Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

63694643 .. 63698779

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGATGATGATGAAGAAGAAGAAGAATCACTGGGATTTTCTGGAAGAAATTGAAGCTCCTATGTGGGTGGATCTCACATTAGAAGTCGATTCGAACAAGCAAGATGGTGATGATGATTGGTTTTGCACAAGCCACTTGTTCCACCAATGTTCTTCTCGTGAGTTGAAGATTGCGTTTTCTCATTCTGGGGAGGAGAGTACGGCCTTAAACTTGGACTTACTTGGACCATCTTCGCCAAAGCTTCCATCTTCTGTGTCTAGATCAAGAGGCAAAGCCTATGTGAGCAAGAAATGGAGAGGGGACAACCAGGTTGTTCCGATAGATAAGCGACACCCTGTCAATGTTCTGAGTGGGACATCTTCCTGCGTGACTTCGGAATCCAGTAATAACATGAAAACCAAACCAAGCTATGCACATCTGAAAGGAACTTCCCGTTCAAAGTCAAGTTGGGTTTCTAAAAGCAGCTCAATTGGAAATGGCATGCCAAGTTGCTCTCAGCCAATATCTTCTTGTGGGGATTCAACGTCTACGGAAAAGAAAGCAGATGAAAGCTATACAGCAAGCGCAATTACACTTGAGAATGGTCAGCAGCAACAGCAGAATATGGGAAAATCAAGTCACCCTCTAAGTCAAGCAAGTGTGCTTTTGTCACTCATAAAGACTGGTATGAGGAAAAGCTGTGTTACAAGACAAGCATCTAGAGTGGAGATTAATGGCGACAGAAGACAATCAAGAGGATGTAACTCTTCATCCGGCAAGTCTAGTGTTGGGTCATCTTCAAATCCTTGTTATGATGTCAGGAGCTCAACATCTACATCACTGCAATACAAAGAAAGAACACCAGACAGCAGAAATATGACAAGATTAAGTATTGCAGCCAAGAACAAAGTAAAAGTTTCTAAAGCATCTAAAACATCTACTAATAAGATTGAGCAAGGGACTTCTAACTACAGAATGGAACCTAATACTGGGAAGTCTACCTATCGGCAAGCAGCAAAACCAAAGGTTCAAGTTCACACTCTCAGAAGGAAACCTTTGGCGCCAGTTAGAGTTGATGAAAACAAGTTAATTACTGCTACTATAAAGTCCAAAGAGAAACCAGTAGTTGGCGGGTCTTACAGATTGGCTGCCTCAGGGATAGAGAATGTGAAAGGACTGGCTGCATCTAATAAAAAAGAGAATATTGTGAAAGGGAAAGCCACTGGGAGTCAGACTCAGAAATGCATTAGCAAAGGTGTTGCTGCCGGAACCAATGTTACTGGTCAGAAAGGGACAAGAAATAGCATTCAGCAAGGACATGACAGAACAGTGGCTGGAAAGATTAGAATGGCCAATGAAGTTAAAGTTGTTTGCCAGATAAGACAGATGAGGGAAAGAGGCTCTCTGCTTCCAAGTGTGGTGTGGCACTGGAGGAAATTTGGAGATTTATCATTTGCTTCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

481

Amino Acids

52.57

Weight (kDa)

