Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

34330513 .. 34333462

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1236000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGCTTAAACTTTGACTTAGTTGGACCATCTTCGCCACAACTTCTGTCTTCTGTCTCTAAGTCAAGAGGCAAAGACTTTGTAAGCAAGAAATGGAGACGGGAAAACCAAGATTTTACAGATAAGCGGCACCTAGACAAAGTTCTGAGCGGGACATCTTCCTGTGGGAACTCAGGGTCCAGTGATGAGATGAACCCCAAATCAAGCTTCATACAGTTGAAGGGAACAACCAGTTCCAAATCAGGTTCAGTTTGTAAAAGCAGTCTAACTGGAAATCACATACCCAATTGCTCTAAGCCAACGTCCTCTGGTGGGGATCCAACATGTAGTTTTAGTTCTGTGACAAACAAGGCAAATGAAAGCAGTACAGCAAGCACCATTACATCTGAGAGTGGTCAGCAGCAACAACAGAAGTTTATGGAGAAATCAAATCCAGCATTGAGCCAAACAAATGGGATACTTTCAGTAATAAAGGCTGGTTTCAGGAAAAGCGGTATTACTAGGCCAGCAGCCAGAGTGGAGATTAATTGTGATAGAAGGAAATCAAGAGGCCGTAAATCTTCATTCAGCAAGTCTAGTGTGGGATCATCTTCTAATCCTGGTTCGAATGGCAGGACCTCGACATCTACATCAATACAGTACAAAGAAAGATCCCCAGATAGCAGGAATGTGACAAGAATGAGTTATGCAACCAAGAACAGAATAAAACCTTCTAAAGTATCCAAGTTGTCTACGCATAAGAATGAGAGAGGGACTGCAAACTACAGAATTGGACCTAATGTTTCAAAGTCAATCCACACAGAAGCTGAAAAACCAAAGGTTCAGTATCAGATTCTGAGAAGGAAACCTTTGGATTCTGTTCTAGTTAAAGAAACTAAACCAGTAACTACTGTGAAATCTAAGAAGAAACCAGTTGTTGGTGGATCTAACAGATTGGTGGCCCCAGGAAAAGAGAATTTGAAAGGGAGAATCGCTGGGAGTCAGAAATGCAATAACAAAGGCATTGCTCCTGTAACCATGGTTTGGAGTCCGAAGGGGACAAAACAGAGCATTTTGCGAAGGACCGACCGAACAGGACTGGCTGGAAAGGGGAAAGTCGGCGGTCCAAGCCATTTGTTAAGCCTGAAGGATGTTCCGAAGAGACCCCATTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

41.57

Weight (kDa)

