAGGTGTTGCTGCTGGAACCAATATCACTGGTCAGAAAGGGACAAGCAATAGCATTCAGCAAGGACATGACAGAACAGGAATGGCTGGAAAGGAGAATATCCGTGTCAAAAGCCGTTCGGTAAGCGTGAAGGATATTTCCCAGAGACCCCATTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

50.36

Weight (kDa)

10.11

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccI GTMKAC 1 cut(s) 971
AciI CCGC 1 cut(s) 1104
AclWI GGATC 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 1034
AfiI CCNNNNNNNGG 2 cut(s) 962, 1100
AgsI TTSAA 7 cut(s) 47, 160, 202, 432, 516, 774, 1004
AhdI GACNNNNNGTC 1 cut(s) 329
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 6 cut(s) 50, 235, 402, 459, 672, 798
AluI AGCT 6 cut(s) 50, 235, 402, 459, 672, 798
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 1 cut(s) 1363
AlwI GGATC 1 cut(s) 72
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 7 cut(s) 456, 583, 869, 986, 1121, 1154, 1235
AseI ATTAAT 1 cut(s) 705
AspLEI GCGC 2 cut(s) 637, 1036
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 113, 605
AsuII TTCGAA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 1126
BanI GGYRCC 1 cut(s) 1033
BanII GRGCYC 1 cut(s) 800
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 800
BbvI GCAGC 7 cut(s) 468, 595, 881, 998, 1108, 1141, 1222
BccI CCATC 3 cut(s) 92, 229, 247
BceAI ACGGC 1 cut(s) 1323
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 1363
BfaI CTAG 4 cut(s) 215, 252, 693, 756
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 1 cut(s) 1037
BisI GCNGC 7 cut(s) 457, 584, 870, 987, 1122, 1155, 1236
BlsI GCNGC 7 cut(s) 458, 585, 871, 988, 1123, 1156, 1237
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 954, 1035, 1243
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 3 cut(s) 34, 972, 1206
BmsI GCATC 3 cut(s) 698, 908, 1166
BmuI ACTGGG 3 cut(s) 34, 972, 1206
BpiI GAAGAC 1 cut(s) 724
BplI GAGNNNNNCTC 2 cut(s) 1192, 1224
Bpu14I TTCGAA 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 1363
Bsc4I CCNNNNNNNGG 2 cut(s) 962, 1100
Bse1I ACTGG 8 cut(s) 29, 375, 661, 967, 1037, 1094, 1201, 1258
Bse21I CCTNAGG 1 cut(s) 1126
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 2 cut(s) 962, 1100
BseMII CTCAG 5 cut(s) 332, 503, 1030, 1140, 1223
BseNI ACTGG 8 cut(s) 29, 375, 661, 967, 1037, 1094, 1201, 1258
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 7 cut(s) 468, 595, 881, 998, 1108, 1141, 1222
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 1033
BsiHKAI GWGCWC 1 cut(s) 800
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 4 cut(s) 308, 361, 946, 1279
BslI CCNNNNNNNGG 2 cut(s) 962, 1100
BsmAI GTCTC 1 cut(s) 1363
BsmFI GGGAC 4 cut(s) 308, 361, 946, 1279
BsmI GAATGC 1 cut(s) 1278
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 1363
Bsp119I TTCGAA 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 2 cut(s) 64, 254
BspACI CCGC 1 cut(s) 1104
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 5 cut(s) 333, 502, 1029, 1139, 1222
BspLI GGNNCC 3 cut(s) 954, 1035, 1243
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 1033
BspTNI GGTCTC 1 cut(s) 1363
BsrI ACTGG 8 cut(s) 29, 375, 661, 967, 1037, 1094, 1201, 1258
BssMI GATC 2 cut(s) 64, 254
BssNI GRCGYC 1 cut(s) 1034
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 745
BstACI GRCGYC 1 cut(s) 1034
BstBI TTCGAA 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 476, 556, 984, 1152
BstDEI CTNAG 6 cut(s) 341, 489, 620, 1016, 1126, 1209
BstF5I GGATG 1 cut(s) 743
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 2 cut(s) 637, 1036
BstKTI GATC 2 cut(s) 67, 257
BstMAI GTCTC 1 cut(s) 1363
BstMBI GATC 2 cut(s) 64, 254
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 943
BstV1I GCAGC 7 cut(s) 468, 595, 881, 998, 1108, 1141, 1222
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 1126
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 3 cut(s) 22, 1194, 1251
Cac8I GCNNGC 4 cut(s) 476, 556, 984, 1152
CfoI GCGC 2 cut(s) 637, 1036
Cfr13I GGNCC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 300
CviAII CATG 4 cut(s) 385, 475, 569, 1292
DdeI CTNAG 6 cut(s) 341, 489, 620, 1016, 1126, 1209
DinI GGCGCC 1 cut(s) 1035
DpnI GATC 2 cut(s) 66, 256
DpnII GATC 2 cut(s) 64, 254
DriI GACNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 745
Eam1105I GACNNNNNGTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 798
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 800
Eco31I GGTCTC 1 cut(s) 1363
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 798
Eco81I CCTNAGG 1 cut(s) 1126