9.99

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1039
AccB7I	CCANNNNNTGG	1 cut(s)	1106
AccI	GTMKAC	2 cut(s)	527, 977
AciI	CCGC	1 cut(s)	1110
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	1329
AcsI	RAATTY	1 cut(s)	1415
AcyI	GRCGYC	1 cut(s)	1040
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	968, 1106
AgsI	TTSAA	6 cut(s)	53, 166, 438, 522, 780, 1010
AhdI	GACNNNNNGTC	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	7 cut(s)	56, 241, 408, 465, 552, 678, 804
AluI	AGCT	7 cut(s)	56, 241, 408, 465, 552, 678, 804
Alw21I	GWGCWC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	1313
AoxI	GGCC	2 cut(s)	201, 1329
ApeKI	GCWGC	7 cut(s)	462, 589, 875, 992, 1127, 1160, 1241
ApoI	RAATTY	1 cut(s)	1415
AseI	ATTAAT	1 cut(s)	711
AspLEI	GCGC	2 cut(s)	566, 1042
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	119, 611
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	1132
BalI	TGGCCA	1 cut(s)	1331
BanI	GGYRCC	1 cut(s)	1039
BanII	GRGCYC	1 cut(s)	806
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	806
BbvI	GCAGC	7 cut(s)	474, 601, 887, 1004, 1114, 1147, 1228
BccI	CCATC	3 cut(s)	98, 235, 253
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	308
BfaI	CTAG	3 cut(s)	258, 699, 762
BfmI	CTRYAG	1 cut(s)	949
BfoI	RGCGCY	1 cut(s)	1043
BisI	GCNGC	7 cut(s)	463, 590, 876, 993, 1128, 1161, 1242
BlsI	GCNGC	7 cut(s)	464, 591, 877, 994, 1129, 1162, 1243
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	960, 1041, 1249
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	3 cut(s)	40, 978, 1212
BmsI	GCATC	3 cut(s)	704, 914, 1172
BmuI	ACTGGG	3 cut(s)	40, 978, 1212
BpiI	GAAGAC	1 cut(s)	730
BplI	GAGNNNNNCTC	2 cut(s)	1198, 1230
BpmI	CTGGAG	1 cut(s)	1429
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	596
BsaHI	GRCGYC	1 cut(s)	1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	968, 1106
Bse21I	CCTNAGG	1 cut(s)	1132
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	743, 749
BseLI	CCNNNNNNNGG	2 cut(s)	968, 1106
BseMII	CTCAG	5 cut(s)	338, 509, 1036, 1146, 1229
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	7 cut(s)	474, 601, 887, 1004, 1114, 1147, 1228
BshFI	GGCC	2 cut(s)	203, 1331
BshNI	GGYRCC	1 cut(s)	1039
BsiHKAI	GWGCWC	1 cut(s)	806
BsiSI	CCGG	2 cut(s)	753, 1245
BslFI	GGGAC	4 cut(s)	314, 367, 952, 1285
BslI	CCNNNNNNNGG	2 cut(s)	968, 1106
BsmFI	GGGAC	4 cut(s)	314, 367, 952, 1285
BsmI	GAATGC	1 cut(s)	1284
BsnI	GGCC	2 cut(s)	203, 1331
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp143I	GATC	2 cut(s)	70, 260
BspACI	CCGC	1 cut(s)	1110
BspANI	GGCC	2 cut(s)	203, 1331
BspCNI	CTCAG	5 cut(s)	339, 508, 1035, 1145, 1228
BspLI	GGNNCC	3 cut(s)	960, 1041, 1249
BspPI	GGATC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	1039
BssMI	GATC	2 cut(s)	70, 260
BssNI	GRCGYC	1 cut(s)	1040
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	1309
Bst6I	CTCTTC	1 cut(s)	751
BstACI	GRCGYC	1 cut(s)	1040
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	482, 562, 990
BstDEI	CTNAG	6 cut(s)	347, 495, 626, 1022, 1132, 1215
BstF5I	GGATG	2 cut(s)	743, 749
