Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000964

Physical Location & Seq

Genomic Coordinates Forward (+)

31353844 .. 31359666

Gene Structure 5823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1228100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGTGTGTGTTTTGGCTTTCATGCTGCTATAGGAGGATAACAATGGAAGGCTCATCTGAGTCTGCTTGGCAGAATTCTGATAGTTCTAGAGGATTGAATAGTTCCAGAGTTTCAAACCGGAATCCAAGGCTTCATCGTGCTGGAAGGTTTGGCTTGTCGGGTGAGGCATCTCAGGATTTGGACTTACGAAAGGATAGAGATAGAGTTGTGGTGGCACACAATGATGACCTTACAAACCAGGGTGGGTTATCAGGGGTTTGTGAGGATGAGGTGGCGGTTGACCGTTTTGTCGGAGCTAGTGAATGGGGCGATGTTAGCTTGAGGCAGTGGTTGGATAAACGGGATCGATCTGTTGATGTATTTGAATGCGTGCATATATTTAGGCAAATAGTGGAAATTGTTAATGCAGCACATTCCCAAGGGATTGTTGTTCATAATGTGCGACCTTCATGTTACGTTATGTCATCTTTCAACCACGTCTCCTTTATCGAGTCTGCCTCTTGTTCGGATTCTGGCACTGATTCTCCCGAGGATGGGGTAAACAGCCCAACTGAAGAAATTAAGGATTTTCCCTCTTTCTTGCGTCGTAATTTGCATCAGCAAAGACGGAACTTAGGAAGAGAAAATTTTCAGTCTATGACAACTCCAAATGCCTTGTCGGAAACGAGTTGCATGCAGTCAAGTTCAATCTATGCAGCACGCGAATCGTTGGTACAAGAGAGTGAAAATAGAATCAGAGACCGAAATGTTGAACTAGAAGATACGAGACAACCATTTCCAATGAAACAGATATTGCTTATGGAGACCAGTTGGTATAATAGTCCCGAAGAGGTTTCTGGTGGATCAAGTTCATGTGCTTCAGACATTTACCGATTAGGGGTTCTTCTTTTTGAGTTATTCTGTCCTTTCAGCTCAAGAGAAGAAAAAAGCAGGACAATGTCTAGTCTTAGACATCGAGTTCTTCCTCCTCAATTGCTGCTGAAATGGCCGAAAGTGGCTTCGTTTTGCTTATGTCTACTGCACCCGGAGCCAAATAGCCGGCTAAAAATGGGTGAGTTGCAACAAAGTGAACTTCTGAATGAACCACGAGATGATTTAGAAGAACGTGAAGCAGCAATAGAGCTTAGAGAGAAAATAGAGGAGCAGGAATTATTACTGGAATTCTTGTTGCTTATACAACAAAGGAAACAGGAAGTTGCAGATAAGTTGCAAAATACTCTTTCGTTTCTGTGTTCTGATATTGACGAAGTTATGAAGCACCAAATAACTTCTAAGAAAAAGGGCAGTTCAATCCCACAACTGGTGAAGGAAGATGATTCGACATCAAGTTTCCCATCTATGAATATTTTTGACGATGATGATTCTGCTAGTGGGTCCAGAAAAAGGTCCAGACCAGGCACCCGGATTCACAACGTAGATGAAAGCGATGATAGTTTGGAAGGTCAGAAGACAGATACTGAAAATAAAGAAGGTGTTCTCTTGAGAAGTTCTAGATTGATGAAGAACTTTAAAAAGCTCGAGGCGGCATATTTTTTAACGAGATGGAGGCCCGTAAAGCAGTCAGCCAAACCGGCTAGACATTCACCAATAAGCAGTTCTGTTGTAACTGAAAGAAGTTCGGTCAATAATTTGCAATCAAAAGAACATAGTGAGGGTAGACGAAGTGGTTGGATAGATCCATTTCTTGAGGGGTTGTGCAAGTATCTGTCTTTCTCTAAATTAAAAGTCAAGGCAGATTTGAAGCAAGGGGATCTTTTAAATGCTTCAAATCTAGTATGCTCACTTAGTTTTGATCGTGATGGAGAATTTTTTGCTACAGCCGGTGTTAATAAGAAAATTAAAGTATTTGAATGTGACACAATAATAAATGAGGATCGTGATATCCACTATCCCGTGGTTGAAATGGCTAGCAGGTCAAAGCTAAGCAGTATATCTTGGAATAGTTATATTAAAAGCCAGATTGCTTCAAGTAACTTTGAAGGTGTGGTGCAGGTATGGGATGTTACGAGAAGTCAAGTTCTTACGGAGATGAGAGAACATGAAAGGCGTGTATGGTCCATTGACTTTTCATCAGCAGACCCAACAATGTTGGCCAGCGGGAGCGATGATGGTTCTGTAAAGCTATGGAGTATCAATCAGGCAATTCTACTTTTGCACTTGGTGGATGTCAGCTTTGAAACTAAACGTACTGCATTGATCTATATGCATGATGGAGTAAGTATTGGTACAATTAAAACAAAGGCGAATGTCTGCTGTGTACAGTTTCCATTGGACTCTAGTCGTTCCCTTGCCTTTGGTTCAGCGGATCATAAAATTTACTACTATGATCTTCGTAACTCAATGGTTCCTCTGTGCACATTGACCGGACATAATAAAACCGTGAGTTATGTCAAGTTTGTAGATGGGACAAATCTCGTTTCTGCATCCACTGACAATACTTTGAAGCTTTGGGATTTGTCAATGTCCTCATCTCGGGTCATTGACACTCCAGTTCTATCATTCACCGGCCACACGAATGTGAAGAACTTTGTGGGGTTGTCAGTTTCTGATGGTTATATTGCTACAGGCTCAGAGACTAATGAGGTTTTCATCTACCACAAGGCTTTTCCAATGCCAGCATTGTCGTACAAGTTTCAGAACACAGACCCACTTTCCGGCCAGGACACAGATGACGCTGCACAGTTTATCTCTTCCGTTTGTTGGCGAGGCCAAACCTCCACTTTAATTGCTGCAAATTCGACCGGGAATATCAAAATTTTGGAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0031461 GO:0032991 GO:0042802 GO:0044424 GO:0044464 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

924

Amino Acids

103.88

Weight (kDa)

5.82

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	587 - 725	2e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	589 - 720	1.9e-15	WDR5 beta-propeller domain
WDR55	PF24796	592 - 717	2.2e-06	WDR55
WD40_CDC20-Fz	PF24807	636 - 716	5.6e-09	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	638 - 746	4.7e-11	THOC3 beta-propeller domain
WD40_Prp19	PF24814	656 - 712	1.9e-07	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	658 - 820	3.6e-12	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	660 - 829	9.7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	673 - 710	4.5e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	696 - 838	6e-10	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	718 - 817	3.7e-10	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	728 - 822	3.8e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	735 - 859	2.9e-09	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	741 - 817	6.8e-06	EIPR1 beta-propeller
WD40_WDHD1_1st	PF24817	744 - 823	9.3e-08	WDHD1 first WD40 domain
WD40_Prp19	PF24814	746 - 858	3.5e-09	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	747 - 865	2.4e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	747 - 866	9e-12	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	748 - 921	7.8e-11	THOC3 beta-propeller domain
WD40	PF00400	783 - 818	9.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT3G15354 AT3G15354 AT3G15354 AT3G15354 AT3G15354
fragaria_vesca	FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920
malus_domestica	MD03G1228100.v1.1 MD11G1247500.v1.1
prunus_persica	Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1
pyrus_communis	pycom03g17550 pycom11g22000
rosa_chinensis	RchiOBHm_Chr5g0033591
rosa_laevigata	RLG00000033491
rosa_roxburghii	Rroxscaffold_1G00046490
rosa_rugosa	Rorug05G0140300 Rorug05G0140400 Rorug05G0140500 Rorug05G0140600 Rorug05G0140700
