Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Reverse (-)

14129047 .. 14131114

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGGTCTCCAGAGACTTCCACTTGAGTTCATTACAATTACCCGCACCAAACCCAGAACGCAGCGATAGCGAAGAGAGACAGTGTAAGCGATTGAAACCAGATCAAGGTAGTTCATATACCCACAGATCAGTACTATCTCAGCTGCGTCCTTCATATGAATCTTTTCAAACTCCCAAGTCTTATGACACATCTAAGCTCCCCTCTGGGTGGTTGGATTGCTCATCGTTTGGTGAAGAGCTAGATTGCATGATACCTTCTAAAATGCCACTAGGTGAATCCTACAATGTCTTTGTTCCTCATGGTAAGAGATACTCATTCAAGCAAGTGATTGAGGCACAGAGATGTCGGCGAAGAAAACTCGGTTTGGTTATCGATTTGACCAACACAACTCATTACTATCGGACGTGTGATTTGGTGAAAATGGGTATCAAGCATGTCAGGATTAATCCATGCAATGGCCGGAATTCTGTACCGGACAACTTTTCGGTGAATCGTTTCGTATACGAGGTTATGCGATTCAAAGAGTACTACCCAGAGAAGTATATCCTTGTGCATTGTACACATGGACACAATCGCACAGGGTACATGATCATACATTACTTGATGCGCACGCAACCAATGAGGACGGTCACTCAAGCAATAAAAGATTTTGCTCAAGCGCGTCCTCCGGGAATATATAAACCTGACTACATCAATGCATTGTACTCATTCTATCATGAAATGAAGCCTGTGGAATTTGTTTGCCCACCTTCTCCTGAGTGGAAGAGATCTTCGGAATTTGTGCCAGACGACAATGATCAAATTTTGAAAAATAGTCATCAGGATAGGGATACAGATGGTGTAGTAATAACTAATGATGATATCCTGGGTGACGATATACCTGATGATCAGCAAGAGGAACTGCGGAGGTTGTGCTACAAACTTCTTAAGGCCTTTCCCAGGGTAAGAGGAAGATGGCAATTCCCAGGGTCACACCCAGTTTCTCTTAACTGGGAGAATCTACAGTTGTTGAGGCAACAGTCTTACTATGCCACTTGGAAAGCTGATGGAACCCGTTATATGATGTTAATAACTATACATGGATGTTACTTGATTGATAGAAGCTTCAATTTTAGGAGGGTTCAAATGAGGTTTCCCCGCAAACACTTAAATGGTTCTACTGAGAAGAGTACTCACCACTGCACGTTACTAGACGGGGAGATGGTGATCGATACTGAGCACCTGCCAGGTCCACAGAAGAAGCAGACCAGAAGATACCTTGTTTATGATATGATGGCACTCAACAACGGTTCTGTGGTAGAGTGGCCTTTTCAGGAGCGGTCGAAGAAGATTGAGGAGCAAGTAATTGAGCCTCGGACTAATGACCAGCGCCGAGTTTTCGAAAGTAGGAGCAATAATCCTGACTACAGATATGACTTGGAACCATTCAGGGTGAGGATGAAGGGCTTTTGGCCACTCTCTAAGGTGAAGAAGATTTTGAAGGAGTTCATCCCAAAGCTTTCACATGATGCAGATGGCGTGATCTTTCAGGGTATGGACGATCCTTATGTTATCAGAAAACATGAACGCCTTGTGAAGTGGAAATACCCGGAAATGAACTCGGTTGATTTTCTTTTCGAGGTAGGTGGTGATGGTCGGCAACTGCTTTATCTGTATGCATATGGAGAAAAGCAACTAATGAAAGGAGAGAGGGTTGCATTTAAGGATAGTTCGGAACACTACTCTTTTTATTCGGGAAAAATAATAGAGTGTTTTCGGGATTCTGAGAAAAAAGAATGGGTCTACATGCGGAGCAGGACAGATAAATCGACTCCAAATGATGTAGAGACCTACAAAAAGGTAAAGAAAAGCATAGAGGACAATATCACGGAGGACGTCTTACTGAAGGAGATAGATAACATCATTCTTCTGCCTATATGTATGTTGAGCAGCATGCAAATTCAGCACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

650

Amino Acids

76.74

Weight (kDa)

8.86

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	116 - 238	2.5e-10	Dual specificity phosphatase, catalytic domain
mRNA_cap_enzyme	PF01331	325 - 528	1.5e-63	mRNA capping enzyme, catalytic domain
mRNA_cap_C	PF03919	564 - 628	1.4e-16	mRNA capping enzyme, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1230
AatII	GACGTC	1 cut(s)	1878
