Rh5CG278000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006922
Physical Location & Seq
Forward (+)
30268406 .. 30274454
6049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG278000.1

Sequence Viewer

Length: 1389 bp
ATGATGATGAAGAAGAAGAAGAATCACTGGGATTTTCTGGAAGAAATTGAAGCTCCTATGTGGGTGGATCTCACATTAGAAGTCGATTCGAACAAGCAAGATGGTGATGATGATTGGTTTTACACAAGCCACTTGTTCCACCAATGTTCTTCTCGTGAGTTGAAGATTGCGTTTTCTCATTCTGGGGAGGAGAGTACGGCCTTAAACTTGGACTTACTTGGACCATCTTCGCCAAAGCTTCCATCTTCTGTGTCTAGATCAAGAGGCAAAAACTATGTGAGCAAGAAATGGAGAGGGGACAACCAGGTTGTTCCGATAGATAAGCGACACCCTGTCAATGTTCTGAGTGGGACATCTTCCTGTGTGACTTCGGAATCCAGTAATAACATGAAAACCAAACCAAGCTATGCACATCTGAAAGGAACTTCCCGTTCAAAGTCAAGTTGGGTTTCTAAAAGCAGCTCAATTGGAAATGGCATGCCAAGTTGCTCTCAGCCAATATCTTCTTGTGGGGATTCAACGTCTACGGAAAAGAAAGCAGATGAAAGCAATACAGCAAGCGCAATTACACATGAGAGTGGTCAGCAGCAACAGCAGAATATGGGAAAATCAAGTCATCCTGTAAGTCAAGCAAGTGCGCTTTTGTCACTCATAAAGACTGGTATGAGGAAAAGCTGTGTCACAAGACAAGCATCTAGAGTGGAGATTAATGGCGACAGAAGACAATCAAGAGGACGTAACTCTTCATCCGGCAAGTCTAGTGTTGGGTCATCTTCAAATCCTTGTTATGATGTCAGGAGCTCAACATCTACATCAATGCAATACAAAGAAAGAACACCAGACAGCAGAAATATGACAAGATTAAGTATTGCAGCCAAGAACAAAGTAAAAGTTTCTAAAGCATCTAAAACATCTACTAATAAGATTGAGCAAGGGACTTCTAACTACAGAATGGAACCTAATACTGGGAAGTCTACCTATCAGCAAGCAGCAAAACCAAAGGTTCAAGTTCAGACTCTCAGAAGGAAACCTTTGGCGCCAGTTAGAGTTGATGAAAACAAGTTAATTACTGCTACTATAAAGTCCAAAGAGAAACCAGTAGTTGGCGGGTCTTACAGATTGGCTGCCTCAGGGATAGAGAATGTGAAAGGGCTGGCTGCATCTAATAAAAAAGAGAATATTGTGAAAGGGAAAGCCACTGGGAGTCGGACTCAGAAATGCAATAGCAAAGGTGTTGCTGCCGGAACCAATATCACTGGTCAGAAAGGGACAAGCAATAGCATTCAGCAAGGACATGACAGAACAGGACTGGCTGGAAAGGAGAATATCCGTGTCAAAAGCCGTTTGGTAAGCGTGAAGGATATTTCCCAGAGACCCCATTTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

50.35

Weight (kDa)