rosa_samantha	Rh5AG232000 Rh5BG232700 Rh5CG261600 Rh5DG238300
rosa_wichuraiana	Rw5G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
Acc36I	ACCTGC	2 cut(s)	1902, 1981
AccB1I	GGYRCC	1 cut(s)	1397
AccI	GTMKAC	2 cut(s)	1015, 1657
AccII	CGCG	1 cut(s)	702
AciI	CCGC	4 cut(s)	275, 1523, 2097, 2303
AclWI	GGATC	6 cut(s)	351, 850, 1670, 1758, 1881, 2313
AcoI	YGGCCR	4 cut(s)	986, 2091, 2506, 2656
AcsI	RAATTY	7 cut(s)	73, 625, 1160, 1805, 2313, 2734, 2754
AcuI	CTGAAG	2 cut(s)	573, 843
AdeI	CACNNNGTG	1 cut(s)	2161
AfaI	GTAC	5 cut(s)	714, 2188, 2227, 2259, 2627
AfiI	CCNNNNNNNGG	8 cut(s)	533, 534, 877, 1300, 1383, 2472, 2654, 2700
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	3 cut(s)	237, 1393, 2658
AjuI	GAANNNNNNNTTGG	2 cut(s)	1579, 1611
AleI	CACNNNNGTG	1 cut(s)	2516
AluBI	AGCT	9 cut(s)	296, 318, 912, 1123, 1516, 1921, 2122, 2172, 2446
AluI	AGCT	9 cut(s)	296, 318, 912, 1123, 1516, 1921, 2122, 2172, 2446
Alw21I	GWGCWC	1 cut(s)	2357
Alw26I	GTCTC	5 cut(s)	484, 732, 760, 797, 2567
Alw44I	GTGCAC	1 cut(s)	2353
AlwI	GGATC	6 cut(s)	351, 850, 1670, 1758, 1881, 2313
AlwNI	CAGNNNCTG	2 cut(s)	1457, 2546
Ama87I	CYCGRG	3 cut(s)	527, 1517, 2472
AoxI	GGCC	6 cut(s)	986, 1547, 2091, 2506, 2656, 2707
ApaLI	GTGCAC	1 cut(s)	2353
ApeKI	GCWGC	7 cut(s)	24, 407, 695, 976, 1112, 2675, 2729
ApoI	RAATTY	7 cut(s)	73, 625, 1160, 1805, 2313, 2734, 2754
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
Asp700I	GAANNNNTTC	2 cut(s)	627, 1473
AspS9I	GGNCC	4 cut(s)	1374, 1386, 1548, 2055
AsuC2I	CCSGG	3 cut(s)	1025, 1402, 2743
AsuHPI	GGTGA	5 cut(s)	173, 1064, 1315, 1575, 2494
AsuNHI	GCTAGC	1 cut(s)	1907
AvaI	CYCGRG	3 cut(s)	527, 1517, 2472
AvaII	GGWCC	3 cut(s)	1374, 1386, 2055
BaeGI	GKGCMC	1 cut(s)	2357
BalI	TGGCCA	1 cut(s)	2093
BanI	GGYRCC	1 cut(s)	1397
BauI	CACGAG	1 cut(s)	1086
BbsI	GAAGAC	1 cut(s)	1454
Bbv12I	GWGCWC	1 cut(s)	2357
BbvI	GCAGC	7 cut(s)	11, 419, 707, 963, 1124, 2662, 2716
BccI	CCATC	9 cut(s)	527, 1342, 1536, 1793, 2102, 2204, 2396, 2543, 2758
BcgI	CGANNNNNNTGC	4 cut(s)	655, 687, 689, 721
BciT130I	CCWGG	3 cut(s)	239, 1395, 2660
BcnI	CCSGG	3 cut(s)	1025, 1402, 2743
BcoDI	GTCTC	5 cut(s)	484, 732, 760, 797, 2567
BfmI	CTRYAG	3 cut(s)	28, 1815, 2562
BfuAI	ACCTGC	2 cut(s)	1902, 1981
BglI	GCCNNNNNGGC	1 cut(s)	1571
BisI	GCNGC	8 cut(s)	25, 408, 696, 977, 1113, 1524, 2676, 2730
BlpI	GCTNAGC	1 cut(s)	1922
BlsI	GCNGC	8 cut(s)	26, 409, 697, 978, 1114, 1525, 2677, 2731
Bme1390I	CCNGG	6 cut(s)	239, 1025, 1395, 1402, 2660, 2743
Bme18I	GGWCC	3 cut(s)	1374, 1386, 2055
BmeT110I	CYCGRG	3 cut(s)	527, 1517, 2472
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	4 cut(s)	1374, 1386, 1548, 2055