BstH2I	RGCGCY	1 cut(s)	1043
BstHHI	GCGC	2 cut(s)	566, 1042
BstKTI	GATC	2 cut(s)	73, 263
BstMBI	GATC	2 cut(s)	70, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	949
BstV1I	GCAGC	7 cut(s)	474, 601, 887, 1004, 1114, 1147, 1228
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	1132
BsuRI	GGCC	2 cut(s)	203, 1331
BtsCI	GGATG	2 cut(s)	743, 749
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	5 cut(s)	28, 818, 1200, 1314, 1405
Cac8I	GCNNGC	3 cut(s)	482, 562, 990
CaiI	CAGNNNCTG	1 cut(s)	1313
CfoI	GCGC	2 cut(s)	566, 1042
Cfr13I	GGNCC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	391, 481, 1298
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	6 cut(s)	347, 495, 626, 1022, 1132, 1215
DinI	GGCGCC	1 cut(s)	1041
DpnI	GATC	2 cut(s)	72, 262
DpnII	GATC	2 cut(s)	70, 260
DriI	GACNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	1329
Eam1104I	CTCTTC	1 cut(s)	751
Eam1105I	GACNNNNNGTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	751
Ecl136II	GAGCTC	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	804
Eco81I	CCTNAGG	1 cut(s)	1132
EcoICRI	GAGCTC	1 cut(s)	804
EcoRII	CCWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	1226
EcoT38I	GRGCYC	1 cut(s)	806
EgeI	GGCGCC	1 cut(s)	1041
EheI	GGCGCC	1 cut(s)	1041
FaeI	CATG	3 cut(s)	394, 484, 1301
FalI	AAGNNNNNCTT	2 cut(s)	1018, 1050
FaqI	GGGAC	4 cut(s)	314, 367, 952, 1285
FatI	CATG	3 cut(s)	390, 480, 1297
FauI	CCCGC	1 cut(s)	1103
FblI	GTMKAC	2 cut(s)	527, 977
Fnu4HI	GCNGC	7 cut(s)	463, 590, 876, 993, 1128, 1161, 1242
FokI	GGATG	2 cut(s)	736, 750
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	7 cut(s)	463, 590, 876, 993, 1128, 1161, 1242
FspBI	CTAG	3 cut(s)	258, 699, 762
GlaI	GCGC	2 cut(s)	565, 1041
GluI	GCNGC	7 cut(s)	463, 590, 876, 993, 1128, 1161, 1242
GsuI	CTGGAG	1 cut(s)	1429
HaeII	RGCGCY	1 cut(s)	1043
HaeIII	GGCC	2 cut(s)	203, 1331
HapII	CCGG	2 cut(s)	753, 1245
HhaI	GCGC	2 cut(s)	566, 1042
Hin1I	GRCGYC	1 cut(s)	1040
Hin1II	CATG	3 cut(s)	394, 484, 1301
Hin6I	GCGC	2 cut(s)	564, 1040
HinP1I	GCGC	2 cut(s)	564, 1040
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	6 cut(s)	25, 89, 377, 518, 1207, 1213
HpaII	CCGG	2 cut(s)	753, 1245
HphI	GGTGA	2 cut(s)	119, 611
Hpy166II	GTNNAC	3 cut(s)	528, 978, 1015
Hpy188I	TCNGA	8 cut(s)	318, 348, 376, 420, 1025, 1212, 1218, 1266
Hpy188III	TCNNGA	7 cut(s)	41, 158, 258, 264, 699, 732, 799
Hpy8I	GTNNAC	3 cut(s)	528, 978, 1015
HpyAV	CCTTC	1 cut(s)	1020
HpyCH4III	ACNGT	1 cut(s)	1309
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	6 cut(s)	126, 413, 823, 875, 1163, 1224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	6 cut(s)	347, 495, 626, 1022, 1132, 1215
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	1 cut(s)	1040
Hsp92II	CATG	3 cut(s)	394, 484, 1301
HspAI	GCGC	2 cut(s)	564, 1040
KasI	GGCGCC	1 cut(s)	1039
Kzo9I	GATC	2 cut(s)	70, 260
LmnI	GCTCC	2 cut(s)	61, 801
Lsp1109I	GCAGC	7 cut(s)	474, 601, 887, 1004, 1114, 1147, 1228
LweI	GCATC	3 cut(s)	704, 914, 1172
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	3 cut(s)	258, 699, 762
