Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006922

Physical Location & Seq

Genomic Coordinates Forward (+)

30361433 .. 30366794

Gene Structure 5362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033662

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAATGCTATAGGAATTGGAGCCCATCCGCCTAAGGCTTTCGGAGCACTCCTTGCGATCGCGTCAGAAGAAATTGAAGCTCCTATGTGGGTGGATCTCACATTAGAAGTCGATTCGAACAAGCAAAATGGTGATGATGATTGGTTTTACACAAGCCACTTGTTCCACCAATGTTCTTCTCGTGAGTTGAAGATTGCATTTTCTCATTCTGGGGAGGAGAGTACGGCCTTAAACTTGGACTTACTTGGACCATCTTCGCCAAAGCTTCCATCTTCTGTGTCTAGATCAAGAGGCAAAAACTATGTGAGCAAGAAATGGAGAGGGGACAACCAGGTTGTTCCGATAGATAAGCGACACCCTGTCAATGTTCTGAGTGGGACATCTTCCTGCGTGACTTCGGAATCCAGTAATAACATGAAAACCAAACCAAGCTATGCACATCTGAAAGGAACTTCCCGTTCAAAGTCAAGTTGGGTTTCTAAAAGCAGCTCAATTGGAAATGGCATGCCAAGTTGCTCTCAGCCAATATCTTCTTGTGGGGATTCAACGTCTACGGAAAAGAAAGCAGATGAAAGCAATACAGCAAGCGCAATTACACATGAGAGTGGTCCACAGCAACAGCAGAATATGGGAAACTCAAGTCATCCTGTAAGTCAAGCAAGTGCGCTTTTGTCACTCATAAAGACTGGTATGAGGAAAAGCTGTGTCACAAGACCAGCATCTAGAGTGGAGATCAATGGCGACAGAAGACAATCAAGAGGACGTAACTCTTCATCCGGCAAGTCTAGTGTTGGGTCATCTTCAAATCCTTGTTATGATGTCAGGAGCTCAACATCTACATCAATGCAATACAAAGAAAGAACACCAGACAACAGAAATATGACAAGATTAAGTATTGCAGCCAAGAACAAAGTAAAAGTTTCTAAAGCGTCTAAAACATCTACTAATAAGATTGAGCAAGGGACTTCTAACTACAGAATGGAACCTAATACCGGGAAGTCTACCTATCGGCAAGCAGCAAAACCAAAGGTTCAAGTTCAGACTCTCAGAAGGAAACCTTTGGCTCCAGTTAGAGTTGATGAAAACAAGTTAATTACTGCTACTATGAAGTCCAAAGAGAAACCAGTAGTTGGCGGGTCTTACAGATTGGCTGCCTCAGGGATAGAGAATGTGAAAGGGCTGGCTGCATCTAATAAAAAAGAGAATATTGTGAAAGGGAAAGCCACTGGGAGTCGGACTCAGAAATGCAATAGCAAAGGTGTTGCTGCTGGAACCAATGTTACTGGTCAAAAAGGGACAAGAACTAGCATTCAGCAAGGACACGACAGAACAGGACTGGCTGGAAAGGAGAATATCTGTGTCAAAAGCCGTTTGAAATTCTCCGACCCGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

466

Amino Acids

50.0

Weight (kDa)