BmiI	GGNNCC	4 cut(s)	1029, 1375, 1399, 2346
BmrFI	CCNGG	6 cut(s)	239, 1025, 1395, 1402, 2660, 2743
BmsI	GCATC	3 cut(s)	176, 604, 2432
BmtI	GCTAGC	1 cut(s)	1911
BoxI	GACNNNNGTC	1 cut(s)	2277
BpiI	GAAGAC	1 cut(s)	1454
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
BpmI	CTGGAG	1 cut(s)	2472
Bpu1102I	GCTNAGC	1 cut(s)	1922
BpuEI	CTTGAG	4 cut(s)	340, 898, 1501, 1706
BpuMI	CCSGG	3 cut(s)	1025, 1402, 2743
Bsa29I	ATCGAT	1 cut(s)	346
BsaI	GGTCTC	2 cut(s)	732, 797
BsaJI	CCNNGG	5 cut(s)	125, 238, 418, 528, 1893
BsaWI	WCCGGW	2 cut(s)	117, 2363
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 508, 538
Bsc4I	CCNNNNNNNGG	8 cut(s)	533, 534, 877, 1300, 1383, 2472, 2654, 2700
Bse118I	RCCGGY	4 cut(s)	1038, 1570, 1820, 2504
Bse1I	ACTGG	4 cut(s)	807, 1161, 1305, 2489
BseBI	CCWGG	3 cut(s)	239, 1395, 2660
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	5 cut(s)	125, 238, 418, 528, 1893
BseGI	GGATG	5 cut(s)	271, 538, 2005, 2170, 2423
BseLI	CCNNNNNNNGG	8 cut(s)	533, 534, 877, 1300, 1383, 2472, 2654, 2700
BseMII	CTCAG	3 cut(s)	48, 185, 2583
BseNI	ACTGG	4 cut(s)	807, 1161, 1305, 2489
BseRI	GAGGAG	2 cut(s)	957, 1154
BseSI	GKGCMC	1 cut(s)	2357
BseXI	GCAGC	7 cut(s)	11, 419, 707, 963, 1124, 2662, 2716
BsgI	GTGCAG	3 cut(s)	1004, 2009, 2661
Bsh1236I	CGCG	1 cut(s)	702
Bsh1285I	CGRYCG	1 cut(s)	2742
BshFI	GGCC	6 cut(s)	988, 1549, 2093, 2508, 2658, 2709
BshNI	GGYRCC	1 cut(s)	1397
BshVI	ATCGAT	1 cut(s)	346
BsiEI	CGRYCG	1 cut(s)	2742
BsiHKAI	GWGCWC	1 cut(s)	2357
BsiHKCI	CYCGRG	3 cut(s)	527, 1517, 2472
BslFI	GGGAC	2 cut(s)	807, 2419
BslI	CCNNNNNNNGG	8 cut(s)	533, 534, 877, 1300, 1383, 2472, 2654, 2700
BsmAI	GTCTC	5 cut(s)	484, 732, 760, 797, 2567
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	807, 2419
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	6 cut(s)	988, 1549, 2093, 2508, 2658, 2709
Bso31I	GGTCTC	2 cut(s)	732, 797
BsoBI	CYCGRG	3 cut(s)	527, 1517, 2472
Bsp1286I	GDGCHC	1 cut(s)	2357
Bsp1407I	TGTACA	1 cut(s)	2257
Bsp1720I	GCTNAGC	1 cut(s)	1922
BspACI	CCGC	4 cut(s)	275, 1523, 2097, 2303
BspANI	GGCC	6 cut(s)	988, 1549, 2093, 2508, 2658, 2709
BspCNI	CTCAG	3 cut(s)	49, 184, 2582
BspDI	ATCGAT	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	4 cut(s)	1029, 1375, 1399, 2346
BspMI	ACCTGC	2 cut(s)	1902, 1981
BspOI	GCTAGC	1 cut(s)	1911
BspPI	GGATC	6 cut(s)	351, 850, 1670, 1758, 1881, 2313
BspT107I	GGYRCC	1 cut(s)	1397
BspTNI	GGTCTC	2 cut(s)	732, 797
BsrFI	RCCGGY	4 cut(s)	1038, 1570, 1820, 2504
BsrGI	TGTACA	1 cut(s)	2257
BsrI	ACTGG	4 cut(s)	807, 1161, 1305, 2489
BssAI	RCCGGY	4 cut(s)	1038, 1570, 1820, 2504