Acc16I	TGCGCA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	1230
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	1318
AccI	GTMKAC	2 cut(s)	501, 1782
AccII	CGCG	1 cut(s)	661
AciI	CCGC	5 cut(s)	42, 904, 1138, 1318, 1789
AclWI	GGATC	1 cut(s)	1535
AcoI	YGGCCR	2 cut(s)	457, 1451
AcsI	RAATTY	5 cut(s)	463, 734, 776, 801, 1938
AcuI	CTGAAG	1 cut(s)	1904
AcyI	GRCGYC	1 cut(s)	1875
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	7 cut(s)	132, 471, 527, 559, 584, 704, 1171
AfiI	CCNNNNNNNGG	4 cut(s)	104, 207, 455, 939
AflII	CTTAAG	1 cut(s)	926
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	8 cut(s)	94, 167, 319, 520, 808, 1108, 1124, 1480
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	4 cut(s)	864, 938, 964, 1225
AluBI	AGCT	6 cut(s)	142, 196, 238, 1043, 1104, 1498
AluI	AGCT	6 cut(s)	142, 196, 238, 1043, 1104, 1498
Alw21I	GWGCWC	1 cut(s)	1221
Alw26I	GTCTC	4 cut(s)	6, 10, 70, 1820
AlwI	GGATC	1 cut(s)	1535
AoxI	GGCC	4 cut(s)	457, 930, 1304, 1451
ApeKI	GCWGC	3 cut(s)	60, 142, 1929
ApoI	RAATTY	5 cut(s)	463, 734, 776, 801, 1938
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	3 cut(s)	162, 494, 1484
AspLEI	GCGC	3 cut(s)	609, 661, 1371
AspS9I	GGNCC	1 cut(s)	1229
AsuC2I	CCSGG	2 cut(s)	669, 1589
AsuII	TTCGAA	1 cut(s)	1380
AvaII	GGWCC	1 cut(s)	1229
BalI	TGGCCA	1 cut(s)	1453
BarI	GAAGNNNNNNTAC	2 cut(s)	1568, 1600
Bbv12I	GWGCWC	1 cut(s)	1221
BbvI	GCAGC	3 cut(s)	72, 129, 1941
BccI	CCATC	7 cut(s)	830, 948, 1040, 1195, 1267, 1508, 1625
BciT130I	CCWGG	4 cut(s)	866, 940, 966, 1227
BciVI	GTATCC	1 cut(s)	823
BclI	TGATCA	3 cut(s)	588, 796, 886
BcnI	CCSGG	2 cut(s)	669, 1589
BcoDI	GTCTC	4 cut(s)	6, 10, 70, 1820
BfaI	CTAG	3 cut(s)	239, 269, 1190
BfmI	CTRYAG	2 cut(s)	1001, 1405
BfoI	RGCGCY	1 cut(s)	1372
BfrI	CTTAAG	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	1230
BfuI	GTATCC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	767
BisI	GCNGC	3 cut(s)	61, 143, 1930
BlsI	GCNGC	3 cut(s)	62, 144, 1931
BmcAI	AGTACT	3 cut(s)	132, 527, 1171
Bme1390I	CCNGG	6 cut(s)	669, 866, 940, 966, 1227, 1589
Bme18I	GGWCC	1 cut(s)	1229
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	1229
BmiI	GGNNCC	2 cut(s)	1051, 1422
BmrFI	CCNGG	6 cut(s)	669, 866, 940, 966, 1227, 1589
BmrI	ACTGGG	2 cut(s)	971, 1000
BmsI	GCATC	2 cut(s)	594, 1498
BmuI	ACTGGG	2 cut(s)	971, 1000
Bpu14I	TTCGAA	1 cut(s)	1380
BpuEI	CTTGAG	3 cut(s)	43, 618, 639
BpuMI	CCSGG	2 cut(s)	669, 1589
Bsa29I	ATCGAT	2 cut(s)	372, 1209
BsaBI	GATNNNNATC	1 cut(s)	1205
BsaHI	GRCGYC	1 cut(s)	1875
BsaI	GGTCTC	2 cut(s)	10, 1820
