Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Forward (+)

30012065 .. 30016958

Gene Structure 4894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG255500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGTGGGTGGATCTCACATTAGAAGTCGATTCGAACAAGCAAGATGGTGATGATGATTGGTTTTACACAAGCCACTTGTTCCACCAATGTTCTTCTCGTGAGTTGAAGATTGCATTTTCTCATTCTGGGGAGGAGAGTACGGCCTTGAACTTTGACTTGCTAGGACCATCTTCGCCGAAGCTTCCATCTTCTGTGTCTAGATCAAGAGGCAAAAACTATGTGAGCAAGAAATGGAGAGGGGACAACCAGGTTGTTCCGATAGATAAGCGACACCCTGTCAATGTTCTGAGTGGGACATCTTCTTGCGTGACTTCGGAATCCAGTAAAAACATGAAAACCAAACCAAGCTATGCACATCTGAAAGGAACTTCCCGTTCAAAGTCAAGTTGGGTTTCTAAAAGCAGCTCAATGGGAAATGGCATGCCAAGTTGCTCTCAGCCAATATCTTCTTGTGGGGATTCAACGTCTACGGAAAAGAAAGCAGATGAAAGCAATACAGCAAGCGCAATTACACATGAGAGTGGTCAGCAGCAACAGCAGAATATGGGAAAATCAAGTCACCCTCTAAGTCAAGCAAGTGCGCTTTTGTCACTCATAAAGACTGGTATGAGGAAAAGCTGTGTTACAAGACAAGCATCTAGAGTGGAGATTATTGGCGACAGAAGACAATCAAGAGGACGTAACTCTTCATCCGGCAAGTCTAGTGTTGGGTCATCTTCAAATCCTTGTTATGATGTCAGGAGCTCAACATCTACATCAATGCAATACAAAGAAAGAACACCAGACAGCATAAATATGACAAGATTAAGTATTGCAGCCAAGAACAAAGTAAAAGTTTCTAAAGCATCTAAAACATCTACTAATAAGATTGAGCAAGGGACTTCTAACTACAGAATGGAACCTAATACTGGGAAGTCTACCTATCGGCAAGCAGCAAAACCAAAGGTTCAAGTTCACACTCTCAGAAGGAAACCTTTGGCGCCAGTTAGAGTTGATGAAAACAAGTTAGTTACTGCTACTATAAAGTCCAAAGAGAAACCAGTAGTTGGCGGGTCTTACAGATTGGCTGCCTCAGGGATAGAGAATGTGAAAGGACTGGCTGCATGTAATAAAAAAGAGAATATTGTGAAAGGGAAAGCCACTGGGAGTCGGACTCAGAAATGCAATAGCAAAGGTGTTGCTGCCAGAACCAACGTTACTGGTCAGAAAGGGACAAGAAATAGCATTCAGCAAGGACATGACAGAACAGGACTGGCTGGAAAGGAGAATATCCGTGTCAAAAGCCGTTTGGTAAGCGTGAAGGATATTTCCCAGAGACCCCATTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

48.19

Weight (kDa)

