Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000964

Physical Location & Seq

Genomic Coordinates Forward (+)

65703258 .. 65709271

Gene Structure 6014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGTGTGTGTTATTGCCTTCATGCTGCTATAGGAGGATAATAATGGAAGGCTCATCTGAGTCTGCTTGGCAGAGGTCTAATAGTTCTAGAGATTTGAATACTTCCAGAGTCTCAAACCGGAATCCAAGGCTTAGTCATTCTAGAAGATTCGGCTTCTTGGGTGGTTCATCGCAGGATTCGGATTTAAGGAATGAGAGAGATGGGGTAGTGGTGGCACACACTGATGACCTAGGAAACCAGGGTGGATTGTCTGGGGTGTGTGAGGATGAGGTACCAGTTGAACCTTTTGTTCGGGCCATTGAATGGGGAGATGTTAGCTTGAGGCAATGGTTGGATAGACCGGATCGATCTGTTGATGCATTTGAATGCTTGCATGTATTTAGGCAAATAGTGGAAATTGTTAATGTAGCACATTCAGAAGGAATTGTAGTTCATAATGTGCGGCCTTCCTGCTTTGTTATGTCCTCTTTTAATCATGTCTCTTTCATCGAGTCTGCATCTTGCTCAGATTCTGGCACTGATTCTCCCGAGGATGGGTTAAATAGCCCAACCCTGGAAGCGAAGAACTTAACCTCTGCCTTGCATCAGAAACGAAGCAACATAGCAAGAGGAAATTTTCAATTTATGAAAGCTCCAGCAAATACTTTGTCAGATACAGGTTGCATGCAGTCAAGCTCAATATATGCAGCGCGTGAATCATTAATGCAAGAGAGTGAAGAACATAGAACCAGAGAAAGGAGTGCTCAACTAGAAGATAAGAGACAGCCATTTCCAATGAAACAGATATTGCTCATGGAGAACAATTGGTATACTAGTCCTGAAGAGGTTGCTGGTGGTCCAAGTCCCTGTGCTTCAGACATTTATCGATTAGGAGTTCTTCTTTTTGAGTTATTCTGCCCATTCAGCTCAAGAGAAGAAAAGAGTAGGACTATGTCTAGTCTGAGACATCGAGTTCTACCTCCGCAATTACTGCTGAGATGGCCAAAAGAAGCTTCATTTTGCTTATGGCTACTGCACCCTGAGCCAAATAGTCGGCCTAAAATGGGTGAATTGCTACAGAGCGAATTTCTTAATGAACCAAGAGATGATTTAGAAGAACGTGAAGCAGCAATGGAGCTTAGAGAGAAAATAGAGGAGCAGGAGTTATTGCTGGAATTTCTCTTGCTTGTAAAACAAAGGAAACAGGAAGCAGCCGATAAGTTGCGGAATACTGTTTCATTTCTGTGTTCCGATATTGAAGAAGTTGTGAAGCACAAAACAAGTTCCAAGGGAAAAGGTGGTTCATGCTCAGAGCTGGTAAAGGAAGATCATTCAACATCAAGTTTCCCATCTATGAATATTACTGATGATGATGATTCGGCTAGTGGGTCCAGAAAACGATTCAGACCAGGCGTCCATATTCACAATGGAGAGGAGTGTGATGATAATTTGGATGGTCAGAAGTCAGAAACTGATAATCAAGAAAGTATTCTTTTGAGAAGTTCCAGATTGATGAACAACTTTAAAAAGCTAGAGTCGGCATATTTTTTGACGAGATGGAGGCCAATCAAGCACTCAGCCAAACCCTTGACTAGACATTCATCAATAAGTAGTGATGGTAGAGGTTCTATTGTTGCAACTGAAAGAAGTTCTGTGAGTAATTTGACATTAAAAGAACAACATAGTGAAGGTAGACGAAGTGGTTGGATAGAACCATTTCTTGAGGGATTATGCAAGTATCTATCTTTCTCAAAATTAAAAGTGAAGGCGGATTTGAAGCAGGCAGATCTTCTGAATTCCTCAAATCTAGTATGCTCACTTAGTTTTGATCGGGATGGAGAATTTTTGCTACAGCTGGTATCAAAGCTAAGCAATATATGTTGGAACAGTTATATCAAAAGCCAGATTGCTTCAAGTAACTTTGAAGGTGTAGTGCAGGTGTGGGATGTTACAAGAAGTCAAGTACTAATGGAGATGAAAGAACATGAGAAGCGTGTATGGTCCATTGACTTTTCATCAGCAGACCCAACAATGCTAGCCAGCGGGAGTGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGCAATTATATTCTTGCACTTGGTGGATGGAGAAAGTATTGGTACAATAAAAACAAAGGCCAATGTTTGCTGTGTACAGTTTCCTTTGGATTCTTGTCGTTCCCTTGCATTCGGTTCAGCGGATCATAAAATTTATTACTATGATCTTCGTAACTCGAAGGTTCCTCTTTGTACATTGATTGGACACAACAAAACTGTGAGTTATGTCAAGTTCATAGATAGGATGAATCTTGTTTCTGCATCCACCGACAACACACTGAAGCTTTGGGATTTGTCAACATGCACATCTCGAGTCATAGACACTCCGGTTATGTCATTCACAGGTCACACGAATGTGAAGAACTTTGTGGGTTTGTCAGTTTCTGATGGTTACATTGCTACCGGCTCAGAGACTAATGAGGTTTTCGTCTACCACAAGGCGTTCCCAATGCCGGCGTTGTCGTACAAGTTTCAGGCCACAGACCCGCTTTCTGGCCAGGATACGGATGATGCTGCACAATTTATCTCATCTGTTTGTTGGCGTGGCCAATCCTCCACCTTAATTGCTGCAAATTCCACAGGGAATATCAAAATCCTGGAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0031461 