10.07

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccI GTMKAC 2 cut(s) 524, 974
AciI CCGC 1 cut(s) 1107
AclWI GGATC 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 1037
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 2 cut(s) 965, 1103
AgsI TTSAA 6 cut(s) 50, 163, 435, 519, 777, 1007
AhdI GACNNNNNGTC 1 cut(s) 332
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 6 cut(s) 53, 238, 405, 462, 675, 801
AluI AGCT 6 cut(s) 53, 238, 405, 462, 675, 801
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 1 cut(s) 1366
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 7 cut(s) 459, 586, 872, 989, 1124, 1157, 1238
AseI ATTAAT 1 cut(s) 708
AspLEI GCGC 3 cut(s) 563, 640, 1039
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 116
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 803
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 727
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 7 cut(s) 471, 598, 884, 1001, 1111, 1144, 1225
BccI CCATC 3 cut(s) 95, 232, 250
BceAI ACGGC 2 cut(s) 213, 1326
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 1366
BfaI CTAG 3 cut(s) 255, 696, 759
BfmI CTRYAG 1 cut(s) 946
BfoI RGCGCY 1 cut(s) 1040
BisI GCNGC 7 cut(s) 460, 587, 873, 990, 1125, 1158, 1239
BlsI GCNGC 7 cut(s) 461, 588, 874, 991, 1126, 1159, 1240
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 3 cut(s) 957, 1038, 1246
BmrFI CCNGG 1 cut(s) 305
BmrI ACTGGG 3 cut(s) 37, 975, 1209
BmsI GCATC 3 cut(s) 701, 911, 1169
BmuI ACTGGG 3 cut(s) 37, 975, 1209
BpiI GAAGAC 1 cut(s) 727
BplI GAGNNNNNCTC 2 cut(s) 1195, 1227
Bpu14I TTCGAA 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 1037
BsaI GGTCTC 1 cut(s) 1366
Bsc4I CCNNNNNNNGG 2 cut(s) 965, 1103
Bse1I ACTGG 9 cut(s) 32, 378, 664, 970, 1040, 1097, 1204, 1261, 1314
Bse21I CCTNAGG 1 cut(s) 1129
BseBI CCWGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 616, 746
BseLI CCNNNNNNNGG 2 cut(s) 965, 1103
BseMII CTCAG 5 cut(s) 335, 506, 1033, 1143, 1226
BseNI ACTGG 9 cut(s) 32, 378, 664, 970, 1040, 1097, 1204, 1261, 1314
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 7 cut(s) 471, 598, 884, 1001, 1111, 1144, 1225
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 2 cut(s) 750, 1242
BslFI GGGAC 4 cut(s) 311, 364, 949, 1282
BslI CCNNNNNNNGG 2 cut(s) 965, 1103
BsmAI GTCTC 1 cut(s) 1366
BsmFI GGGAC 4 cut(s) 311, 364, 949, 1282
BsmI GAATGC 1 cut(s) 1281
BsnI GGCC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 1366
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 803
Bsp143I GATC 2 cut(s) 67, 257
BspACI CCGC 1 cut(s) 1107
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 5 cut(s) 336, 505, 1032, 1142, 1225
BspLI GGNNCC 3 cut(s) 957, 1038, 1246
BspPI GGATC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 1366
BsrI ACTGG 9 cut(s) 32, 378, 664, 970, 1040, 1097, 1204, 1261, 1314
BssMI GATC 2 cut(s) 67, 257
BssNI GRCGYC 1 cut(s) 1037
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 479, 559, 987, 1155
BstDEI CTNAG 5 cut(s) 344, 492, 1019, 1129, 1212
BstF5I GGATG 2 cut(s) 616, 746
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 3 cut(s) 563, 640, 1039
BstKTI GATC 2 cut(s) 70, 260
BstMAI GTCTC 1 cut(s) 1366
BstMBI GATC 2 cut(s) 67, 257
BstMWI GCNNNNNNNGC 1 cut(s) 592
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 946
BstV1I GCAGC 7 cut(s) 471, 598, 884, 1001, 1111, 1144, 1225
BstV2I GAAGAC 1 cut(s) 727
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 1129
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 2 cut(s) 616, 746
BtsIMutI CAGTG 3 cut(s) 25, 1197, 1254
Cac8I GCNNGC 4 cut(s) 479, 559, 987, 1155
CfoI GCGC 3 cut(s) 563, 640, 1039
Cfr13I GGNCC 1 cut(s) 221
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 195
CviAII CATG 4 cut(s) 388, 478, 572, 1295
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 5 cut(s) 344, 492, 1019, 1129, 1212
DinI GGCGCC 1 cut(s) 1038
DpnI GATC 2 cut(s) 69, 259
DpnII GATC 2 cut(s) 67, 257
DriI GACNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 748
Eam1105I GACNNNNNGTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 748
Ecl136II GAGCTC 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 1366
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 1129
EcoICRI GAGCTC 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 803
EgeI GGCGCC 1 cut(s) 1038
EheI GGCGCC 1 cut(s) 1038
FaeI CATG 4 cut(s) 391, 481, 575, 1298
