Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000382.1

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

184607 .. 188558

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000382.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

atgatgacgatgatgaagaagaatcactgggattttctggaagaaattgaagctcccatgtgggtggatctcacattagaagtcgattcgaacaagcaagatggtgatgatgattggttttacacaagccacttgttccaccaatgttcttctcgtgagttgaagattgcattttctcattctggggaggagagtacggccttgaactttgacttgctaggaccatcttcgccgaagcttccatcttctgtgtctagatcaagaggcaaaaactatgtgagcaagaaatggagaggggacaaccaggttgttccgatagataagcgacaccctgtcaatgttctgagtgggacatcttcctgcgtgacttcggaatccagtaataacatgaaaaccaaaccaagctatgcacatctgaaaggaacttcccgttcaaagtcaagttgggtttctaaaagcagctcaattggaaatggcatgccaagttgctctcagccaatatcttcttgtggggattcaatgtctacggaaaagaaagcagatgaaagcaatacagcaagcgcaattacacatgagagtggtcagcagcaacagcagaatatgggaaaatcaagtcaccctctaagtcaagcaagtgcgcttttgtcactcataaagactggtatgaggaaaagctgtgttacaagacaagcatctagagtggagattattggcgacagaagacaatcaagaggacgtaactcttcatccggcaagtctagtgttgggtcatcttcaaatccttgttatgatgtcaggagctcaacatctacatcaatgcaatacaaagaaagaacaccagacagcataaatatgacaagattaagtattgcagccaagaacaaagtaaaagtttctaaagcatctaaaacatctactaataagattgagcaagggacttctaactacagaatggaacctaatactgggaagtctacctatcggcaagcagcaaaaccaaaggttcaagttcacactctcagaaggaaacctttggcgccagttagagttgatgaaaacaagttagttactgctactataaagtccaaagagaaaccagtagttggcgggtcttacagattggctgcctcagggatagagaatgtgaaaggactggctgcatgtaataaaaaagagaatattgtgaaagggaaagccactgggagtcggactcagaaatgcaatagcaaaggtgttgctgccagaaccaacgttactggtcagaaagggacaagaaatagcattcagcaaggacatgacagaacaggactggctggaaagattagattggccaatgaagttaaagttgtttgccagataagacagatgagggaaggaggctctctgcttccaagtgtggtgtggcactggaggaaatttggagatttatcatttgcttctaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

481

Amino Acids

52.62

Weight (kDa)