GO:0032991 GO:0042802 GO:0044424 GO:0044464 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

883

Amino Acids

99.06

Weight (kDa)

5.92

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_WDHD1_1st	PF24817	595 - 712	1.2e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	616 - 821	9.2e-21	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	617 - 715	5.6e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	626 - 697	2.8e-10	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	626 - 697	1e-10	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	627 - 784	9.4e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	628 - 799	4.7e-16	TEP-1 second beta-propeller
WD40_Prp19	PF24814	631 - 687	3.8e-08	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	633 - 778	1.8e-10	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	635 - 782	2.9e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40	PF00400	648 - 685	1.7e-07	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_1st	PF25171	688 - 777	4.2e-09	WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st	PF24817	704 - 784	2.4e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	706 - 818	2.8e-08	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	707 - 826	3.6e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	707 - 825	1.6e-12	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	708 - 881	1.2e-10	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	721 - 817	1.3e-06	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT3G15354 AT3G15354 AT3G15354 AT3G15354 AT3G15354
fragaria_vesca	FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920
malus_domestica	MD03G1228100.v1.1 MD11G1247500.v1.1
prunus_persica	Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1
pyrus_communis	pycom03g17550 pycom11g22000
rosa_chinensis	RchiOBHm_Chr5g0033591
rosa_laevigata	RLG00000033491
rosa_roxburghii	Rroxscaffold_1G00046490
rosa_rugosa	Rorug05G0140300 Rorug05G0140400 Rorug05G0140500 Rorug05G0140600 Rorug05G0140700
rosa_samantha	Rh5AG232000 Rh5BG232700 Rh5CG261600 Rh5DG238300
rosa_wichuraiana	Rw5G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1906
Acc36I	ACCTGC	1 cut(s)	1906
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	303
AccI	GTMKAC	3 cut(s)	809, 1672, 2472