BsaJI	CCNNGG	6 cut(s)	865, 938, 939, 964, 965, 1352
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	1677, 1707
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 207, 455, 939
Bse1I	ACTGG	2 cut(s)	977, 995
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	1205
BseBI	CCWGG	4 cut(s)	866, 940, 966, 1227
BseCI	ATCGAT	2 cut(s)	372, 1209
BseDI	CCNNGG	6 cut(s)	865, 938, 939, 964, 965, 1352
BseGI	GGATG	3 cut(s)	1088, 1443, 1488
BseJI	GATNNNNATC	1 cut(s)	1205
BseLI	CCNNNNNNNGG	4 cut(s)	104, 207, 455, 939
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	5 cut(s)	152, 747, 1152, 1206, 1755
BseNI	ACTGG	2 cut(s)	977, 995
BseRI	GAGGAG	1 cut(s)	1349
BseXI	GCAGC	3 cut(s)	72, 129, 1941
BsgI	GTGCAG	1 cut(s)	1165
Bsh1236I	CGCG	1 cut(s)	661
Bsh1285I	CGRYCG	1 cut(s)	1322
BshFI	GGCC	4 cut(s)	459, 932, 1306, 1453
BshVI	ATCGAT	2 cut(s)	372, 1209
BsiEI	CGRYCG	1 cut(s)	1322
BsiHKAI	GWGCWC	1 cut(s)	1221
BsiSI	CCGG	4 cut(s)	460, 473, 668, 1589
BslI	CCNNNNNNNGG	4 cut(s)	104, 207, 455, 939
BsmAI	GTCTC	4 cut(s)	6, 10, 70, 1820
BsnI	GGCC	4 cut(s)	459, 932, 1306, 1453
Bso31I	GGTCTC	2 cut(s)	10, 1820
Bsp119I	TTCGAA	1 cut(s)	1380
Bsp1286I	GDGCHC	1 cut(s)	1221
Bsp1407I	TGTACA	1 cut(s)	557
Bsp143I	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
BspACI	CCGC	5 cut(s)	42, 904, 1138, 1318, 1789
BspANI	GGCC	4 cut(s)	459, 932, 1306, 1453
BspCNI	CTCAG	5 cut(s)	151, 748, 1153, 1207, 1756
BspDI	ATCGAT	2 cut(s)	372, 1209
BspFNI	CGCG	1 cut(s)	661
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	1051, 1422
BspMI	ACCTGC	1 cut(s)	1230
BspPI	GGATC	1 cut(s)	1535
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	1380
BspTI	CTTAAG	1 cut(s)	926
BspTNI	GGTCTC	2 cut(s)	10, 1820
BsrBI	CCGCTC	1 cut(s)	1318
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	977, 995
BssECI	CCNNGG	6 cut(s)	865, 938, 939, 964, 965, 1352
BssMI	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
BssNAI	GTATAC	1 cut(s)	502
BssNI	GRCGYC	1 cut(s)	1875
Bst1107I	GTATAC	1 cut(s)	502
Bst2UI	CCWGG	4 cut(s)	866, 940, 966, 1227
Bst4CI	ACNGT	6 cut(s)	81, 628, 1005, 1020, 1289, 1949
Bst6I	CTCTTC	4 cut(s)	66, 228, 758, 1160
BstACI	GRCGYC	1 cut(s)	1875
BstAFI	CTTAAG	1 cut(s)	926
BstAUI	TGTACA	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	1380
BstC8I	GCNNGC	2 cut(s)	611, 1934
BstDEI	CTNAG	7 cut(s)	138, 192, 756, 1161, 1215, 1461, 1764
BstENI	CCTNNNNNAGG	1 cut(s)	937
BstF5I	GGATG	3 cut(s)	1088, 1443, 1488
BstFNI	CGCG	1 cut(s)	661
BstH2I	RGCGCY	1 cut(s)	1372
BstHHI	GCGC	3 cut(s)	609, 661, 1371