FalI AAGNNNNNCTT 2 cut(s) 1015, 1047
FaqI GGGAC 4 cut(s) 311, 364, 949, 1282
FatI CATG 4 cut(s) 387, 477, 571, 1294
FauI CCCGC 1 cut(s) 1100
FblI GTMKAC 2 cut(s) 524, 974
Fnu4HI GCNGC 7 cut(s) 460, 587, 873, 990, 1125, 1158, 1239
FokI GGATG 2 cut(s) 603, 733
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 7 cut(s) 460, 587, 873, 990, 1125, 1158, 1239
FspBI CTAG 3 cut(s) 255, 696, 759
GlaI GCGC 3 cut(s) 562, 639, 1038
GluI GCNGC 7 cut(s) 460, 587, 873, 990, 1125, 1158, 1239
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 1 cut(s) 200
HapII CCGG 2 cut(s) 750, 1242
HhaI GCGC 3 cut(s) 563, 640, 1039
Hin1I GRCGYC 1 cut(s) 1037
Hin1II CATG 4 cut(s) 391, 481, 575, 1298
Hin6I GCGC 3 cut(s) 561, 638, 1037
HinP1I GCGC 3 cut(s) 561, 638, 1037
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 7 cut(s) 22, 86, 374, 515, 1015, 1204, 1210
HpaII CCGG 2 cut(s) 750, 1242
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 525, 975
Hpy188III TCNNGA 7 cut(s) 38, 155, 255, 261, 696, 729, 796
Hpy8I GTNNAC 2 cut(s) 525, 975
HpyAV CCTTC 2 cut(s) 1017, 1351
HpyCH4IV ACGT 2 cut(s) 521, 736
HpyCH4V TGCA 5 cut(s) 410, 820, 872, 1160, 1221
HpyF10VI GCNNNNNNNGC 1 cut(s) 592
HpyF3I CTNAG 5 cut(s) 344, 492, 1019, 1129, 1212
HpySE526I ACGT 2 cut(s) 521, 736
Hsp92I GRCGYC 1 cut(s) 1037
Hsp92II CATG 4 cut(s) 391, 481, 575, 1298
HspAI GCGC 3 cut(s) 561, 638, 1037
KasI GGCGCC 1 cut(s) 1036
Kzo9I GATC 2 cut(s) 67, 257
LmnI GCTCC 2 cut(s) 58, 798
Lsp1109I GCAGC 7 cut(s) 471, 598, 884, 1001, 1111, 1144, 1225
LweI GCATC 3 cut(s) 701, 911, 1169
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 3 cut(s) 255, 696, 759
MaeII ACGT 2 cut(s) 521, 736
MaeIII GTNAC 4 cut(s) 364, 645, 679, 737
MalI GATC 2 cut(s) 69, 259
MboI GATC 2 cut(s) 67, 257
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 803
MluCI AATT 4 cut(s) 45, 465, 564, 1065
Mly113I GGCGCC 1 cut(s) 1037
MlyI GAGTC 3 cut(s) 1009, 1204, 1213
MmeI TCCRAC 1 cut(s) 1187
MnlI CCTC 6 cut(s) 181, 257, 287, 660, 725, 1138
MseI TTAA 4 cut(s) 203, 708, 863, 1064
MslI CAYNNNNRTG 1 cut(s) 576
MspI CCGG 2 cut(s) 750, 1242
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 1281
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 592
NarI GGCGCC 1 cut(s) 1037
NdeII GATC 2 cut(s) 67, 257
NlaIII CATG 4 cut(s) 391, 481, 575, 1298
NlaIV GGNNCC 3 cut(s) 957, 1038, 1246
NmuCI GTSAC 3 cut(s) 364, 645, 679
NspI RCATGY 1 cut(s) 481
NspV TTCGAA 1 cut(s) 89
PaeI GCATGC 1 cut(s) 481
PctI GAATGC 1 cut(s) 1281
PfeI GAWTC 4 cut(s) 22, 86, 374, 515
PflMI CCANNNNNTGG 1 cut(s) 1103
PkrI GCNGC 7 cut(s) 461, 588, 874, 991, 1126, 1159, 1240
PleI GAGTC 3 cut(s) 1009, 1204, 1212
PluTI GGCGCC 1 cut(s) 1040
PpsI GAGTC 3 cut(s) 1009, 1204, 1212
PshBI ATTAAT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 803
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 957, 1038, 1246
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 576
SacI GAGCTC 1 cut(s) 803
SaqAI TTAA 4 cut(s) 203, 708, 863, 1064
SatI GCNGC 7 cut(s) 460, 587, 873, 990, 1125, 1158, 1239
Sau3AI GATC 2 cut(s) 67, 257
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 3 cut(s) 1009, 1204, 1213
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 803
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 3 cut(s) 701, 911, 1169
SfcI CTRYAG 1 cut(s) 946
SfoI GGCGCC 1 cut(s) 1038
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 576
SphI GCATGC 1 cut(s) 481
Sse9I AATT 4 cut(s) 45, 465, 564, 1065
SsiI CCGC 1 cut(s) 1107
SspDI GGCGCC 1 cut(s) 1036
SspI AATATT 1 cut(s) 1180
SspMI CTAG 3 cut(s) 255, 696, 759
SstI GAGCTC 1 cut(s) 803
StyD4I CCNGG 1 cut(s) 303
TaiI ACGT 2 cut(s) 524, 739
TaqI TCGA 2 cut(s) 84, 89
TasI AATT 4 cut(s) 45, 465, 564, 1065
TfiI GAWTC 4 cut(s) 22, 86, 374, 515
Tru1I TTAA 4 cut(s) 203, 708, 863, 1064
Tru9I TTAA 4 cut(s) 203, 708, 863, 1064
TscAI CASTG 3 cut(s) 32, 1204, 1261
TseFI GTSAC 3 cut(s) 364, 645, 679
TseI GCWGC 7 cut(s) 459, 586, 872, 989, 1124, 1157, 1238
Tsp45I GTSAC 3 cut(s) 364, 645, 679
TspDTI ATGAA 5 cut(s) 23, 404, 558, 735, 1068
TspGWI ACGGA 2 cut(s) 542, 1319
TspRI CASTG 3 cut(s) 32, 1204, 1261
Van91I CCANNNNNTGG 1 cut(s) 1103
VpaK11BI GGWCC 1 cut(s) 221
VspI ATTAAT 1 cut(s) 708
XbaI TCTAGA 2 cut(s) 254, 695
XceI RCATGY 1 cut(s) 481
XmiI GTMKAC 2 cut(s) 524, 974
XspI CTAG 3 cut(s) 255, 696, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.