AccII	CGCG	1 cut(s)	691
AciI	CCGC	7 cut(s)	442, 962, 1204, 1748, 2022, 2183, 2528
AclWI	GGATC	2 cut(s)	351, 2193
AcoI	YGGCCR	3 cut(s)	980, 2536, 2587
AcsI	RAATTY	7 cut(s)	613, 1064, 1154, 1774, 1820, 2193, 2614
AcuI	CTGAAG	3 cut(s)	837, 840, 2342
AcyI	GRCGYC	1 cut(s)	1392
AdeI	CACNNNGTG	1 cut(s)	2086
AfaI	GTAC	6 cut(s)	273, 1944, 2107, 2139, 2236, 2507
AhdI	GACNNNNNGTC	1 cut(s)	1391
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	5 cut(s)	237, 552, 1387, 2538, 2637
AjuI	GAANNNNNNNTTGG	2 cut(s)	976, 1008
AleI	CACNNNNGTG	1 cut(s)	2396
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	5 cut(s)	115, 484, 754, 937, 2447
AlwI	GGATC	2 cut(s)	351, 2193
AlwNI	CAGNNNCTG	3 cut(s)	512, 1451, 2426
Ama87I	CYCGRG	2 cut(s)	527, 2352
AoxI	GGCC	9 cut(s)	294, 443, 980, 1034, 1541, 2121, 2517, 2536, 2587
ApeKI	GCWGC	6 cut(s)	24, 686, 1106, 1190, 2555, 2609
ApoI	RAATTY	7 cut(s)	613, 1064, 1154, 1774, 1820, 2193, 2614
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	1467, 1695
Asp718I	GGTACC	1 cut(s)	271
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	4 cut(s)	294, 836, 1368, 1980
AsuHPI	GGTGA	1 cut(s)	1058
AsuNHI	GCTAGC	1 cut(s)	2014
AvaI	CYCGRG	2 cut(s)	527, 2352
AvaII	GGWCC	3 cut(s)	836, 1368, 1980
AvrII	CCTAGG	1 cut(s)	229
BalI	TGGCCA	3 cut(s)	982, 2538, 2589
BanI	GGYRCC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	6 cut(s)	11, 698, 1118, 1202, 2542, 2596
BciT130I	CCWGG	5 cut(s)	239, 554, 1389, 2540, 2639
BciVI	GTATCC	1 cut(s)	2536
BcoDI	GTCTC	5 cut(s)	115, 484, 754, 937, 2447
BcuI	ACTAGT	1 cut(s)	812
BfmI	CTRYAG	3 cut(s)	28, 1055, 1829
BfuAI	ACCTGC	1 cut(s)	1906
BfuI	GTATCC	1 cut(s)	2536
BglII	AGATCT	1 cut(s)	1765
BisI	GCNGC	7 cut(s)	25, 443, 687, 1107, 1191, 2556, 2610
BlnI	CCTAGG	1 cut(s)	229
BlpI	GCTNAGC	1 cut(s)	1847
BlsI	GCNGC	7 cut(s)	26, 444, 688, 1108, 1192, 2557, 2611
BmcAI	AGTACT	1 cut(s)	1944
Bme1390I	CCNGG	5 cut(s)	239, 554, 1389, 2540, 2639
Bme18I	GGWCC	3 cut(s)	836, 1368, 1980
BmeRI	GACNNNNNGTC	1 cut(s)	1391
BmeT110I	CYCGRG	2 cut(s)	527, 2352
BmgT120I	GGNCC	4 cut(s)	294, 836, 1368, 1980
BmiI	GGNNCC	3 cut(s)	273, 1369, 2226
BmrFI	CCNGG	5 cut(s)	239, 554, 1389, 2540, 2639
BmsI	GCATC	5 cut(s)	346, 506, 592, 2312, 2542
BmtI	GCTAGC	1 cut(s)	2018
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu1102I	GCTNAGC	1 cut(s)	1847
BpuEI	CTTGAG	3 cut(s)	340, 892, 1721
Bsa29I	ATCGAT	2 cut(s)	346, 865
BsaHI	GRCGYC	1 cut(s)	1392
BsaJI	CCNNGG	6 cut(s)	125, 229, 238, 528, 552, 1266
BsaWI	WCCGGW	3 cut(s)	117, 340, 2368
BsaXI	ACNNNNNCTCC	4 cut(s)	508, 538, 1127, 1157
Bse118I	RCCGGY	2 cut(s)	2444, 2494