10.02

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AccI	GTMKAC	2 cut(s)	524, 974
AciI	CCGC	1 cut(s)	1107
AclI	AACGTT	1 cut(s)	1251
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	1329
AcsI	RAATTY	1 cut(s)	1415
AcyI	GRCGYC	1 cut(s)	1037
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	965, 1103
AgsI	TTSAA	7 cut(s)	50, 163, 205, 435, 519, 777, 1007
AhdI	GACNNNNNGTC	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	6 cut(s)	53, 238, 405, 462, 675, 801
AluI	AGCT	6 cut(s)	53, 238, 405, 462, 675, 801
Alw21I	GWGCWC	1 cut(s)	803
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	198, 1329
ApeKI	GCWGC	7 cut(s)	459, 586, 872, 989, 1124, 1157, 1238
ApoI	RAATTY	1 cut(s)	1415
AspLEI	GCGC	3 cut(s)	563, 640, 1039
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	116, 608
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	1129
BalI	TGGCCA	1 cut(s)	1331
BanI	GGYRCC	1 cut(s)	1036
BanII	GRGCYC	1 cut(s)	803
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	803
BbvI	GCAGC	7 cut(s)	471, 598, 884, 1001, 1111, 1144, 1225
BccI	CCATC	3 cut(s)	95, 232, 250
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	305
BfaI	CTAG	4 cut(s)	218, 255, 696, 759
BfmI	CTRYAG	1 cut(s)	946
BfoI	RGCGCY	1 cut(s)	1040
BisI	GCNGC	7 cut(s)	460, 587, 873, 990, 1125, 1158, 1239
BlsI	GCNGC	7 cut(s)	461, 588, 874, 991, 1126, 1159, 1240
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	957, 1038
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	3 cut(s)	37, 975, 1209
BmsI	GCATC	2 cut(s)	701, 911
BmuI	ACTGGG	3 cut(s)	37, 975, 1209
BpiI	GAAGAC	1 cut(s)	727
BplI	GAGNNNNNCTC	2 cut(s)	1195, 1227
BpmI	CTGGAG	1 cut(s)	1429
Bpu14I	TTCGAA	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	965, 1103
Bse21I	CCTNAGG	1 cut(s)	1129
BseBI	CCWGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	746
BseLI	CCNNNNNNNGG	2 cut(s)	965, 1103
BseMII	CTCAG	5 cut(s)	335, 506, 1033, 1143, 1226
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	7 cut(s)	471, 598, 884, 1001, 1111, 1144, 1225
BshFI	GGCC	2 cut(s)	200, 1331
BshNI	GGYRCC	1 cut(s)	1036
BsiHKAI	GWGCWC	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	4 cut(s)	311, 364, 949, 1282
BslI	CCNNNNNNNGG	2 cut(s)	965, 1103
BsmFI	GGGAC	4 cut(s)	311, 364, 949, 1282
BsmI	GAATGC	1 cut(s)	1281
BsnI	GGCC	2 cut(s)	200, 1331
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp143I	GATC	2 cut(s)	67, 257
BspACI	CCGC	1 cut(s)	1107
BspANI	GGCC	2 cut(s)	200, 1331
BspCNI	CTCAG	5 cut(s)	336, 505, 1032, 1142, 1225
BspLI	GGNNCC	2 cut(s)	957, 1038
BspPI	GGATC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	1036
BssMI	GATC	2 cut(s)	67, 257
BssNI	GRCGYC	1 cut(s)	1037
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	748
BstACI	GRCGYC	1 cut(s)	1037
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	479, 559, 987
BstDEI	CTNAG	6 cut(s)	344, 492, 623, 1019, 1129, 1212
BstF5I	GGATG	1 cut(s)	746
BstH2I	RGCGCY	1 cut(s)	1040
BstHHI	GCGC	3 cut(s)	563, 640, 1039
BstKTI	GATC	2 cut(s)	70, 260
BstMBI	GATC	2 cut(s)	67, 257
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	2 cut(s)	481, 1164
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	946
BstV1I	GCAGC	7 cut(s)	471, 598, 884, 1001, 1111, 1144, 1225
BstV2I	GAAGAC	1 cut(s)	727
BstX2I	RGATCY	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	1129
BsuRI	GGCC	2 cut(s)	200, 1331
BtsCI	GGATG	1 cut(s)	746
BtsIMutI	CAGTG	3 cut(s)	25, 1197, 1405
Cac8I	GCNNGC	3 cut(s)	479, 559, 987
CfoI	GCGC	3 cut(s)	563, 640, 1039
Cfr13I	GGNCC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	6 cut(s)	58, 388, 478, 572, 1161, 1295
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	6 cut(s)	344, 492, 623, 1019, 1129, 1212
DinI	GGCGCC	1 cut(s)	1038
DpnI	GATC	2 cut(s)	69, 259
DpnII	GATC	2 cut(s)	67, 257
DriI	GACNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	1329
Eam1104I	CTCTTC	1 cut(s)	748
Eam1105I	GACNNNNNGTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	748
Ecl136II	GAGCTC	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	803
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	801
Eco81I	CCTNAGG	1 cut(s)	1129
EcoICRI	GAGCTC	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	803
EgeI	GGCGCC	1 cut(s)	1038
EheI	GGCGCC	1 cut(s)	1038
FaeI	CATG	6 cut(s)	61, 391, 481, 575, 1164, 1298
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FaqI	GGGAC	4 cut(s)	311, 364, 949, 1282
FatI	CATG	6 cut(s)	57, 387, 477, 571, 1160, 1294
FauI	CCCGC	1 cut(s)	1100
FblI	GTMKAC	2 cut(s)	524, 974
Fnu4HI	GCNGC	7 cut(s)	460, 587, 873, 990, 1125, 1158, 1239