EcoICRI GAGCTC 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 800
EgeI GGCGCC 1 cut(s) 1035
EheI GGCGCC 1 cut(s) 1035
FaeI CATG 4 cut(s) 388, 478, 572, 1295
FalI AAGNNNNNCTT 2 cut(s) 1012, 1044
FaqI GGGAC 4 cut(s) 308, 361, 946, 1279
FatI CATG 4 cut(s) 384, 474, 568, 1291
FauI CCCGC 1 cut(s) 1097
FblI GTMKAC 1 cut(s) 971
Fnu4HI GCNGC 7 cut(s) 457, 584, 870, 987, 1122, 1155, 1236
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 7 cut(s) 457, 584, 870, 987, 1122, 1155, 1236
FspBI CTAG 4 cut(s) 215, 252, 693, 756
GlaI GCGC 2 cut(s) 636, 1035
GluI GCNGC 7 cut(s) 457, 584, 870, 987, 1122, 1155, 1236
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 747
HhaI GCGC 2 cut(s) 637, 1036
Hin1I GRCGYC 1 cut(s) 1034
Hin1II CATG 4 cut(s) 388, 478, 572, 1295
Hin6I GCGC 2 cut(s) 635, 1034
HinP1I GCGC 2 cut(s) 635, 1034
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 6 cut(s) 19, 83, 371, 512, 1201, 1207
HpaII CCGG 1 cut(s) 747
HphI GGTGA 2 cut(s) 113, 605
Hpy166II GTNNAC 2 cut(s) 972, 1009
Hpy188I TCNGA 9 cut(s) 312, 342, 370, 414, 1019, 1206, 1212, 1260, 1382
Hpy188III TCNNGA 7 cut(s) 35, 152, 252, 258, 693, 726, 793
Hpy8I GTNNAC 2 cut(s) 972, 1009
HpyAV CCTTC 3 cut(s) 526, 1014, 1348
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 6 cut(s) 167, 407, 817, 869, 1157, 1218
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpyF3I CTNAG 6 cut(s) 341, 489, 620, 1016, 1126, 1209
HpySE526I ACGT 1 cut(s) 733
Hsp92I GRCGYC 1 cut(s) 1034
Hsp92II CATG 4 cut(s) 388, 478, 572, 1295
HspAI GCGC 2 cut(s) 635, 1034
KasI GGCGCC 1 cut(s) 1033
Kzo9I GATC 2 cut(s) 64, 254
LmnI GCTCC 2 cut(s) 55, 795
Lsp1109I GCAGC 7 cut(s) 468, 595, 881, 998, 1108, 1141, 1222
LweI GCATC 3 cut(s) 698, 908, 1166
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 4 cut(s) 215, 252, 693, 756
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 5 cut(s) 361, 611, 642, 676, 734
MalI GATC 2 cut(s) 66, 256
MboI GATC 2 cut(s) 64, 254
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 3 cut(s) 42, 462, 561
Mly113I GGCGCC 1 cut(s) 1034
MlyI GAGTC 2 cut(s) 1201, 1210
MmeI TCCRAC 1 cut(s) 1184
MnlI CCTC 7 cut(s) 178, 254, 284, 627, 657, 722, 1135
MseI TTAA 2 cut(s) 705, 860
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 1278
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 589
NarI GGCGCC 1 cut(s) 1034
NdeII GATC 2 cut(s) 64, 254
NlaIII CATG 4 cut(s) 388, 478, 572, 1295
NlaIV GGNNCC 3 cut(s) 954, 1035, 1243
NmuCI GTSAC 3 cut(s) 361, 611, 642
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 1 cut(s) 86
PaeI GCATGC 1 cut(s) 478
PceI AGGCCT 1 cut(s) 197
PctI GAATGC 1 cut(s) 1278
PfeI GAWTC 4 cut(s) 19, 83, 371, 512
PflMI CCANNNNNTGG 1 cut(s) 1100
PkrI GCNGC 7 cut(s) 458, 585, 871, 988, 1123, 1156, 1237
PleI GAGTC 2 cut(s) 1201, 1209
PluTI GGCGCC 1 cut(s) 1037
PpsI GAGTC 2 cut(s) 1201, 1209
PshBI ATTAAT 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 954, 1035, 1243
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 705, 860
SatI GCNGC 7 cut(s) 457, 584, 870, 987, 1122, 1155, 1236
Sau3AI GATC 2 cut(s) 64, 254
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 1201, 1210
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 800
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 3 cut(s) 698, 908, 1166
SfcI CTRYAG 1 cut(s) 943
SfoI GGCGCC 1 cut(s) 1035
SfuI TTCGAA 1 cut(s) 86
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 573
SphI GCATGC 1 cut(s) 478
Sse9I AATT 3 cut(s) 42, 462, 561
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 1 cut(s) 1104
SspDI GGCGCC 1 cut(s) 1033
SspI AATATT 1 cut(s) 1177
SspMI CTAG 4 cut(s) 215, 252, 693, 756
SstI GAGCTC 1 cut(s) 800
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 736
TaqI TCGA 2 cut(s) 81, 86
TasI AATT 3 cut(s) 42, 462, 561
TfiI GAWTC 4 cut(s) 19, 83, 371, 512
Tru1I TTAA 2 cut(s) 705, 860
Tru9I TTAA 2 cut(s) 705, 860
TscAI CASTG 3 cut(s) 29, 1201, 1258
TseFI GTSAC 3 cut(s) 361, 611, 642
TseI GCWGC 7 cut(s) 456, 583, 869, 986, 1121, 1154, 1235
Tsp45I GTSAC 3 cut(s) 361, 611, 642
TspDTI ATGAA 5 cut(s) 20, 401, 555, 732, 1065
TspGWI ACGGA 2 cut(s) 539, 1316
TspRI CASTG 3 cut(s) 29, 1201, 1258
Van91I CCANNNNNTGG 1 cut(s) 1100
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 705
XbaI TCTAGA 2 cut(s) 251, 692
XceI RCATGY 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 971
XspI CTAG 4 cut(s) 215, 252, 693, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.