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	3 cut(s)	332, 1116, 2436
BseBI	CCWGG	5 cut(s)	239, 554, 1389, 2540, 2639
BseCI	ATCGAT	2 cut(s)	346, 865
BseDI	CCNNGG	6 cut(s)	125, 229, 238, 528, 552, 1266
BseGI	GGATG	9 cut(s)	271, 538, 1438, 1819, 1930, 2095, 2292, 2303, 2554
BseMI	GCAATG	3 cut(s)	332, 1116, 2436
BseMII	CTCAG	8 cut(s)	48, 519, 932, 965, 1011, 1302, 1569, 2463
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	2 cut(s)	1148, 1427
BseXI	GCAGC	6 cut(s)	11, 698, 1118, 1202, 2542, 2596
BsgI	GTGCAG	3 cut(s)	998, 1934, 2541
Bsh1236I	CGCG	1 cut(s)	691
BshFI	GGCC	9 cut(s)	296, 445, 982, 1036, 1543, 2123, 2519, 2538, 2589
BshNI	GGYRCC	1 cut(s)	271
BshVI	ATCGAT	2 cut(s)	346, 865
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	2 cut(s)	527, 2352
BsiSI	CCGG	5 cut(s)	118, 341, 2369, 2445, 2495
BslFI	GGGAC	1 cut(s)	828
BsmAI	GTCTC	5 cut(s)	115, 484, 754, 937, 2447
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	2 cut(s)	371, 2171
BsnI	GGCC	9 cut(s)	296, 445, 982, 1036, 1543, 2123, 2519, 2538, 2589
BsoBI	CYCGRG	2 cut(s)	527, 2352
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp1407I	TGTACA	2 cut(s)	2137, 2234
Bsp143I	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
Bsp1720I	GCTNAGC	1 cut(s)	1847
BspACI	CCGC	7 cut(s)	442, 962, 1204, 1748, 2022, 2183, 2528
BspANI	GGCC	9 cut(s)	296, 445, 982, 1036, 1543, 2123, 2519, 2538, 2589
BspCNI	CTCAG	8 cut(s)	49, 518, 933, 966, 1012, 1301, 1568, 2462
BspDI	ATCGAT	2 cut(s)	346, 865
BspFNI	CGCG	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	273, 1369, 2226
BspMI	ACCTGC	1 cut(s)	1906
BspOI	GCTAGC	1 cut(s)	2018
BspPI	GGATC	2 cut(s)	351, 2193
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	3 cut(s)	332, 1116, 2436
BsrFI	RCCGGY	2 cut(s)	2444, 2494
BsrGI	TGTACA	2 cut(s)	2137, 2234
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	2 cut(s)	2444, 2494
BssECI	CCNNGG	6 cut(s)	125, 229, 238, 528, 552, 1266
BssMI	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
BssNAI	GTATAC	1 cut(s)	810
BssNI	GRCGYC	1 cut(s)	1392
BssT1I	CCWWGG	3 cut(s)	125, 229, 1266
Bst1107I	GTATAC	1 cut(s)	810
Bst2UI	CCWGG	5 cut(s)	239, 554, 1389, 2540, 2639
Bst4CI	ACNGT	4 cut(s)	1213, 1868, 2142, 2260
Bst6I	CTCTTC	1 cut(s)	816
BstACI	GRCGYC	1 cut(s)	1392
BstAPI	GCANNNNNTGC	1 cut(s)	970
BstAUI	TGTACA	2 cut(s)	2137, 2234
BstC8I	GCNNGC	6 cut(s)	371, 665, 1761, 2016, 2020, 2496
BstF5I	GGATG	9 cut(s)	271, 538, 1438, 1819, 1930, 2095, 2292, 2303, 2554
BstFNI	CGCG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	7 cut(s)	346, 350, 1309, 1768, 1810, 2188, 2209
BstMAI	GTCTC	5 cut(s)	115, 484, 754, 937, 2447