10.0

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030 FvH4_3g21030
malus_domestica	MD03G1218200.v1.1 MD11G1236000.v1.1
pyrus_communis	pycom03g16770 pycom11g20770
rosa_chinensis	RchiOBHm_Chr5g0036061
rosa_laevigata	RLG00000033662
rosa_multiflora	Rmu_sc0000382.1_g000033 Rmu_sc0012355.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044690
rosa_rugosa	Rorug05G0152400 Rorug05G0152500 Rorug05G0152500
rosa_samantha	Rh5AG246600 Rh5BG246900 Rh5CG278000 Rh5DG255500
rosa_wichuraiana	Rw5G022630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1130
AccI	GTMKAC	2 cut(s)	551, 1001
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	29, 1134
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	1376
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	992, 1130
AgsI	TTSAA	7 cut(s)	77, 190, 462, 546, 804, 1034, 1375
AhdI	GACNNNNNGTC	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	6 cut(s)	80, 265, 432, 489, 702, 828
AluI	AGCT	6 cut(s)	80, 265, 432, 489, 702, 828
Alw21I	GWGCWC	2 cut(s)	49, 830
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	6 cut(s)	486, 899, 1016, 1151, 1184, 1265
ApoI	RAATTY	1 cut(s)	1376
AsiSI	GCGATCGC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	590, 667
AspS9I	GGNCC	2 cut(s)	248, 608
AsuC2I	CCSGG	2 cut(s)	994, 1388
AsuHPI	GGTGA	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	248, 608
AxyI	CCTNAGG	2 cut(s)	33, 1156
BanII	GRGCYC	2 cut(s)	25, 830
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	2 cut(s)	49, 830
BbvI	GCAGC	6 cut(s)	498, 911, 1028, 1138, 1171, 1252
BccI	CCATC	3 cut(s)	33, 259, 277
BceAI	ACGGC	2 cut(s)	240, 1353
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	2 cut(s)	994, 1388
BfaI	CTAG	4 cut(s)	282, 723, 786, 1305
BfmI	CTRYAG	2 cut(s)	9, 973
BisI	GCNGC	6 cut(s)	487, 900, 1017, 1152, 1185, 1266
BlsI	GCNGC	6 cut(s)	488, 901, 1018, 1153, 1186, 1267
Bme1390I	CCNGG	3 cut(s)	332, 994, 1388
Bme18I	GGWCC	2 cut(s)	248, 608
BmeRI	GACNNNNNGTC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	248, 608
BmiI	GGNNCC	4 cut(s)	22, 984, 1065, 1273
BmrFI	CCNGG	3 cut(s)	332, 994, 1388
BmrI	ACTGGG	1 cut(s)	1236
BmsI	GCATC	2 cut(s)	728, 1196
BmuI	ACTGGG	1 cut(s)	1236
BpiI	GAAGAC	1 cut(s)	754
BplI	GAGNNNNNCTC	2 cut(s)	1222, 1254
BpmI	CTGGAG	1 cut(s)	1050
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	2 cut(s)	994, 1388
Bsc4I	CCNNNNNNNGG	2 cut(s)	992, 1130
Bse1I	ACTGG	7 cut(s)	405, 691, 1067, 1124, 1231, 1288, 1341
Bse21I	CCTNAGG	2 cut(s)	33, 1156
BseBI	CCWGG	1 cut(s)	332
BseGI	GGATG	3 cut(s)	25, 643, 773
BseLI	CCNNNNNNNGG	2 cut(s)	992, 1130
BseMII	CTCAG	5 cut(s)	362, 533, 1060, 1170, 1253
BseNI	ACTGG	7 cut(s)	405, 691, 1067, 1124, 1231, 1288, 1341
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	6 cut(s)	498, 911, 1028, 1138, 1171, 1252
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	49, 830
BsiSI	CCGG	3 cut(s)	777, 993, 1388
BslFI	GGGAC	4 cut(s)	338, 391, 976, 1309
BslI	CCNNNNNNNGG	2 cut(s)	992, 1130
BsmFI	GGGAC	4 cut(s)	338, 391, 976, 1309
BsmI	GAATGC	2 cut(s)	10, 1308
BsnI	GGCC	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	25, 49, 830
Bsp143I	GATC	4 cut(s)	57, 94, 284, 732
BspACI	CCGC	2 cut(s)	29, 1134
