Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

17942119 .. 17944426

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATGATAGAAGAAGAAGAAAAGCCCATTGGTCTGCGGCTTTTGAGGAGCACAAGAACATGGCTCTAAAGAATAGCAACGATCACTGGGCATTTCTGGAAGAAATTGAAGCGCCTATGTGGGTTGATCTCACATTAGAAGCCAACTCAACAAACCAACATATTGATGATGACTGGTTTTATAGAAGCCATCTGTTCCACCAATGCTCTTCACGCCAGTTGAAGGCTGCATTTTCGAATTCCGGTGAGGATAGTATAGGCCTAAACTTTGACTTAGTAGGACCATCTTCACCACAACTTCCATCTTCTGTCTCTAAGTCAAGAGGCAAAGACTTCATAAGCAAGAAATGGAGAGGGGAAAACCAGGATTTTACAGATAAGCGGCACCTAGACAAAGTATTGAGTGGGACATCTTCCTGTGGGAATTCAGGGTCCAGTGATAAGATGAAACCCAAATCAAGCTTTATACAGTTGAAAGGAACATCCAGTTCCAAATCAAGTTCAGTTTGCAAAAGCAGTTTAACTACAAATCACATACCCAGTTGCTCTAAGCCAACGTCTTCTGGTGGGGATCCAACATGTAGTTTGAGTTCTGTGACAAACAAGGCAGATGAAAGCAGTACAACAAGCACCATAACATCAGAGATTGGTCAGCAGCAGCAACAACAAAAGTTTATGGAGAAGTCAAATCCAGTATTGAGTCAAACAAATGGGATATTTTCAGTCATAAAGGCTGGTTTCAGGAAAAGTGGTATTACAAGGCCAGCAGCCAGAGTGGAGATTAATGGTGATAGAAGGCAATCAAGAGTCCATAAATCTTCATCCAGTAAGTCTAGTGTGGGATCATCATCAAATCCTCGTTCTGAGGGCAGGGCCTCAACATCTACATCAATACAGTACAAAGAAAGAACCCCAGATAGCAGAAATGTGGCAAGAATGAGTTATGCAACCAAGAACAGAATAAGACCTTCCAAAGTATCCAAGCCGTCTAATCATAAGATTGCCACTAATGTTTCGAAGTCATATGCAGCGATGGACCACGAGATTGATGTTAACGTGAATCAGTGTTTGTACAGGTTCAATATCAGATTCAGAGAAGGAAACCTCTGGAATCAGTTAGAGTTAATGAAAATAAGTCAACTACTGCTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

385

Amino Acids

42.76

Weight (kDa)