BstKTI	GATC	9 cut(s)	103, 128, 591, 770, 799, 889, 1209, 1524, 1543
BstMAI	GTCTC	4 cut(s)	6, 10, 70, 1820
BstMBI	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
BstMCI	CGRYCG	1 cut(s)	1322
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 1942
BstNI	CCWGG	4 cut(s)	866, 940, 966, 1227
BstNSI	RCATGY	3 cut(s)	437, 1789, 1936
BstSCI	CCNGG	6 cut(s)	667, 864, 938, 964, 1225, 1587
BstSFI	CTRYAG	2 cut(s)	1001, 1405
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	72, 129, 1941
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BstZ17I	GTATAC	1 cut(s)	502
Bsu15I	ATCGAT	2 cut(s)	372, 1209
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	4 cut(s)	459, 932, 1306, 1453
BsuTUI	ATCGAT	2 cut(s)	372, 1209
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	1088, 1443, 1488
BtsI	GCAGTG	1 cut(s)	1177
BtsIMutI	CAGTG	2 cut(s)	86, 1177
BveI	ACCTGC	1 cut(s)	1230
Cac8I	GCNNGC	2 cut(s)	611, 1934
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	3 cut(s)	609, 661, 1371
Cfr13I	GGNCC	1 cut(s)	1229
ClaI	ATCGAT	2 cut(s)	372, 1209
CseI	GACGC	2 cut(s)	134, 650
Csp6I	GTAC	7 cut(s)	131, 470, 526, 558, 583, 703, 1170
CviQI	GTAC	7 cut(s)	131, 470, 526, 558, 583, 703, 1170
DdeI	CTNAG	7 cut(s)	138, 192, 756, 1161, 1215, 1461, 1764
DpnI	GATC	9 cut(s)	102, 127, 590, 769, 798, 888, 1208, 1523, 1542
DpnII	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
DraIII	CACNNNGTG	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	457, 1451
Eam1104I	CTCTTC	4 cut(s)	66, 228, 758, 1160
EarI	CTCTTC	4 cut(s)	66, 228, 758, 1160
Eco147I	AGGCCT	1 cut(s)	932
Eco31I	GGTCTC	2 cut(s)	10, 1820
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	1229
Eco57I	CTGAAG	1 cut(s)	1904
EcoNI	CCTNNNNNAGG	1 cut(s)	937
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	4 cut(s)	864, 938, 964, 1225
EcoRV	GATATC	1 cut(s)	862
EcoT22I	ATGCAT	2 cut(s)	700, 1660
FauI	CCCGC	2 cut(s)	49, 1145
FauNDI	CATATG	2 cut(s)	154, 1660
FbaI	TGATCA	3 cut(s)	588, 796, 886
FblI	GTMKAC	2 cut(s)	501, 1782
Fnu4HI	GCNGC	3 cut(s)	61, 143, 1930
FokI	GGATG	3 cut(s)	1095, 1450, 1475
Fsp4HI	GCNGC	3 cut(s)	61, 143, 1930
FspAI	RTGCGCAY	1 cut(s)	608
FspBI	CTAG	3 cut(s)	239, 269, 1190
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	3 cut(s)	608, 660, 1370
GluI	GCNGC	3 cut(s)	61, 143, 1930
HaeII	RGCGCY	1 cut(s)	1372
HaeIII	GGCC	4 cut(s)	459, 932, 1306, 1453
HapII	CCGG	4 cut(s)	460, 473, 668, 1589
HgaI	GACGC	2 cut(s)	134, 650
HhaI	GCGC	3 cut(s)	609, 661, 1371
Hin1I	GRCGYC	1 cut(s)	1875
Hin6I	GCGC	3 cut(s)	607, 659, 1369
HinP1I	GCGC	3 cut(s)	607, 659, 1369