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	5 cut(s)	363, 532, 1059, 1169, 1252
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	22, 984, 1065, 1273
BspPI	GGATC	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	116
BsrI	ACTGG	7 cut(s)	405, 691, 1067, 1124, 1231, 1288, 1341
BssMI	GATC	4 cut(s)	57, 94, 284, 732
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	775
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	4 cut(s)	506, 586, 1014, 1182
BstDEI	CTNAG	6 cut(s)	33, 371, 519, 1046, 1156, 1239
BstF5I	GGATG	3 cut(s)	25, 643, 773
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	590, 667
BstKTI	GATC	4 cut(s)	60, 97, 287, 735
BstMBI	GATC	4 cut(s)	57, 94, 284, 732
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	3 cut(s)	330, 992, 1386
BstSFI	CTRYAG	2 cut(s)	9, 973
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	6 cut(s)	498, 911, 1028, 1138, 1171, 1252
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu36I	CCTNAGG	2 cut(s)	33, 1156
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	25, 643, 773
BtsIMutI	CAGTG	1 cut(s)	1224
Cac8I	GCNNGC	4 cut(s)	506, 586, 1014, 1182
CfoI	GCGC	2 cut(s)	590, 667
Cfr13I	GGNCC	2 cut(s)	248, 608
CseI	GACGC	2 cut(s)	51, 918
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	415, 505, 599
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	6 cut(s)	33, 371, 519, 1046, 1156, 1239
DpnI	GATC	4 cut(s)	59, 96, 286, 734
DpnII	GATC	4 cut(s)	57, 94, 284, 732
DriI	GACNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	775
Eam1105I	GACNNNNNGTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	775
EciI	GGCGGA	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	828
Eco24I	GRGCYC	2 cut(s)	25, 830
Eco47I	GGWCC	2 cut(s)	248, 608
Eco53kI	GAGCTC	1 cut(s)	828
Eco81I	CCTNAGG	2 cut(s)	33, 1156
EcoICRI	GAGCTC	1 cut(s)	828
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	2 cut(s)	25, 830
FaeI	CATG	3 cut(s)	418, 508, 602
FalI	AAGNNNNNCTT	2 cut(s)	1042, 1074
FaqI	GGGAC	4 cut(s)	338, 391, 976, 1309
FatI	CATG	3 cut(s)	414, 504, 598
FauI	CCCGC	1 cut(s)	1127
FblI	GTMKAC	2 cut(s)	551, 1001
Fnu4HI	GCNGC	6 cut(s)	487, 900, 1017, 1152, 1185, 1266
FokI	GGATG	3 cut(s)	12, 630, 760
FriOI	GRGCYC	2 cut(s)	25, 830
Fsp4HI	GCNGC	6 cut(s)	487, 900, 1017, 1152, 1185, 1266
FspBI	CTAG	4 cut(s)	282, 723, 786, 1305
GlaI	GCGC	2 cut(s)	589, 666
GluI	GCNGC	6 cut(s)	487, 900, 1017, 1152, 1185, 1266
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	3 cut(s)	777, 993, 1388
HgaI	GACGC	2 cut(s)	51, 918
HhaI	GCGC	2 cut(s)	590, 667
Hin1II	CATG	3 cut(s)	418, 508, 602
Hin6I	GCGC	2 cut(s)	588, 665
HinP1I	GCGC	2 cut(s)	588, 665
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	6 cut(s)	113, 401, 542, 1042, 1231, 1237
HpaII	CCGG	3 cut(s)	777, 993, 1388
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	552, 611, 1002
Hpy188III	TCNNGA	6 cut(s)	182, 282, 288, 723, 756, 823
Hpy8I	GTNNAC	3 cut(s)	552, 611, 1002
HpyAV	CCTTC	1 cut(s)	1044
HpyCH4IV	ACGT	2 cut(s)	548, 763
HpyCH4V	TGCA	6 cut(s)	197, 437, 847, 899, 1187, 1248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpyF3I	CTNAG	6 cut(s)	33, 371, 519, 1046, 1156, 1239
HpySE526I	ACGT	2 cut(s)	548, 763
Hsp92II	CATG	3 cut(s)	418, 508, 602