FokI	GGATG	1 cut(s)	733
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	7 cut(s)	460, 587, 873, 990, 1125, 1158, 1239
FspBI	CTAG	4 cut(s)	218, 255, 696, 759
GlaI	GCGC	3 cut(s)	562, 639, 1038
GluI	GCNGC	7 cut(s)	460, 587, 873, 990, 1125, 1158, 1239
GsuI	CTGGAG	1 cut(s)	1429
HaeII	RGCGCY	1 cut(s)	1040
HaeIII	GGCC	2 cut(s)	200, 1331
HapII	CCGG	1 cut(s)	750
HhaI	GCGC	3 cut(s)	563, 640, 1039
Hin1I	GRCGYC	1 cut(s)	1037
Hin1II	CATG	6 cut(s)	61, 391, 481, 575, 1164, 1298
Hin6I	GCGC	3 cut(s)	561, 638, 1037
HinP1I	GCGC	3 cut(s)	561, 638, 1037
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	6 cut(s)	22, 86, 374, 515, 1204, 1210
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	2 cut(s)	116, 608
Hpy166II	GTNNAC	3 cut(s)	525, 975, 1012
Hpy188I	TCNGA	8 cut(s)	315, 345, 373, 417, 1022, 1209, 1215, 1263
Hpy188III	TCNNGA	7 cut(s)	38, 155, 255, 261, 696, 729, 796
Hpy8I	GTNNAC	3 cut(s)	525, 975, 1012
HpyAV	CCTTC	2 cut(s)	1017, 1367
HpyCH4IV	ACGT	2 cut(s)	736, 1251
HpyCH4V	TGCA	6 cut(s)	170, 410, 820, 872, 1160, 1221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	6 cut(s)	344, 492, 623, 1019, 1129, 1212
HpySE526I	ACGT	2 cut(s)	736, 1251
Hsp92I	GRCGYC	1 cut(s)	1037
Hsp92II	CATG	6 cut(s)	61, 391, 481, 575, 1164, 1298
HspAI	GCGC	3 cut(s)	561, 638, 1037
KasI	GGCGCC	1 cut(s)	1036
Kzo9I	GATC	2 cut(s)	67, 257
LmnI	GCTCC	2 cut(s)	58, 798
Lsp1109I	GCAGC	7 cut(s)	471, 598, 884, 1001, 1111, 1144, 1225
LweI	GCATC	2 cut(s)	701, 911
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	4 cut(s)	218, 255, 696, 759
MaeII	ACGT	2 cut(s)	736, 1251
MaeIII	GTNAC	7 cut(s)	364, 614, 645, 679, 737, 1066, 1252
MalI	GATC	2 cut(s)	69, 259
MboI	GATC	2 cut(s)	67, 257
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	803
MlsI	TGGCCA	1 cut(s)	1331
MluCI	AATT	5 cut(s)	45, 465, 564, 1415, 1441
MluNI	TGGCCA	1 cut(s)	1331
Mly113I	GGCGCC	1 cut(s)	1037
MlyI	GAGTC	2 cut(s)	1204, 1213
MmeI	TCCRAC	1 cut(s)	1187
Mox20I	TGGCCA	1 cut(s)	1331
MscI	TGGCCA	1 cut(s)	1331
MseI	TTAA	2 cut(s)	863, 1341
MslI	CAYNNNNRTG	3 cut(s)	62, 576, 851
Msp20I	TGGCCA	1 cut(s)	1331
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	1281
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	592
NarI	GGCGCC	1 cut(s)	1037
NdeII	GATC	2 cut(s)	67, 257
NlaIII	CATG	6 cut(s)	61, 391, 481, 575, 1164, 1298
NlaIV	GGNNCC	2 cut(s)	957, 1038
NmuCI	GTSAC	3 cut(s)	364, 614, 645
NspI	RCATGY	2 cut(s)	481, 1164
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	1281
PfeI	GAWTC	4 cut(s)	22, 86, 374, 515
PflMI	CCANNNNNTGG	1 cut(s)	1103
PkrI	GCNGC	7 cut(s)	461, 588, 874, 991, 1126, 1159, 1240
PleI	GAGTC	2 cut(s)	1204, 1212
PluTI	GGCGCC	1 cut(s)	1040
PpsI	GAGTC	2 cut(s)	1204, 1212
Psp124BI	GAGCTC	1 cut(s)	803
Psp1406I	AACGTT	1 cut(s)	1251
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	957, 1038
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	1237, 1269
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	3 cut(s)	62, 576, 851
SacI	GAGCTC	1 cut(s)	803
SaqAI	TTAA	2 cut(s)	863, 1341
SatI	GCNGC	7 cut(s)	460, 587, 873, 990, 1125, 1158, 1239
Sau3AI	GATC	2 cut(s)	67, 257
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	1204, 1213
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	803
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	2 cut(s)	701, 911
SfcI	CTRYAG	1 cut(s)	946
SfoI	GGCGCC	1 cut(s)	1038
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	3 cut(s)	62, 576, 851
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	5 cut(s)	45, 465, 564, 1415, 1441
SsiI	CCGC	1 cut(s)	1107
SspDI	GGCGCC	1 cut(s)	1036
SspI	AATATT	1 cut(s)	1180
SspMI	CTAG	4 cut(s)	218, 255, 696, 759
SstI	GAGCTC	1 cut(s)	803
StyD4I	CCNGG	1 cut(s)	303
TaiI	ACGT	2 cut(s)	739, 1254
TaqI	TCGA	2 cut(s)	84, 89
TasI	AATT	5 cut(s)	45, 465, 564, 1415, 1441
TfiI	GAWTC	4 cut(s)	22, 86, 374, 515
Tru1I	TTAA	2 cut(s)	863, 1341
Tru9I	TTAA	2 cut(s)	863, 1341
TscAI	CASTG	3 cut(s)	32, 1204, 1412
TseFI	GTSAC	3 cut(s)	364, 614, 645
TseI	GCWGC	7 cut(s)	459, 586, 872, 989, 1124, 1157, 1238
Tsp45I	GTSAC	3 cut(s)	364, 614, 645
TspDTI	ATGAA	6 cut(s)	29, 404, 558, 735, 1068, 1350
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	32, 1204, 1412
Van91I	CCANNNNNTGG	1 cut(s)	1103
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	1415
XbaI	TCTAGA	2 cut(s)	254, 695
XceI	RCATGY	2 cut(s)	481, 1164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1398
XmiI	GTMKAC	2 cut(s)	524, 974
XspI	CTAG	4 cut(s)	218, 255, 696, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.