BssECI	CCNNGG	5 cut(s)	125, 238, 418, 528, 1893
BssSI	CACGAG	1 cut(s)	1086
BssT1I	CCWWGG	2 cut(s)	125, 418
Bst2BI	CACGAG	1 cut(s)	1086
Bst2UI	CCWGG	3 cut(s)	239, 1395, 2660
Bst4CI	ACNGT	4 cut(s)	284, 2262, 2380, 2682
Bst6I	CTCTTC	3 cut(s)	613, 822, 2695
BstAUI	TGTACA	1 cut(s)	2257
BstC8I	GCNNGC	7 cut(s)	371, 674, 700, 1040, 1909, 2095, 2616
BstDEI	CTNAG	9 cut(s)	57, 171, 613, 947, 1124, 1272, 1784, 1922, 2569
BstDSI	CCRYGG	1 cut(s)	1893
BstF5I	GGATG	5 cut(s)	271, 538, 2005, 2170, 2423
BstFNI	CGCG	1 cut(s)	702
BstMAI	GTCTC	5 cut(s)	484, 732, 760, 797, 2567
BstMCI	CGRYCG	1 cut(s)	2742
BstMWI	GCNNNNNNNGC	5 cut(s)	315, 985, 1027, 1555, 1571
BstNI	CCWGG	3 cut(s)	239, 1395, 2660
BstNSI	RCATGY	1 cut(s)	676
BstPAI	GACNNNNGTC	1 cut(s)	2277
BstSCI	CCNGG	6 cut(s)	237, 1023, 1393, 1400, 2658, 2741
BstSFI	CTRYAG	3 cut(s)	28, 1815, 2562
BstSLI	GKGCMC	1 cut(s)	2357
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	7 cut(s)	11, 419, 707, 963, 1124, 2662, 2716
BstV2I	GAAGAC	1 cut(s)	1454
BstX2I	RGATCY	2 cut(s)	1675, 1750
BstYI	RGATCY	2 cut(s)	1675, 1750
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	988, 1549, 2093, 2508, 2658, 2709
BsuTUI	ATCGAT	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	1893
BtgZI	GCGATG	3 cut(s)	324, 1440, 2118
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	5 cut(s)	271, 538, 2005, 2170, 2423
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	3 cut(s)	332, 516, 2427
BveI	ACCTGC	2 cut(s)	1902, 1981
Cac8I	GCNNGC	7 cut(s)	371, 674, 700, 1040, 1909, 2095, 2616
CaiI	CAGNNNCTG	2 cut(s)	1457, 2546
Cfr10I	RCCGGY	4 cut(s)	1038, 1570, 1820, 2504
Cfr13I	GGNCC	4 cut(s)	1374, 1386, 1548, 2055
ClaI	ATCGAT	1 cut(s)	346
CseI	GACGC	2 cut(s)	572, 2681
Csp6I	GTAC	5 cut(s)	713, 2187, 2226, 2258, 2626
CspCI	CAANNNNNGTGG	2 cut(s)	2707, 2742
CviAII	CATG	6 cut(s)	21, 450, 673, 852, 2039, 2207
CviQI	GTAC	5 cut(s)	713, 2187, 2226, 2258, 2626
DdeI	CTNAG	9 cut(s)	57, 171, 613, 947, 1124, 1272, 1784, 1922, 2569
DraI	TTTAAA	2 cut(s)	1510, 1758
DraIII	CACNNNGTG	1 cut(s)	2161
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	4 cut(s)	986, 2091, 2506, 2656
Eam1104I	CTCTTC	3 cut(s)	613, 822, 2695
EarI	CTCTTC	3 cut(s)	613, 822, 2695
Eco130I	CCWWGG	2 cut(s)	125, 418
Eco31I	GGTCTC	2 cut(s)	732, 797
Eco32I	GATATC	1 cut(s)	1882
Eco47I	GGWCC	3 cut(s)	1374, 1386, 2055
Eco57I	CTGAAG	2 cut(s)	573, 843
Eco88I	CYCGRG	3 cut(s)	527, 1517, 2472
EcoRI	GAATTC	2 cut(s)	73, 1160
EcoRII	CCWGG	3 cut(s)	237, 1393, 2658
EcoRV	GATATC	1 cut(s)	1882
EcoT14I	CCWWGG	2 cut(s)	125, 418
EcoT22I	ATGCAT	1 cut(s)	2208