HspAI	GCGC	2 cut(s)	588, 665
Kzo9I	GATC	4 cut(s)	57, 94, 284, 732
LmnI	GCTCC	5 cut(s)	20, 44, 85, 825, 1069
Lsp1109I	GCAGC	6 cut(s)	498, 911, 1028, 1138, 1171, 1252
LweI	GCATC	2 cut(s)	728, 1196
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	4 cut(s)	282, 723, 786, 1305
MaeII	ACGT	2 cut(s)	548, 763
MaeIII	GTNAC	5 cut(s)	391, 672, 706, 764, 1279
MalI	GATC	4 cut(s)	59, 96, 286, 734
MboI	GATC	4 cut(s)	57, 94, 284, 732
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	3 cut(s)	25, 49, 830
MluCI	AATT	6 cut(s)	15, 72, 492, 591, 1092, 1376
MlyI	GAGTC	3 cut(s)	1036, 1231, 1240
MmeI	TCCRAC	1 cut(s)	1214
MnlI	CCTC	6 cut(s)	208, 284, 314, 687, 752, 1165
MseI	TTAA	3 cut(s)	230, 890, 1091
MslI	CAYNNNNRTG	1 cut(s)	603
MspI	CCGG	3 cut(s)	777, 993, 1388
MspR9I	CCNGG	3 cut(s)	332, 994, 1388
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	10, 1308
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NciI	CCSGG	2 cut(s)	994, 1388
NdeII	GATC	4 cut(s)	57, 94, 284, 732
NlaIII	CATG	3 cut(s)	418, 508, 602
NlaIV	GGNNCC	4 cut(s)	22, 984, 1065, 1273
NmuCI	GTSAC	3 cut(s)	391, 672, 706
NspI	RCATGY	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	508
PctI	GAATGC	2 cut(s)	10, 1308
PfeI	GAWTC	3 cut(s)	113, 401, 542
PflMI	CCANNNNNTGG	1 cut(s)	1130
PkrI	GCNGC	6 cut(s)	488, 901, 1018, 1153, 1186, 1267
Ple19I	CGATCG	1 cut(s)	60
PleI	GAGTC	3 cut(s)	1036, 1231, 1239
PpsI	GAGTC	3 cut(s)	1036, 1231, 1239
Psp124BI	GAGCTC	1 cut(s)	830
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	4 cut(s)	22, 984, 1065, 1273
PspPI	GGNCC	2 cut(s)	248, 608
PsrI	GAACNNNNNNTAC	2 cut(s)	1264, 1296
PsuI	RGATCY	1 cut(s)	94
PvuI	CGATCG	1 cut(s)	60
RgaI	GCGATCGC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	3 cut(s)	230, 890, 1091
SatI	GCNGC	6 cut(s)	487, 900, 1017, 1152, 1185, 1266
Sau3AI	GATC	4 cut(s)	57, 94, 284, 732
Sau96I	GGNCC	2 cut(s)	248, 608
SchI	GAGTC	3 cut(s)	1036, 1231, 1240
ScrFI	CCNGG	3 cut(s)	332, 994, 1388
SduI	GDGCHC	3 cut(s)	25, 49, 830
SexAI	ACCWGGT	1 cut(s)	330
SfaAI	GCGATCGC	1 cut(s)	60
SfaNI	GCATC	2 cut(s)	728, 1196
SfcI	CTRYAG	2 cut(s)	9, 973
SfuI	TTCGAA	1 cut(s)	116
SgfI	GCGATCGC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	248, 608
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	6 cut(s)	15, 72, 492, 591, 1092, 1376
SsiI	CCGC	2 cut(s)	29, 1134
SspI	AATATT	1 cut(s)	1207
SspMI	CTAG	4 cut(s)	282, 723, 786, 1305
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	330, 992, 1386
TaiI	ACGT	2 cut(s)	551, 766
TaqI	TCGA	2 cut(s)	111, 116
TasI	AATT	6 cut(s)	15, 72, 492, 591, 1092, 1376
TfiI	GAWTC	3 cut(s)	113, 401, 542
Tru1I	TTAA	3 cut(s)	230, 890, 1091
Tru9I	TTAA	3 cut(s)	230, 890, 1091
TscAI	CASTG	1 cut(s)	1231
TseFI	GTSAC	3 cut(s)	391, 672, 706
TseI	GCWGC	6 cut(s)	486, 899, 1016, 1151, 1184, 1265
Tsp45I	GTSAC	3 cut(s)	391, 672, 706
TspDTI	ATGAA	6 cut(s)	17, 431, 585, 762, 1095, 1121
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	1231
Van91I	CCANNNNNTGG	1 cut(s)	1130
VpaK11BI	GGWCC	2 cut(s)	248, 608
XapI	RAATTY	1 cut(s)	1376
XbaI	TCTAGA	2 cut(s)	281, 722
XceI	RCATGY	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	551, 1001
XspI	CTAG	4 cut(s)	282, 723, 786, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.