9.74

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	384
AciI	CCGC	2 cut(s)	38, 382
AclWI	GGATC	3 cut(s)	566, 579, 850
AcsI	RAATTY	2 cut(s)	238, 424
AfaI	GTAC	3 cut(s)	622, 899, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	110, 223, 475, 1081
AjnI	CCWGG	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	1 cut(s)	462
AluI	AGCT	1 cut(s)	462
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	566, 579, 850
AoxI	GGCC	3 cut(s)	259, 761, 873
ApeKI	GCWGC	5 cut(s)	227, 655, 658, 767, 1028
ApoI	RAATTY	2 cut(s)	238, 424
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	4 cut(s)	281, 432, 873, 1036
AsuHPI	GGTGA	3 cut(s)	257, 282, 800
AsuII	TTCGAA	2 cut(s)	236, 1016
AvaII	GGWCC	3 cut(s)	281, 432, 1036
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	1040
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	214, 667, 670, 779, 1040
BccI	CCATC	4 cut(s)	198, 292, 310, 1027
BceAI	ACGGC	1 cut(s)	970
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	389, 834
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	988
BisI	GCNGC	7 cut(s)	39, 228, 383, 656, 659, 768, 1029
BlsI	GCNGC	7 cut(s)	40, 229, 384, 657, 660, 769, 1030
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	3 cut(s)	281, 432, 1036
BmgT120I	GGNCC	4 cut(s)	281, 432, 873, 1036
BmiI	GGNNCC	3 cut(s)	386, 433, 573
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	2 cut(s)	97, 534
BmuI	ACTGGG	2 cut(s)	97, 534
BpiI	GAAGAC	1 cut(s)	552
Bpu14I	TTCGAA	2 cut(s)	236, 1016
BsaBI	GATNNNNATC	1 cut(s)	847
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	8 cut(s)	92, 179, 217, 435, 486, 540, 692, 825
Bse8I	GATNNNNATC	1 cut(s)	847
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	3 cut(s)	10, 482, 821
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	8 cut(s)	92, 179, 217, 435, 486, 540, 692, 825
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	5 cut(s)	214, 667, 670, 779, 1040
BshFI	GGCC	3 cut(s)	261, 763, 875
BshNI	GGYRCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	261, 763, 875
Bsp119I	TTCGAA	2 cut(s)	236, 1016
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	4 cut(s)	82, 127, 571, 842
BspACI	CCGC	2 cut(s)	38, 382
BspANI	GGCC	3 cut(s)	261, 763, 875
BspCNI	CTCAG	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	386, 433, 573
BspPI	GGATC	3 cut(s)	566, 579, 850
BspQI	GCTCTTC	1 cut(s)	214
BspT104I	TTCGAA	2 cut(s)	236, 1016
BspT107I	GGYRCC	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	1071
BsrI	ACTGG	8 cut(s)	92, 179, 217, 435, 486, 540, 692, 825
BssMI	GATC	4 cut(s)	82, 127, 571, 842
BssSI	CACGAG	1 cut(s)	1040
Bst2BI	CACGAG	1 cut(s)	1040
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	3 cut(s)	471, 897, 1152
Bst6I	CTCTTC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	1071
BstBI	TTCGAA	2 cut(s)	236, 1016
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	4 cut(s)	274, 315, 549, 864
BstF5I	GGATG	3 cut(s)	10, 482, 821
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	4 cut(s)	85, 130, 574, 845
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	82, 127, 571, 842
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	5 cut(s)	214, 667, 670, 779, 1040
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	3 cut(s)	261, 763, 875
BtgZI	GCGATG	1 cut(s)	1046
BtsCI	GGATG	3 cut(s)	10, 482, 821
BtsIMutI	CAGTG	3 cut(s)	85, 442, 1070
Cac8I	GCNNGC	1 cut(s)	765
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	4 cut(s)	281, 432, 873, 1036
Csp6I	GTAC	3 cut(s)	621, 898, 1072
CviAII	CATG	2 cut(s)	61, 579
CviQI	GTAC	3 cut(s)	621, 898, 1072
DdeI	CTNAG	4 cut(s)	274, 315, 549, 864
DpnI	GATC	4 cut(s)	84, 129, 573, 844
DpnII	GATC	4 cut(s)	82, 127, 571, 842
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	261
Eco47I	GGWCC	3 cut(s)	281, 432, 1036
EcoO109I	RGGNCCY	1 cut(s)	873
EcoRI	GAATTC	2 cut(s)	238, 424
EcoRII	CCWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	64, 582
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	2 cut(s)	60, 578