10.18

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	979
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AccI	GTMKAC	2 cut(s)	467, 917
AciI	CCGC	1 cut(s)	1050
AclI	AACGTT	1 cut(s)	1194
AclWI	GGATC	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	980
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	908, 1046
AgsI	TTSAA	6 cut(s)	106, 148, 378, 462, 720, 950
AhdI	GACNNNNNGTC	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	5 cut(s)	181, 348, 405, 618, 744
AluI	AGCT	5 cut(s)	181, 348, 405, 618, 744
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	1 cut(s)	1309
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	7 cut(s)	402, 529, 815, 932, 1067, 1100, 1181
AspLEI	GCGC	3 cut(s)	506, 583, 982
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	59, 551
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	979
BanII	GRGCYC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	7 cut(s)	414, 541, 827, 944, 1054, 1087, 1168
BccI	CCATC	3 cut(s)	38, 175, 193
BceAI	ACGGC	2 cut(s)	156, 1269
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	1309
BfaI	CTAG	4 cut(s)	161, 198, 639, 702
BfmI	CTRYAG	1 cut(s)	889
BfoI	RGCGCY	1 cut(s)	983
BisI	GCNGC	7 cut(s)	403, 530, 816, 933, 1068, 1101, 1182
BlsI	GCNGC	7 cut(s)	404, 531, 817, 934, 1069, 1102, 1183
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	900, 981
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	2 cut(s)	918, 1152
BmsI	GCATC	2 cut(s)	644, 854
BmuI	ACTGGG	2 cut(s)	918, 1152
BpiI	GAAGAC	1 cut(s)	670
BplI	GAGNNNNNCTC	2 cut(s)	1138, 1170
Bpu14I	TTCGAA	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	980
BsaI	GGTCTC	1 cut(s)	1309
Bsc4I	CCNNNNNNNGG	2 cut(s)	908, 1046
Bse1I	ACTGG	9 cut(s)	321, 607, 913, 983, 1040, 1101, 1147, 1204, 1257
Bse21I	CCTNAGG	1 cut(s)	1072
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	2 cut(s)	908, 1046
BseMII	CTCAG	5 cut(s)	278, 449, 976, 1086, 1169
BseNI	ACTGG	9 cut(s)	321, 607, 913, 983, 1040, 1101, 1147, 1204, 1257
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	7 cut(s)	414, 541, 827, 944, 1054, 1087, 1168
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	979
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	4 cut(s)	254, 307, 892, 1225
BslI	CCNNNNNNNGG	2 cut(s)	908, 1046
BsmAI	GTCTC	1 cut(s)	1309
BsmFI	GGGAC	4 cut(s)	254, 307, 892, 1225
BsmI	GAATGC	1 cut(s)	1224
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	1309
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	2 cut(s)	10, 200
BspACI	CCGC	1 cut(s)	1050
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	5 cut(s)	279, 448, 975, 1085, 1168
BspLI	GGNNCC	2 cut(s)	900, 981
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	979
BspTNI	GGTCTC	1 cut(s)	1309
BsrI	ACTGG	9 cut(s)	321, 607, 913, 983, 1040, 1101, 1147, 1204, 1257
BssMI	GATC	2 cut(s)	10, 200
BssNI	GRCGYC	1 cut(s)	980
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	691
BstACI	GRCGYC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	3 cut(s)	422, 502, 930
BstDEI	CTNAG	6 cut(s)	287, 435, 566, 962, 1072, 1155
BstF5I	GGATG	1 cut(s)	689
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	3 cut(s)	506, 583, 982
BstKTI	GATC	2 cut(s)	13, 203
BstMAI	GTCTC	1 cut(s)	1309
BstMBI	GATC	2 cut(s)	10, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	2 cut(s)	424, 1107
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	889
BstV1I	GCAGC	7 cut(s)	414, 541, 827, 944, 1054, 1087, 1168
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	1072
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	689
BtsIMutI	CAGTG	1 cut(s)	1140
Cac8I	GCNNGC	3 cut(s)	422, 502, 930
CfoI	GCGC	3 cut(s)	506, 583, 982
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	5 cut(s)	331, 421, 515, 1104, 1238
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	6 cut(s)	287, 435, 566, 962, 1072, 1155
DinI	GGCGCC	1 cut(s)	981
DpnI	GATC	2 cut(s)	12, 202
DpnII	GATC	2 cut(s)	10, 200
DriI	GACNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	691
Eam1105I	GACNNNNNGTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	691
Ecl136II	GAGCTC	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	746
Eco31I	GGTCTC	1 cut(s)	1309
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	1072
EcoICRI	GAGCTC	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	746
EgeI	GGCGCC	1 cut(s)	981
EheI	GGCGCC	1 cut(s)	981
FaeI	CATG	5 cut(s)	334, 424, 518, 1107, 1241
FalI	AAGNNNNNCTT	2 cut(s)	958, 990