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	6 cut(s)	367, 617, 648, 682, 740, 1255
MalI	GATC	2 cut(s)	72, 262
MboI	GATC	2 cut(s)	70, 260
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	806
MlsI	TGGCCA	1 cut(s)	1331
MluCI	AATT	6 cut(s)	48, 468, 567, 1068, 1415, 1441
MluNI	TGGCCA	1 cut(s)	1331
Mly113I	GGCGCC	1 cut(s)	1040
MlyI	GAGTC	2 cut(s)	1207, 1216
Mox20I	TGGCCA	1 cut(s)	1331
Mph1103I	ATGCAT	1 cut(s)	1226
MscI	TGGCCA	1 cut(s)	1331
MseI	TTAA	5 cut(s)	206, 711, 866, 1067, 1341
Msp20I	TGGCCA	1 cut(s)	1331
MspI	CCGG	2 cut(s)	753, 1245
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	1284
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	595
NarI	GGCGCC	1 cut(s)	1040
NdeII	GATC	2 cut(s)	70, 260
NlaIII	CATG	3 cut(s)	394, 484, 1301
NlaIV	GGNNCC	3 cut(s)	960, 1041, 1249
NmuCI	GTSAC	3 cut(s)	367, 617, 648
NsiI	ATGCAT	1 cut(s)	1226
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	484
PctI	GAATGC	1 cut(s)	1284
PfeI	GAWTC	4 cut(s)	25, 89, 377, 518
PflMI	CCANNNNNTGG	1 cut(s)	1106
PkrI	GCNGC	7 cut(s)	464, 591, 877, 994, 1129, 1162, 1243
PleI	GAGTC	2 cut(s)	1207, 1215
PluTI	GGCGCC	1 cut(s)	1043
PpsI	GAGTC	2 cut(s)	1207, 1215
PshBI	ATTAAT	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	960, 1041, 1249
PspPI	GGNCC	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	1240, 1272
PstNI	CAGNNNCTG	1 cut(s)	1313
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	806
SaqAI	TTAA	5 cut(s)	206, 711, 866, 1067, 1341
SatI	GCNGC	7 cut(s)	463, 590, 876, 993, 1128, 1161, 1242
Sau3AI	GATC	2 cut(s)	70, 260
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	1207, 1216
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	806
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	3 cut(s)	704, 914, 1172
SfcI	CTRYAG	1 cut(s)	949
SfoI	GGCGCC	1 cut(s)	1041
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	6 cut(s)	48, 468, 567, 1068, 1415, 1441
SsiI	CCGC	1 cut(s)	1110
SspDI	GGCGCC	1 cut(s)	1039
SspI	AATATT	1 cut(s)	1183
SspMI	CTAG	3 cut(s)	258, 699, 762
SstI	GAGCTC	1 cut(s)	806
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	1309
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	87, 92
TasI	AATT	6 cut(s)	48, 468, 567, 1068, 1415, 1441
TfiI	GAWTC	4 cut(s)	25, 89, 377, 518
Tru1I	TTAA	5 cut(s)	206, 711, 866, 1067, 1341
Tru9I	TTAA	5 cut(s)	206, 711, 866, 1067, 1341
TscAI	CASTG	5 cut(s)	35, 825, 1207, 1314, 1412
TseFI	GTSAC	3 cut(s)	367, 617, 648
TseI	GCWGC	7 cut(s)	462, 589, 875, 992, 1127, 1160, 1241
Tsp45I	GTSAC	3 cut(s)	367, 617, 648
TspDTI	ATGAA	6 cut(s)	26, 407, 561, 738, 1071, 1350
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	5 cut(s)	35, 825, 1207, 1314, 1412
Van91I	CCANNNNNTGG	1 cut(s)	1106
VpaK11BI	GGWCC	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	711
XapI	RAATTY	1 cut(s)	1415
XbaI	TCTAGA	2 cut(s)	257, 698
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1398
XmiI	GTMKAC	2 cut(s)	527, 977
XspI	CTAG	3 cut(s)	258, 699, 762
Zsp2I	ATGCAT	1 cut(s)	1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.