ErhI	CCWWGG	2 cut(s)	125, 418
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	6 cut(s)	24, 453, 676, 855, 2042, 2210
FalI	AAGNNNNNCTT	2 cut(s)	1737, 1769
FaqI	GGGAC	2 cut(s)	807, 2419
FatI	CATG	6 cut(s)	20, 449, 672, 851, 2038, 2206
FauI	CCCGC	1 cut(s)	2090
FblI	GTMKAC	2 cut(s)	1015, 1657
Fnu4HI	GCNGC	8 cut(s)	25, 408, 696, 977, 1113, 1524, 2676, 2730
FokI	GGATG	5 cut(s)	278, 545, 2012, 2177, 2410
Fsp4HI	GCNGC	8 cut(s)	25, 408, 696, 977, 1113, 1524, 2676, 2730
GluI	GCNGC	8 cut(s)	25, 408, 696, 977, 1113, 1524, 2676, 2730
GsuI	CTGGAG	1 cut(s)	2472
HaeIII	GGCC	6 cut(s)	988, 1549, 2093, 2508, 2658, 2709
HgaI	GACGC	2 cut(s)	572, 2681
Hin1II	CATG	6 cut(s)	24, 453, 676, 855, 2042, 2210
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	2444
HphI	GGTGA	5 cut(s)	173, 1064, 1315, 1575, 2494
Hpy166II	GTNNAC	7 cut(s)	280, 541, 1016, 1070, 1658, 2258, 2355
Hpy8I	GTNNAC	7 cut(s)	280, 541, 1016, 1070, 1658, 2258, 2355
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	7 cut(s)	41, 138, 456, 1300, 1433, 1463, 1973
HpyCH4III	ACNGT	4 cut(s)	284, 2262, 2380, 2682
HpyCH4IV	ACGT	5 cut(s)	456, 477, 1105, 1413, 2185
HpyF10VI	GCNNNNNNNGC	5 cut(s)	315, 985, 1027, 1555, 1571
HpyF3I	CTNAG	9 cut(s)	57, 171, 613, 947, 1124, 1272, 1784, 1922, 2569
HpySE526I	ACGT	5 cut(s)	456, 477, 1105, 1413, 2185
Hsp92II	CATG	6 cut(s)	24, 453, 676, 855, 2042, 2210
KroI	GCCGGC	1 cut(s)	1038
KroNI	GCCGGC	1 cut(s)	1040
LmnI	GCTCC	4 cut(s)	293, 1027, 1141, 2100
Lsp1109I	GCAGC	7 cut(s)	11, 419, 707, 963, 1124, 2662, 2716
LweI	GCATC	3 cut(s)	176, 604, 2432
MaeII	ACGT	5 cut(s)	456, 477, 1105, 1413, 2185
MaeIII	GTNAC	6 cut(s)	452, 1603, 1853, 1970, 2002, 2333
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	2 cut(s)	1675, 1750
MhlI	GDGCHC	1 cut(s)	2357
MlsI	TGGCCA	1 cut(s)	2093
MluNI	TGGCCA	1 cut(s)	2093
MlyI	GAGTC	3 cut(s)	68, 500, 2267
MmeI	TCCRAC	4 cut(s)	271, 312, 639, 1649
Mox20I	TGGCCA	1 cut(s)	2093
Mph1103I	ATGCAT	1 cut(s)	2208
MroNI	GCCGGC	1 cut(s)	1038
MroXI	GAANNNNTTC	2 cut(s)	627, 1473
MscI	TGGCCA	1 cut(s)	2093
MslI	CAYNNNNRTG	3 cut(s)	222, 2514, 2516
Msp20I	TGGCCA	1 cut(s)	2093
MspA1I	CMGCKG	2 cut(s)	2097, 2303
MspR9I	CCNGG	6 cut(s)	239, 1025, 1395, 1402, 2660, 2743
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	3 cut(s)	239, 1395, 2660
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	5 cut(s)	315, 985, 1027, 1555, 1571
NaeI	GCCGGC	1 cut(s)	1040
NciI	CCSGG	3 cut(s)	1025, 1402, 2743
NgoMIV	GCCGGC	1 cut(s)	1038
NheI	GCTAGC	1 cut(s)	1907
NlaIII	CATG	6 cut(s)	24, 453, 676, 855, 2042, 2210
NlaIV	GGNNCC	4 cut(s)	1029, 1375, 1399, 2346