FauNDI	CATATG	1 cut(s)	1024
Fnu4HI	GCNGC	7 cut(s)	39, 228, 383, 656, 659, 768, 1029
FokI	GGATG	3 cut(s)	17, 469, 808
Fsp4HI	GCNGC	7 cut(s)	39, 228, 383, 656, 659, 768, 1029
FspBI	CTAG	2 cut(s)	389, 834
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	7 cut(s)	39, 228, 383, 656, 659, 768, 1029
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	261, 763, 875
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	64, 582
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	2 cut(s)	1054, 1139
HindII	GTYRAC	2 cut(s)	1054, 1139
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	5 cut(s)	700, 807, 1060, 1089, 1111
HpaI	GTTAAC	1 cut(s)	1054
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	257, 282, 800
Hpy166II	GTNNAC	2 cut(s)	1054, 1139
Hpy188I	TCNGA	4 cut(s)	643, 865, 1088, 1094
Hpy188III	TCNNGA	5 cut(s)	98, 321, 742, 804, 1108
Hpy8I	GTNNAC	2 cut(s)	1054, 1139
HpyAV	CCTTC	4 cut(s)	217, 789, 978, 1091
HpyCH4III	ACNGT	3 cut(s)	471, 897, 1152
HpyCH4IV	ACGT	2 cut(s)	557, 1056
HpyCH4V	TGCA	4 cut(s)	230, 510, 947, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	4 cut(s)	274, 315, 549, 864
HpySE526I	ACGT	2 cut(s)	557, 1056
Hsp92II	CATG	2 cut(s)	64, 582
HspAI	GCGC	1 cut(s)	113
KspAI	GTTAAC	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	82, 127, 571, 842
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	5 cut(s)	214, 667, 670, 779, 1040
MaeI	CTAG	2 cut(s)	389, 834
MaeII	ACGT	2 cut(s)	557, 1056
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	4 cut(s)	84, 129, 573, 844
MboI	GATC	4 cut(s)	82, 127, 571, 842
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	3 cut(s)	105, 238, 424
MlyI	GAGTC	2 cut(s)	709, 816
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	8 cut(s)	40, 241, 317, 347, 859, 867, 886, 1115
MseI	TTAA	4 cut(s)	521, 783, 1053, 1124
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	4 cut(s)	82, 127, 571, 842
NlaIII	CATG	2 cut(s)	64, 582
NlaIV	GGNNCC	3 cut(s)	386, 433, 573
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	582
NspV	TTCGAA	2 cut(s)	236, 1016
PceI	AGGCCT	1 cut(s)	261
PciI	ACATGT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	214
PfeI	GAWTC	3 cut(s)	1060, 1089, 1111
PkrI	GCNGC	7 cut(s)	40, 229, 384, 657, 660, 769, 1030
PleI	GAGTC	2 cut(s)	708, 815
PpsI	GAGTC	2 cut(s)	708, 815
PscI	ACATGT	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	386, 433, 573
PspPI	GGNCC	4 cut(s)	281, 432, 873, 1036
PsrI	GAACNNNNNNTAC	2 cut(s)	574, 606
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	3 cut(s)	622, 899, 1073
RsaNI	GTAC	3 cut(s)	621, 898, 1072
RseI	CAYNNNNRTG	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	4 cut(s)	521, 783, 1053, 1124
SatI	GCNGC	7 cut(s)	39, 228, 383, 656, 659, 768, 1029
Sau3AI	GATC	4 cut(s)	82, 127, 571, 842
Sau96I	GGNCC	4 cut(s)	281, 432, 873, 1036
SchI	GAGTC	2 cut(s)	709, 816
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	390, 464, 560, 970, 1059, 1079, 1107
SfuI	TTCGAA	2 cut(s)	236, 1016
SinI	GGWCC	3 cut(s)	281, 432, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	105, 238, 424
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	38, 382
SspMI	CTAG	2 cut(s)	389, 834
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	471, 897, 1152
TaiI	ACGT	2 cut(s)	560, 1059
TaqI	TCGA	2 cut(s)	236, 1016
TasI	AATT	3 cut(s)	105, 238, 424
TatI	WGTACW	3 cut(s)	620, 897, 1071
TauI	GCSGC	2 cut(s)	41, 385
TfiI	GAWTC	3 cut(s)	1060, 1089, 1111
Tru1I	TTAA	4 cut(s)	521, 783, 1053, 1124
Tru9I	TTAA	4 cut(s)	521, 783, 1053, 1124
TscAI	CASTG	3 cut(s)	92, 442, 1070
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	5 cut(s)	227, 655, 658, 767, 1028
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	325, 461, 627, 810, 1142
TspRI	CASTG	3 cut(s)	92, 442, 1070
VpaK11BI	GGWCC	3 cut(s)	281, 432, 1036
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	2 cut(s)	238, 424
XceI	RCATGY	1 cut(s)	582
XspI	CTAG	2 cut(s)	389, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.