10.65

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	129
AccB7I	CCANNNNNTGG	2 cut(s)	917, 1023
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	4 cut(s)	127, 150, 492, 1101
AclWI	GGATC	5 cut(s)	311, 324, 592, 645, 931
AcsI	RAATTY	1 cut(s)	955
AcuI	CTGAAG	1 cut(s)	1145
AfaI	GTAC	2 cut(s)	367, 641
AfiI	CCNNNNNNNGG	3 cut(s)	312, 917, 1023
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	220, 786, 961
AjnI	CCWGG	2 cut(s)	598, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	207, 806
AluI	AGCT	2 cut(s)	207, 806
Alw26I	GTCTC	3 cut(s)	61, 91, 1135
AlwI	GGATC	5 cut(s)	311, 324, 592, 645, 931
AlwNI	CAGNNNCTG	2 cut(s)	806, 835
AoxI	GGCC	3 cut(s)	503, 550, 939
ApeKI	GCWGC	2 cut(s)	400, 509
ApoI	RAATTY	1 cut(s)	955
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	7 cut(s)	26, 177, 615, 773, 940, 1062, 1103
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	6 cut(s)	26, 177, 615, 773, 1062, 1103
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	412, 521
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	2 cut(s)	600, 945
BciVI	GTATCC	2 cut(s)	450, 730
BcoDI	GTCTC	3 cut(s)	61, 91, 1135
BfaI	CTAG	4 cut(s)	134, 501, 576, 863
BfmI	CTRYAG	1 cut(s)	763
BfuI	GTATCC	2 cut(s)	450, 730
BisI	GCNGC	3 cut(s)	128, 401, 510
BlsI	GCNGC	3 cut(s)	129, 402, 511
Bme1390I	CCNGG	2 cut(s)	600, 945
Bme18I	GGWCC	6 cut(s)	26, 177, 615, 773, 1062, 1103
BmgT120I	GGNCC	7 cut(s)	26, 177, 615, 773, 940, 1062, 1103
BmiI	GGNNCC	4 cut(s)	131, 178, 318, 942
BmrFI	CCNGG	2 cut(s)	600, 945
BpiI	GAAGAC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	1135
BsaJI	CCNNGG	2 cut(s)	943, 1017
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 917, 1023
Bse1I	ACTGG	6 cut(s)	180, 231, 274, 881, 911, 1083
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	2 cut(s)	600, 945
BseDI	CCNNGG	2 cut(s)	943, 1017
BseGI	GGATG	1 cut(s)	1135
BseLI	CCNNNNNNNGG	3 cut(s)	312, 917, 1023
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	137, 186, 378, 827
BseNI	ACTGG	6 cut(s)	180, 231, 274, 881, 911, 1083
BseXI	GCAGC	2 cut(s)	412, 521
BseYI	CCCAGC	1 cut(s)	974
Bsh1285I	CGRYCG	1 cut(s)	1069
BshFI	GGCC	3 cut(s)	505, 552, 941
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	1069
BslFI	GGGAC	3 cut(s)	166, 766, 1051
BslI	CCNNNNNNNGG	3 cut(s)	312, 917, 1023
BsmAI	GTCTC	3 cut(s)	61, 91, 1135
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	3 cut(s)	166, 766, 1051
BsnI	GGCC	3 cut(s)	505, 552, 941
Bso31I	GGTCTC	1 cut(s)	1135
Bsp119I	TTCGAA	1 cut(s)	605
Bsp143I	GATC	4 cut(s)	316, 584, 650, 923
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	4 cut(s)	127, 150, 492, 1101
BspANI	GGCC	3 cut(s)	505, 552, 941
BspCNI	CTCAG	4 cut(s)	138, 185, 379, 828
BspLI	GGNNCC	4 cut(s)	131, 178, 318, 942
BspPI	GGATC	5 cut(s)	311, 324, 592, 645, 931
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	1135
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	6 cut(s)	180, 231, 274, 881, 911, 1083
BssECI	CCNNGG	2 cut(s)	943, 1017
BssMI	GATC	4 cut(s)	316, 584, 650, 923
BssT1I	CCWWGG	1 cut(s)	1017
Bst2UI	CCWGG	2 cut(s)	600, 945
Bst4CI	ACNGT	3 cut(s)	216, 639, 892
Bst6I	CTCTTC	1 cut(s)	1133
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	373, 507
BstDEI	CTNAG	8 cut(s)	19, 60, 146, 172, 294, 387, 836, 900
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	1 cut(s)	1135
BstKTI	GATC	4 cut(s)	319, 587, 653, 926
BstMAI	GTCTC	3 cut(s)	61, 91, 1135
BstMBI	GATC	4 cut(s)	316, 584, 650, 923
BstMCI	CGRYCG	1 cut(s)	1069
BstMWI	GCNNNNNNNGC	1 cut(s)	1107
BstNI	CCWGG	2 cut(s)	600, 945
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	598, 943
BstSFI	CTRYAG	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	412, 521
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	3 cut(s)	316, 650, 923
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	3 cut(s)	316, 650, 923
BsuI	GTATCC	2 cut(s)	450, 730
BsuRI	GGCC	3 cut(s)	505, 552, 941
BtgI	CCRYGG	1 cut(s)	1017
BtsCI	GGATG	1 cut(s)	1135
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	373, 507
CaiI	CAGNNNCTG	2 cut(s)	806, 835
Cfr13I	GGNCC	7 cut(s)	26, 177, 615, 773, 940, 1062, 1103
Csp6I	GTAC	2 cut(s)	366, 640
CviAII	CATG	2 cut(s)	324, 1018
CviQI	GTAC	2 cut(s)	366, 640
DdeI	CTNAG	8 cut(s)	19, 60, 146, 172, 294, 387, 836, 900
DpnI	GATC	4 cut(s)	318, 586, 652, 925
DpnII	GATC	4 cut(s)	316, 584, 650, 923
Eam1104I	CTCTTC	1 cut(s)	1133
EarI	CTCTTC	1 cut(s)	1133
Eco130I	CCWWGG	1 cut(s)	1017
Eco31I	GGTCTC	1 cut(s)	1135
Eco47I	GGWCC	6 cut(s)	26, 177, 615, 773, 1062, 1103