HindIII	AAGCTT	2 cut(s)	1102, 1496
HinfI	GANTC	7 cut(s)	158, 275, 490, 516, 997, 1760, 1810
HpaII	CCGG	4 cut(s)	460, 473, 668, 1589
Hpy166II	GTNNAC	4 cut(s)	502, 560, 1232, 1783
Hpy188I	TCNGA	6 cut(s)	402, 775, 1356, 1556, 1714, 1765
Hpy188III	TCNNGA	9 cut(s)	9, 439, 716, 755, 821, 1313, 1400, 1734, 1757
Hpy8I	GTNNAC	4 cut(s)	502, 560, 1232, 1783
HpyAV	CCTTC	6 cut(s)	159, 264, 759, 1435, 1474, 1879
HpyCH4III	ACNGT	6 cut(s)	81, 628, 1005, 1020, 1289, 1949
HpyCH4IV	ACGT	3 cut(s)	404, 1184, 1875
HpyCH4V	TGCA	9 cut(s)	246, 453, 553, 698, 1182, 1511, 1658, 1697, 1936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 1942
HpyF3I	CTNAG	7 cut(s)	138, 192, 756, 1161, 1215, 1461, 1764
HpySE526I	ACGT	3 cut(s)	404, 1184, 1875
Hsp92I	GRCGYC	1 cut(s)	1875
HspAI	GCGC	3 cut(s)	607, 659, 1369
Ksp22I	TGATCA	3 cut(s)	588, 796, 886
Kzo9I	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	5 cut(s)	201, 1315, 1336, 1389, 1791
Lsp1109I	GCAGC	3 cut(s)	72, 129, 1941
LweI	GCATC	2 cut(s)	594, 1498
MaeI	CTAG	3 cut(s)	239, 269, 1190
MaeII	ACGT	3 cut(s)	404, 1184, 1875
MaeIII	GTNAC	5 cut(s)	628, 869, 969, 1085, 1185
MalI	GATC	9 cut(s)	102, 127, 590, 769, 798, 888, 1208, 1523, 1542
MbiI	CCGCTC	1 cut(s)	1318
MboI	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	1221
MlsI	TGGCCA	1 cut(s)	1453
MluCI	AATT	9 cut(s)	35, 463, 734, 776, 801, 959, 1108, 1344, 1938
MluNI	TGGCCA	1 cut(s)	1453
MlyI	GAGTC	1 cut(s)	1804
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	1 cut(s)	1453
Mph1103I	ATGCAT	2 cut(s)	700, 1660
MroXI	GAANNNNTTC	3 cut(s)	162, 494, 1484
MscI	TGGCCA	1 cut(s)	1453
MseI	TTAA	6 cut(s)	444, 927, 987, 1067, 1148, 1701
MslI	CAYNNNNRTG	2 cut(s)	340, 1149
Msp20I	TGGCCA	1 cut(s)	1453
MspA1I	CMGCKG	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	4 cut(s)	460, 473, 668, 1589
MspR9I	CCNGG	6 cut(s)	669, 866, 940, 966, 1227, 1589
MvaI	CCWGG	4 cut(s)	866, 940, 966, 1227
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	2 cut(s)	66, 1942
NciI	CCSGG	2 cut(s)	669, 1589
NdeI	CATATG	2 cut(s)	154, 1660
NdeII	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
NlaIV	GGNNCC	2 cut(s)	1051, 1422
NmeAIII	GCCGAG	1 cut(s)	1397
NmuCI	GTSAC	3 cut(s)	628, 869, 969
NsbI	TGCGCA	1 cut(s)	608
NsiI	ATGCAT	2 cut(s)	700, 1660
NspI	RCATGY	3 cut(s)	437, 1789, 1936
NspV	TTCGAA	1 cut(s)	1380
PaeI	GCATGC	1 cut(s)	1936
PagI	TCATGA	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	1230
PasI	CCCWGGG	2 cut(s)	939, 965
PceI	AGGCCT	1 cut(s)	932
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	3 cut(s)	162, 494, 1484