BstMBI	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
BstMWI	GCNNNNNNNGC	5 cut(s)	903, 970, 979, 1021, 1549
BstNI	CCWGG	5 cut(s)	239, 554, 1389, 2540, 2639
BstNSI	RCATGY	3 cut(s)	377, 667, 2346
BstSCI	CCNGG	5 cut(s)	237, 552, 1387, 2538, 2637
BstSFI	CTRYAG	3 cut(s)	28, 1055, 1829
BstUI	CGCG	1 cut(s)	691
BstV1I	GCAGC	6 cut(s)	11, 698, 1118, 1202, 2542, 2596
BstX2I	RGATCY	1 cut(s)	1765
BstYI	RGATCY	1 cut(s)	1765
BstZ17I	GTATAC	1 cut(s)	810
Bsu15I	ATCGAT	2 cut(s)	346, 865
BsuI	GTATCC	1 cut(s)	2536
BsuRI	GGCC	9 cut(s)	296, 445, 982, 1036, 1543, 2123, 2519, 2538, 2589
BsuTUI	ATCGAT	2 cut(s)	346, 865
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	9 cut(s)	271, 538, 1438, 1819, 1930, 2095, 2292, 2303, 2554
BtsIMutI	CAGTG	3 cut(s)	219, 516, 2318
BveI	ACCTGC	1 cut(s)	1906
Cac8I	GCNNGC	6 cut(s)	371, 665, 1761, 2016, 2020, 2496
CaiI	CAGNNNCTG	3 cut(s)	512, 1451, 2426
CfoI	GCGC	1 cut(s)	691
Cfr10I	RCCGGY	2 cut(s)	2444, 2494
Cfr13I	GGNCC	4 cut(s)	294, 836, 1368, 1980
ClaI	ATCGAT	2 cut(s)	346, 865
CseI	GACGC	1 cut(s)	1381
Csp6I	GTAC	6 cut(s)	272, 1943, 2106, 2138, 2235, 2506
CspCI	CAANNNNNGTGG	2 cut(s)	2587, 2622
CviAII	CATG	8 cut(s)	21, 374, 476, 664, 793, 1284, 1964, 2343
CviQI	GTAC	6 cut(s)	272, 1943, 2106, 2138, 2235, 2506
DpnI	GATC	7 cut(s)	345, 349, 1308, 1767, 1809, 2187, 2208
DpnII	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
DraI	TTTAAA	1 cut(s)	1504
DraIII	CACNNNGTG	1 cut(s)	2086
DriI	GACNNNNNGTC	1 cut(s)	1391
EaeI	YGGCCR	3 cut(s)	980, 2536, 2587
Eam1104I	CTCTTC	1 cut(s)	816
Eam1105I	GACNNNNNGTC	1 cut(s)	1391
EarI	CTCTTC	1 cut(s)	816
EciI	GGCGGA	1 cut(s)	1763
Eco130I	CCWWGG	3 cut(s)	125, 229, 1266
Eco47I	GGWCC	3 cut(s)	836, 1368, 1980
Eco57I	CTGAAG	3 cut(s)	837, 840, 2342
Eco88I	CYCGRG	2 cut(s)	527, 2352
EcoRI	GAATTC	1 cut(s)	1774
EcoRII	CCWGG	5 cut(s)	237, 552, 1387, 2538, 2637
EcoT14I	CCWWGG	3 cut(s)	125, 229, 1266
EcoT22I	ATGCAT	1 cut(s)	361
ErhI	CCWWGG	3 cut(s)	125, 229, 1266
FaeI	CATG	8 cut(s)	24, 377, 479, 667, 796, 1287, 1967, 2346
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	8 cut(s)	20, 373, 475, 663, 792, 1283, 1963, 2342
FauI	CCCGC	2 cut(s)	2015, 2535
FblI	GTMKAC	3 cut(s)	809, 1672, 2472
Fnu4HI	GCNGC	7 cut(s)	25, 443, 687, 1107, 1191, 2556, 2610
FokI	GGATG	9 cut(s)	278, 545, 1445, 1826, 1937, 2102, 2290, 2299, 2561
Fsp4HI	GCNGC	7 cut(s)	25, 443, 687, 1107, 1191, 2556, 2610
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	7 cut(s)	25, 443, 687, 1107, 1191, 2556, 2610
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	9 cut(s)	296, 445, 982, 1036, 1543, 2123, 2519, 2538, 2589
HapII	CCGG	5 cut(s)	118, 341, 2369, 2445, 2495