Eco57I	CTGAAG	1 cut(s)	1145
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	598, 943
EcoT14I	CCWWGG	1 cut(s)	1017
ErhI	CCWWGG	1 cut(s)	1017
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	327, 1021
FaiI	YATR	7 cut(s)	212, 281, 325, 419, 687, 738, 1019
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FaqI	GGGAC	3 cut(s)	166, 766, 1051
FatI	CATG	2 cut(s)	323, 1017
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	128, 401, 510
FokI	GGATG	1 cut(s)	1142
Fsp4HI	GCNGC	3 cut(s)	128, 401, 510
FspBI	CTAG	4 cut(s)	134, 501, 576, 863
GluI	GCNGC	3 cut(s)	128, 401, 510
GsaI	CCCAGC	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	505, 552, 941
Hin1II	CATG	2 cut(s)	327, 1021
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	5 cut(s)	832, 854, 969, 979, 1027
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	8 cut(s)	147, 388, 831, 837, 984, 1032, 1137, 1154
Hpy188III	TCNNGA	3 cut(s)	66, 484, 546
Hpy8I	GTNNAC	1 cut(s)	732
HpyAV	CCTTC	7 cut(s)	214, 531, 720, 834, 1027, 1053, 1120
HpyCH4III	ACNGT	3 cut(s)	216, 639, 892
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	689, 758, 990
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1107
HpyF3I	CTNAG	8 cut(s)	19, 60, 146, 172, 294, 387, 836, 900
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	327, 1021
Kzo9I	GATC	4 cut(s)	316, 584, 650, 923
LmnI	GCTCC	1 cut(s)	1012
Lsp1109I	GCAGC	2 cut(s)	412, 521
MaeI	CTAG	4 cut(s)	134, 501, 576, 863
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	4 cut(s)	340, 670, 883, 1012
MalI	GATC	4 cut(s)	318, 586, 652, 925
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	4 cut(s)	316, 584, 650, 923
MboII	GAAGA	7 cut(s)	24, 42, 150, 552, 582, 916, 1150
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	3 cut(s)	316, 650, 923
MluCI	AATT	4 cut(s)	286, 526, 768, 955
MlyI	GAGTC	2 cut(s)	988, 1036
MmeI	TCCRAC	2 cut(s)	4, 344
MnlI	CCTC	5 cut(s)	62, 316, 542, 628, 743
MseI	TTAA	4 cut(s)	8, 525, 867, 1118
MslI	CAYNNNNRTG	1 cut(s)	741
MspR9I	CCNGG	2 cut(s)	600, 945
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	600, 945
MwoI	GCNNNNNNNGC	1 cut(s)	1107
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	4 cut(s)	316, 584, 650, 923
NlaIII	CATG	2 cut(s)	327, 1021
NlaIV	GGNNCC	4 cut(s)	131, 178, 318, 942
NmuCI	GTSAC	2 cut(s)	340, 670
NspI	RCATGY	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	605
PciI	ACATGT	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	832, 854, 969
PflMI	CCANNNNNTGG	2 cut(s)	917, 1023
PkrI	GCNGC	3 cut(s)	129, 402, 511
PleI	GAGTC	2 cut(s)	987, 1035
PpsI	GAGTC	2 cut(s)	987, 1035
PpuMI	RGGWCCY	1 cut(s)	615
PscI	ACATGT	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	598, 943
PspFI	CCCAGC	1 cut(s)	974
PspGI	CCWGG	2 cut(s)	598, 943
PspN4I	GGNNCC	4 cut(s)	131, 178, 318, 942
PspPI	GGNCC	7 cut(s)	26, 177, 615, 773, 940, 1062, 1103
PspPPI	RGGWCCY	1 cut(s)	615
PsrI	GAACNNNNNNTAC	2 cut(s)	319, 351
PstNI	CAGNNNCTG	2 cut(s)	806, 835
PsuI	RGATCY	3 cut(s)	316, 650, 923
RsaI	GTAC	2 cut(s)	367, 641
RsaNI	GTAC	2 cut(s)	366, 640
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	8, 525, 867, 1118
SatI	GCNGC	3 cut(s)	128, 401, 510
Sau3AI	GATC	4 cut(s)	316, 584, 650, 923
Sau96I	GGNCC	7 cut(s)	26, 177, 615, 773, 940, 1062, 1103
SchI	GAGTC	2 cut(s)	988, 1036
ScrFI	CCNGG	2 cut(s)	600, 945
SfcI	CTRYAG	1 cut(s)	763
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	6 cut(s)	26, 177, 615, 773, 1062, 1103
SmiMI	CAYNNNNRTG	1 cut(s)	741
Sse9I	AATT	4 cut(s)	286, 526, 768, 955
SsiI	CCGC	4 cut(s)	127, 150, 492, 1101
SspMI	CTAG	4 cut(s)	134, 501, 576, 863
StyD4I	CCNGG	2 cut(s)	598, 943
StyI	CCWWGG	1 cut(s)	1017
TaaI	ACNGT	3 cut(s)	216, 639, 892
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	605, 620
TaqII	GACCGA	2 cut(s)	1079, 1083
TasI	AATT	4 cut(s)	286, 526, 768, 955
TatI	WGTACW	2 cut(s)	365, 639
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	832, 854, 969
Tru1I	TTAA	4 cut(s)	8, 525, 867, 1118
Tru9I	TTAA	4 cut(s)	8, 525, 867, 1118
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	340, 670
TseI	GCWGC	2 cut(s)	400, 509
Tsp45I	GTSAC	2 cut(s)	340, 670
TspDTI	ATGAA	4 cut(s)	199, 206, 372, 552
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	2 cut(s)	917, 1023
VpaK11BI	GGWCC	6 cut(s)	26, 177, 615, 773, 1062, 1103
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	1 cut(s)	955
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	4 cut(s)	134, 501, 576, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.