PfeI	GAWTC	6 cut(s)	158, 275, 490, 516, 997, 1760
PflMI	CCANNNNNTGG	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	62, 144, 1931
PleI	GAGTC	1 cut(s)	1804
PpsI	GAGTC	1 cut(s)	1804
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	864, 938, 964, 1225
PspGI	CCWGG	4 cut(s)	864, 938, 964, 1225
PspN4I	GGNNCC	2 cut(s)	1051, 1422
PspPI	GGNCC	1 cut(s)	1229
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	7 cut(s)	132, 471, 527, 559, 584, 704, 1171
RsaNI	GTAC	7 cut(s)	131, 470, 526, 558, 583, 703, 1170
RseI	CAYNNNNRTG	2 cut(s)	340, 1149
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	6 cut(s)	444, 927, 987, 1067, 1148, 1701
SatI	GCNGC	3 cut(s)	61, 143, 1930
Sau3AI	GATC	9 cut(s)	100, 125, 588, 767, 796, 886, 1206, 1521, 1540
Sau96I	GGNCC	1 cut(s)	1229
ScaI	AGTACT	3 cut(s)	132, 527, 1171
SchI	GAGTC	1 cut(s)	1804
ScrFI	CCNGG	6 cut(s)	669, 866, 940, 966, 1227, 1589
SduI	GDGCHC	1 cut(s)	1221
SfaNI	GCATC	2 cut(s)	594, 1498
SfcI	CTRYAG	2 cut(s)	1001, 1405
SfuI	TTCGAA	1 cut(s)	1380
SinI	GGWCC	1 cut(s)	1229
SmiMI	CAYNNNNRTG	2 cut(s)	340, 1149
SmlI	CTYRAG	4 cut(s)	22, 633, 654, 926
SmoI	CTYRAG	4 cut(s)	22, 633, 654, 926
SphI	GCATGC	1 cut(s)	1936
Sse9I	AATT	9 cut(s)	35, 463, 734, 776, 801, 959, 1108, 1344, 1938
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	5 cut(s)	42, 904, 1138, 1318, 1789
SspMI	CTAG	3 cut(s)	239, 269, 1190
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	6 cut(s)	667, 864, 938, 964, 1225, 1587
TaaI	ACNGT	6 cut(s)	81, 628, 1005, 1020, 1289, 1949
TaiI	ACGT	3 cut(s)	407, 1187, 1878
TaqI	TCGA	6 cut(s)	372, 1209, 1322, 1380, 1617, 1808
TasI	AATT	9 cut(s)	35, 463, 734, 776, 801, 959, 1108, 1344, 1938
TatI	WGTACW	5 cut(s)	130, 525, 557, 702, 1169
TfiI	GAWTC	6 cut(s)	158, 275, 490, 516, 997, 1760
Tru1I	TTAA	6 cut(s)	444, 927, 987, 1067, 1148, 1701
Tru9I	TTAA	6 cut(s)	444, 927, 987, 1067, 1148, 1701
TscAI	CASTG	2 cut(s)	86, 1184
TseFI	GTSAC	3 cut(s)	628, 869, 969
TseI	GCWGC	3 cut(s)	60, 142, 1929
Tsp45I	GTSAC	3 cut(s)	628, 869, 969
TspGWI	ACGGA	1 cut(s)	1883
TspRI	CASTG	2 cut(s)	86, 1184
Van91I	CCANNNNNTGG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	1229
VspI	ATTAAT	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	937
XapI	RAATTY	5 cut(s)	463, 734, 776, 801, 1938
XceI	RCATGY	3 cut(s)	437, 1789, 1936
XmiI	GTMKAC	2 cut(s)	501, 1782
XmnI	GAANNNNTTC	3 cut(s)	162, 494, 1484
XspI	CTAG	3 cut(s)	239, 269, 1190
ZraI	GACGTC	1 cut(s)	1876
ZrmI	AGTACT	3 cut(s)	132, 527, 1171
Zsp2I	ATGCAT	2 cut(s)	700, 1660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.