HgaI	GACGC	1 cut(s)	1381
HhaI	GCGC	1 cut(s)	691
Hin1I	GRCGYC	1 cut(s)	1392
Hin1II	CATG	8 cut(s)	24, 377, 479, 667, 796, 1287, 1967, 2346
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	1 cut(s)	2340
HindII	GTYRAC	1 cut(s)	2340
HindIII	AAGCTT	2 cut(s)	990, 2324
HpaII	CCGG	5 cut(s)	118, 341, 2369, 2445, 2495
HphI	GGTGA	1 cut(s)	1058
Hpy166II	GTNNAC	5 cut(s)	810, 1673, 2138, 2340, 2473
Hpy8I	GTNNAC	5 cut(s)	810, 1673, 2138, 2340, 2473
HpyAV	CCTTC	8 cut(s)	27, 41, 413, 456, 1661, 1738, 1898, 2215
HpyCH4III	ACNGT	4 cut(s)	1213, 1868, 2142, 2260
HpyCH4IV	ACGT	1 cut(s)	1099
HpyF10VI	GCNNNNNNNGC	5 cut(s)	903, 970, 979, 1021, 1549
HpySE526I	ACGT	1 cut(s)	1099
Hsp92I	GRCGYC	1 cut(s)	1392
Hsp92II	CATG	8 cut(s)	24, 377, 479, 667, 796, 1287, 1967, 2346
HspAI	GCGC	1 cut(s)	689
KpnI	GGTACC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	2494
KroNI	GCCGGC	1 cut(s)	2496
Kzo9I	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
LmnI	GCTCC	3 cut(s)	637, 1114, 1135
Lsp1109I	GCAGC	6 cut(s)	11, 698, 1118, 1202, 2542, 2596
LweI	GCATC	5 cut(s)	346, 506, 592, 2312, 2542
MaeII	ACGT	1 cut(s)	1099
MaeIII	GTNAC	5 cut(s)	1895, 1927, 2213, 2387, 2432
MalI	GATC	7 cut(s)	345, 349, 1308, 1767, 1809, 2187, 2208
MboI	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
MfeI	CAATTG	1 cut(s)	802
MflI	RGATCY	1 cut(s)	1765
MhlI	GDGCHC	1 cut(s)	745
MlsI	TGGCCA	3 cut(s)	982, 2538, 2589
MluNI	TGGCCA	3 cut(s)	982, 2538, 2589
MlyI	GAGTC	5 cut(s)	68, 117, 500, 1523, 2364
MmeI	TCCRAC	3 cut(s)	312, 1664, 1841
Mox20I	TGGCCA	3 cut(s)	982, 2538, 2589
Mph1103I	ATGCAT	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	2494
MroXI	GAANNNNTTC	2 cut(s)	1467, 1695
MscI	TGGCCA	3 cut(s)	982, 2538, 2589
MslI	CAYNNNNRTG	5 cut(s)	222, 364, 1222, 2394, 2396
Msp20I	TGGCCA	3 cut(s)	982, 2538, 2589
MspA1I	CMGCKG	3 cut(s)	1834, 2022, 2183
MspI	CCGG	5 cut(s)	118, 341, 2369, 2445, 2495
MspR9I	CCNGG	5 cut(s)	239, 554, 1389, 2540, 2639
MunI	CAATTG	1 cut(s)	802
Mva1269I	GAATGC	2 cut(s)	371, 2171
MvaI	CCWGG	5 cut(s)	239, 554, 1389, 2540, 2639
MvnI	CGCG	1 cut(s)	691
MwoI	GCNNNNNNNGC	5 cut(s)	903, 970, 979, 1021, 1549
NaeI	GCCGGC	1 cut(s)	2496
NdeII	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
NgoMIV	GCCGGC	1 cut(s)	2494
NheI	GCTAGC	1 cut(s)	2014
NlaIII	CATG	8 cut(s)	24, 377, 479, 667, 796, 1287, 1967, 2346
NlaIV	GGNNCC	3 cut(s)	273, 1369, 2226
NmuCI	GTSAC	1 cut(s)	2387
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	3 cut(s)	377, 667, 2346
OliI	CACNNNNGTG	1 cut(s)	2396
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	2352
PaqCI	CACCTGC	1 cut(s)	1906
PctI	GAATGC	2 cut(s)	371, 2171