FaqI	GGGAC	4 cut(s)	254, 307, 892, 1225
FatI	CATG	5 cut(s)	330, 420, 514, 1103, 1237
FauI	CCCGC	1 cut(s)	1043
FblI	GTMKAC	2 cut(s)	467, 917
Fnu4HI	GCNGC	7 cut(s)	403, 530, 816, 933, 1068, 1101, 1182
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	7 cut(s)	403, 530, 816, 933, 1068, 1101, 1182
FspBI	CTAG	4 cut(s)	161, 198, 639, 702
GlaI	GCGC	3 cut(s)	505, 582, 981
GluI	GCNGC	7 cut(s)	403, 530, 816, 933, 1068, 1101, 1182
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	693
HhaI	GCGC	3 cut(s)	506, 583, 982
Hin1I	GRCGYC	1 cut(s)	980
Hin1II	CATG	5 cut(s)	334, 424, 518, 1107, 1241
Hin6I	GCGC	3 cut(s)	504, 581, 980
HinP1I	GCGC	3 cut(s)	504, 581, 980
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	5 cut(s)	29, 317, 458, 1147, 1153
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	2 cut(s)	59, 551
Hpy166II	GTNNAC	3 cut(s)	468, 918, 955
Hpy188I	TCNGA	9 cut(s)	258, 288, 316, 360, 965, 1152, 1158, 1206, 1328
Hpy188III	TCNNGA	6 cut(s)	98, 198, 204, 639, 672, 739
Hpy8I	GTNNAC	3 cut(s)	468, 918, 955
HpyAV	CCTTC	2 cut(s)	960, 1294
HpyCH4IV	ACGT	3 cut(s)	464, 679, 1194
HpyCH4V	TGCA	6 cut(s)	113, 353, 763, 815, 1103, 1164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	6 cut(s)	287, 435, 566, 962, 1072, 1155
HpySE526I	ACGT	3 cut(s)	464, 679, 1194
Hsp92I	GRCGYC	1 cut(s)	980
Hsp92II	CATG	5 cut(s)	334, 424, 518, 1107, 1241
HspAI	GCGC	3 cut(s)	504, 581, 980
KasI	GGCGCC	1 cut(s)	979
Kzo9I	GATC	2 cut(s)	10, 200
LmnI	GCTCC	1 cut(s)	741
Lsp1109I	GCAGC	7 cut(s)	414, 541, 827, 944, 1054, 1087, 1168
LweI	GCATC	2 cut(s)	644, 854
MabI	ACCWGGT	1 cut(s)	246
MaeI	CTAG	4 cut(s)	161, 198, 639, 702
MaeII	ACGT	3 cut(s)	464, 679, 1194
MaeIII	GTNAC	7 cut(s)	307, 557, 588, 622, 680, 1009, 1195
MalI	GATC	2 cut(s)	12, 202
MboI	GATC	2 cut(s)	10, 200
MboII	GAAGA	9 cut(s)	84, 118, 162, 180, 291, 438, 675, 678, 708
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	1 cut(s)	507
Mly113I	GGCGCC	1 cut(s)	980
MlyI	GAGTC	2 cut(s)	1147, 1156
MmeI	TCCRAC	1 cut(s)	1130
MnlI	CCTC	7 cut(s)	124, 200, 230, 573, 603, 668, 1081
MseI	TTAA	1 cut(s)	806
MslI	CAYNNNNRTG	2 cut(s)	519, 794
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	1224
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	535
NarI	GGCGCC	1 cut(s)	980
NdeII	GATC	2 cut(s)	10, 200
NlaIII	CATG	5 cut(s)	334, 424, 518, 1107, 1241
NlaIV	GGNNCC	2 cut(s)	900, 981
NmuCI	GTSAC	3 cut(s)	307, 557, 588
NspI	RCATGY	2 cut(s)	424, 1107
NspV	TTCGAA	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	424
PctI	GAATGC	1 cut(s)	1224
PfeI	GAWTC	3 cut(s)	29, 317, 458
PflMI	CCANNNNNTGG	1 cut(s)	1046
PkrI	GCNGC	7 cut(s)	404, 531, 817, 934, 1069, 1102, 1183
PleI	GAGTC	2 cut(s)	1147, 1155
PluTI	GGCGCC	1 cut(s)	983
PpsI	GAGTC	2 cut(s)	1147, 1155
Psp124BI	GAGCTC	1 cut(s)	746
Psp1406I	AACGTT	1 cut(s)	1194
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	900, 981
PspPI	GGNCC	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	1180, 1212
PsuI	RGATCY	1 cut(s)	10
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	2 cut(s)	519, 794
SacI	GAGCTC	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	806
SatI	GCNGC	7 cut(s)	403, 530, 816, 933, 1068, 1101, 1182
Sau3AI	GATC	2 cut(s)	10, 200
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	1147, 1156
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	746
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	644, 854
SfcI	CTRYAG	1 cut(s)	889
SfoI	GGCGCC	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	519, 794
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	1050
SspDI	GGCGCC	1 cut(s)	979
SspI	AATATT	1 cut(s)	1123
SspMI	CTAG	4 cut(s)	161, 198, 639, 702
SstI	GAGCTC	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	246
TaiI	ACGT	3 cut(s)	467, 682, 1197
TaqI	TCGA	2 cut(s)	27, 32
TasI	AATT	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	29, 317, 458
Tru1I	TTAA	1 cut(s)	806
Tru9I	TTAA	1 cut(s)	806
TscAI	CASTG	1 cut(s)	1147
TseFI	GTSAC	3 cut(s)	307, 557, 588
TseI	GCWGC	7 cut(s)	402, 529, 815, 932, 1067, 1100, 1181
Tsp45I	GTSAC	3 cut(s)	307, 557, 588
TspDTI	ATGAA	4 cut(s)	347, 501, 678, 1011
TspGWI	ACGGA	2 cut(s)	485, 1262
TspRI	CASTG	1 cut(s)	1147
Van91I	CCANNNNNTGG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	164
XbaI	TCTAGA	2 cut(s)	197, 638
XceI	RCATGY	2 cut(s)	424, 1107
XmiI	GTMKAC	2 cut(s)	467, 917
XspI	CTAG	4 cut(s)	161, 198, 639, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.