NmuCI	GTSAC	1 cut(s)	1853
NsiI	ATGCAT	1 cut(s)	2208
NspI	RCATGY	1 cut(s)	676
OliI	CACNNNNGTG	1 cut(s)	2516
PaeI	GCATGC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	1517
PctI	GAATGC	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	1040
PdmI	GAANNNNTTC	2 cut(s)	627, 1473
PfeI	GAWTC	8 cut(s)	121, 509, 521, 704, 732, 1316, 1361, 1405
PflFI	GACNNNGTC	1 cut(s)	937
PkrI	GCNGC	8 cut(s)	26, 409, 697, 978, 1114, 1525, 2677, 2731
PleI	GAGTC	3 cut(s)	67, 499, 2267
PpsI	GAGTC	3 cut(s)	67, 499, 2267
PshAI	GACNNNNGTC	1 cut(s)	2277
Psp6I	CCWGG	3 cut(s)	237, 1393, 2658
PspGI	CCWGG	3 cut(s)	237, 1393, 2658
PspN4I	GGNNCC	4 cut(s)	1029, 1375, 1399, 2346
PspPI	GGNCC	4 cut(s)	1374, 1386, 1548, 2055
PspXI	VCTCGAGB	1 cut(s)	1517
PstNI	CAGNNNCTG	2 cut(s)	1457, 2546
PsuI	RGATCY	2 cut(s)	1675, 1750
PsyI	GACNNNGTC	1 cut(s)	937
RsaI	GTAC	5 cut(s)	714, 2188, 2227, 2259, 2627
RsaNI	GTAC	5 cut(s)	713, 2187, 2226, 2258, 2626
RseI	CAYNNNNRTG	3 cut(s)	222, 2514, 2516
SatI	GCNGC	8 cut(s)	25, 408, 696, 977, 1113, 1524, 2676, 2730
Sau96I	GGNCC	4 cut(s)	1374, 1386, 1548, 2055
SchI	GAGTC	3 cut(s)	68, 500, 2267
ScrFI	CCNGG	6 cut(s)	239, 1025, 1395, 1402, 2660, 2743
SduI	GDGCHC	1 cut(s)	2357
SfaNI	GCATC	3 cut(s)	176, 604, 2432
SfcI	CTRYAG	3 cut(s)	28, 1815, 2562
Sfr274I	CTCGAG	1 cut(s)	1517
SinI	GGWCC	3 cut(s)	1374, 1386, 2055
SlaI	CTCGAG	1 cut(s)	1517
SmiMI	CAYNNNNRTG	3 cut(s)	222, 2514, 2516
SmlI	CTYRAG	5 cut(s)	319, 913, 1480, 1517, 1685
SmoI	CTYRAG	5 cut(s)	319, 913, 1480, 1517, 1685
SphI	GCATGC	1 cut(s)	676
SsiI	CCGC	4 cut(s)	275, 1523, 2097, 2303
SspI	AATATT	1 cut(s)	1345
StyD4I	CCNGG	6 cut(s)	237, 1023, 1393, 1400, 2658, 2741
StyI	CCWWGG	2 cut(s)	125, 418
TaaI	ACNGT	4 cut(s)	284, 2262, 2380, 2682
TaiI	ACGT	5 cut(s)	459, 480, 1108, 1416, 2188
TaqI	TCGA	6 cut(s)	346, 489, 955, 1319, 1518, 2738
TaqII	GACCGA	2 cut(s)	756, 1609
TatI	WGTACW	1 cut(s)	2257
TauI	GCSGC	1 cut(s)	1526
TfiI	GAWTC	8 cut(s)	121, 509, 521, 704, 732, 1316, 1361, 1405
TscAI	CASTG	3 cut(s)	332, 523, 2434
TseFI	GTSAC	1 cut(s)	1853
TseI	GCWGC	7 cut(s)	24, 407, 695, 976, 1112, 2675, 2729
Tsp45I	GTSAC	1 cut(s)	1853
TspGWI	ACGGA	3 cut(s)	622, 2039, 2683
TspRI	CASTG	3 cut(s)	332, 523, 2434
Tth111I	GACNNNGTC	1 cut(s)	937
VneI	GTGCAC	1 cut(s)	2353
VpaK11BI	GGWCC	3 cut(s)	1374, 1386, 2055
XapI	RAATTY	7 cut(s)	73, 625, 1160, 1805, 2313, 2734, 2754
XbaI	TCTAGA	2 cut(s)	86, 1490
XceI	RCATGY	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	1517
XmiI	GTMKAC	2 cut(s)	1015, 1657
XmnI	GAANNNNTTC	2 cut(s)	627, 1473
Zsp2I	ATGCAT	1 cut(s)	2208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.