PdiI	GCCGGC	1 cut(s)	2496
PdmI	GAANNNNTTC	2 cut(s)	1467, 1695
PflFI	GACNNNGTC	1 cut(s)	931
PflMI	CCANNNNNTGG	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	2637
PkrI	GCNGC	7 cut(s)	26, 444, 688, 1108, 1192, 2557, 2611
PleI	GAGTC	5 cut(s)	67, 116, 499, 1522, 2363
PpsI	GAGTC	5 cut(s)	67, 116, 499, 1522, 2363
PshBI	ATTAAT	1 cut(s)	701
Psp6I	CCWGG	5 cut(s)	237, 552, 1387, 2538, 2637
PspGI	CCWGG	5 cut(s)	237, 552, 1387, 2538, 2637
PspN4I	GGNNCC	3 cut(s)	273, 1369, 2226
PspPI	GGNCC	4 cut(s)	294, 836, 1368, 1980
PstNI	CAGNNNCTG	3 cut(s)	512, 1451, 2426
PsuI	RGATCY	1 cut(s)	1765
PsyI	GACNNNGTC	1 cut(s)	931
PvuII	CAGCTG	1 cut(s)	1834
RsaI	GTAC	6 cut(s)	273, 1944, 2107, 2139, 2236, 2507
RsaNI	GTAC	6 cut(s)	272, 1943, 2106, 2138, 2235, 2506
RseI	CAYNNNNRTG	5 cut(s)	222, 364, 1222, 2394, 2396
SatI	GCNGC	7 cut(s)	25, 443, 687, 1107, 1191, 2556, 2610
Sau3AI	GATC	7 cut(s)	343, 347, 1306, 1765, 1807, 2185, 2206
Sau96I	GGNCC	4 cut(s)	294, 836, 1368, 1980
ScaI	AGTACT	1 cut(s)	1944
SchI	GAGTC	5 cut(s)	68, 117, 500, 1523, 2364
ScrFI	CCNGG	5 cut(s)	239, 554, 1389, 2540, 2639
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	5 cut(s)	346, 506, 592, 2312, 2542
SfcI	CTRYAG	3 cut(s)	28, 1055, 1829
Sfr274I	CTCGAG	1 cut(s)	2352
SinI	GGWCC	3 cut(s)	836, 1368, 1980
SlaI	CTCGAG	1 cut(s)	2352
SmiMI	CAYNNNNRTG	5 cut(s)	222, 364, 1222, 2394, 2396
SmlI	CTYRAG	4 cut(s)	319, 907, 1700, 2352
SmoI	CTYRAG	4 cut(s)	319, 907, 1700, 2352
SpeI	ACTAGT	1 cut(s)	812
SphI	GCATGC	1 cut(s)	667
SsiI	CCGC	7 cut(s)	442, 962, 1204, 1748, 2022, 2183, 2528
SspI	AATATT	1 cut(s)	1339
StyD4I	CCNGG	5 cut(s)	237, 552, 1387, 2538, 2637
StyI	CCWWGG	3 cut(s)	125, 229, 1266
TaaI	ACNGT	4 cut(s)	1213, 1868, 2142, 2260
TaiI	ACGT	1 cut(s)	1102
TaqI	TCGA	6 cut(s)	346, 489, 865, 949, 2219, 2353
TatI	WGTACW	3 cut(s)	1942, 2137, 2234
TauI	GCSGC	1 cut(s)	445
TscAI	CASTG	3 cut(s)	226, 523, 2325
TseFI	GTSAC	1 cut(s)	2387
TseI	GCWGC	6 cut(s)	24, 686, 1106, 1190, 2555, 2609
Tsp45I	GTSAC	1 cut(s)	2387
TspGWI	ACGGA	1 cut(s)	2561
TspRI	CASTG	3 cut(s)	226, 523, 2325
Tth111I	GACNNNGTC	1 cut(s)	931
Van91I	CCANNNNNTGG	1 cut(s)	303
VpaK11BI	GGWCC	3 cut(s)	836, 1368, 1980
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	7 cut(s)	613, 1064, 1154, 1774, 1820, 2193, 2614
XbaI	TCTAGA	2 cut(s)	86, 140
XceI	RCATGY	3 cut(s)	377, 667, 2346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1403
XhoI	CTCGAG	1 cut(s)	2352
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	3 cut(s)	809, 1672, 2472
XmnI	GAANNNNTTC	2 cut(s)	1467, 1695
ZrmI	AGTACT	1 cut(s)	1944
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.