Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000964

Physical Location & Seq

Genomic Coordinates Forward (+)

12769696 .. 12774493

Gene Structure 4798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGGCTCCGTGTTGAAGAAGCTGAAGAAGGCTCTGACTCCGAAGCTGCGCTGCGACTCCTCCTCCACCGCAACCTCTCCGCCTTGCCCCTCCGAAACGACGTCGTCTGAGTTCTCCACAACATCTTCCAGCTTCTCCCGCGAGAATTGTTGCGCCATTTGCCTGAGTAACGTGAAAAGAGGGCAAGGTCAAGCCATCTTCACTGCTGAGTGTTCCCACTCTTTCCACTTCGACTGCATTGCCAAAAACGTCGAGCATGGAAATCTTTGCTGCCCTATCTGCAGGGCCAAATGGGATAGAATTAATGTACCGTTCCAAGCTCCCAATGATAGTTTGGATCCTCAGCGAAACCACTTGGGCAGTATCCATCCTCATCCTGAGCCCTTCTCTGACGATGAGCCTTTACTTACCATCTCTTCTACTCAGTCATCTGTCTCCCAGAGTGTGACAATTAAGATTCACACAGAGTCACCTGCGATCTCTGCTTCAGAATCACGCGCAAATTTTCCTGTGCTTGTCAGCATTCGTGCACCACCTCTTGAGGACCCTAATGGCCACAGTCGTACACCCGTTGACCTTGTAACAGTTCTGGATGTAAGTGGCAGCATGGGTGAAACAAAGCTTTCCCTTGTCAAGAGTGCTGTCAAATTTCTCATCCTAAACTTGGGGCCTTCAGACCGGCTGTCTATAGTATCATTCTCAACAACTGCTACAAGGGTGTTTCCTCTACGAAGAATGTCTGATGATGGCCGTGAGAGTGCCATCCTAGCTGTTGAATCGCTTAGATCAAGTGGTGGAACTAGCATTGCTGAAGGACTCAAGAAAGGAACTCGAGTCCTTGAAGAACGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTCTTATCCGATGGCATTGATTCATACTATCCAGGTGGAAGCCAATTGAAGAACCAATTGCCTGCCTCTATTTTTTCTACCAAAACAGAACATGGAATTCCAGTCCACACATTTGGGTTTGGCAAGGACCATTGTCCAACTACTTTGCATGCTATATCTGATGCATCAGGCGGAACCTTTTCCTTCATTGAATCAGTTGAGATGATACAAGATTCCTTCGCTATATGCATTGGTGGTCTTCTCAGTGTTGTGACTCAAGAATTGCGACTGACACTCAAGTCAGCAACACGTGGGGTGATGATTGTTGCAATACCATCAGGGAGATATTTCAGTGAGATTTCTGACAAGGGCAAACAAGGTGTTGTTACTGTTGGAAATATGTACGCAGAAGAGGAGAAGCAATTTCTGGTATACCTCTTTGTTCCGAAATCCTCAACAAGTGACACCAAAACATCATTGTTGGAGGTGTTATGTATGTATAAAGATCTAGCTGCAAATGAGTTGATTCAGGCTCCAGGTGAAAGAATAGAAATACTGAGACCTAAGGTTTGTTCCCCTGCTGAAAAGGCAGTGTCTTTGGAGGTTGATCGGCAGTGCAACAGAGTTTCAGTCGCTGAAGCTATTGCAGAGGCACAACGGATGGCTGAGATGGGAAATCTGAAGAGTGCAAAGGCGACTTTGGCTCAAGAAAGATCAACTCTCTTGTCATCACCAGCTGCCCAAGCCGGGGACAGCCTCATTACTTTGCTTGAAGCTCAGCTCACTGAAGTCATTCATAGAATGGCAACAATGGATTCGTATACACTGACCGGCCGTGCTTACGCTCTCTCAGAAATGAGCTCGCACTCATTGCAAAGAGCCGCAGCTACAGGTGACTCGACAACCTGGAGTCTCACCATGAGTGAAGGTGGAAATTCTGCCACCAGTAGTGGTGTGTTTGAAACACCTCATATGAGCAGAATGCTGAGGTTATCGCACAATCTTGGGACTAATCCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0031461 GO:0032991 GO:0042802 GO:0044424 GO:0044464 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

627

Amino Acids

67.43

Weight (kDa)

6.48

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	50 - 95	2.8e-06	Ring finger domain
zf-RING_11	PF17123	51 - 80	4.8e-10	RING-like zinc finger
zf-C3HC4	PF00097	51 - 94	1.5e-06	Zinc finger, C3HC4 type (RING finger)
VWA_CoxE	PF05762	187 - 305	9.7e-09	VWA domain containing CoxE-like protein
VWA	PF00092	192 - 360	1.4e-21	von Willebrand factor type A domain
VWA_3	PF13768	192 - 355	1.2e-15	von Willebrand factor type A domain
VWA_2	PF13519	193 - 298	3.1e-17	von Willebrand factor type A domain
Vwaint	PF14624	539 - 615	2.1e-09	VWA / Hh protein intein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT3G15354 AT3G15354 AT3G15354 AT3G15354 AT3G15354
fragaria_vesca	FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920
malus_domestica	MD03G1228100.v1.1 MD11G1247500.v1.1
prunus_persica	Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1
pyrus_communis	pycom03g17550 pycom11g22000
rosa_chinensis	RchiOBHm_Chr5g0033591
rosa_laevigata	RLG00000033491
rosa_roxburghii	Rroxscaffold_1G00046490
rosa_rugosa	Rorug05G0140300 Rorug05G0140400 Rorug05G0140500 Rorug05G0140600 Rorug05G0140700
rosa_samantha	Rh5AG232000 Rh5BG232700 Rh5CG261600 Rh5DG238300
rosa_wichuraiana	Rw5G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
AasI	GACNNNNNNGTC	1 cut(s)	1156
AatII	GACGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	481
AccI	GTMKAC	2 cut(s)	1290, 1679
AccII	CGCG	2 cut(s)	141, 498
AciI	CCGC	5 cut(s)	69, 80, 139, 1050, 1740
AclWI	GGATC	2 cut(s)	332, 345
AcoI	YGGCCR	3 cut(s)	553, 748, 1690
AcsI	RAATTY	4 cut(s)	502, 647, 975, 1792
AcuI	CTGAAG	7 cut(s)	44, 471, 657, 831, 1515, 1559, 1665
AcvI	CACGTG	1 cut(s)	1169
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	3 cut(s)	309, 565, 1262
AfiI	CCNNNNNNNGG	3 cut(s)	664, 1605, 1606
AflIII	ACRYGT	1 cut(s)	1166
AgsI	TTSAA	7 cut(s)	16, 776, 842, 928, 1070, 1631, 1820
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	3 cut(s)	910, 1393, 1763
Alw21I	GWGCWC	2 cut(s)	532, 1721
Alw26I	GTCTC	3 cut(s)	439, 1411, 1775
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	332, 345
AlwNI	CAGNNNCTG	1 cut(s)	1493
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	5 cut(s)	285, 553, 668, 748, 1690
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	8 cut(s)	46, 51, 270, 603, 1370, 1595, 1742, 1877
ApoI	RAATTY	4 cut(s)	502, 647, 975, 1792
ArsI	GACNNNNNNTTYG	2 cut(s)	1410, 1442
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	2 cut(s)	1057, 1650
AspLEI	GCGC	3 cut(s)	51, 155, 500
AspS9I	GGNCC	4 cut(s)	285, 544, 668, 1006
AsuC2I	CCSGG	1 cut(s)	1606
AsuHPI	GGTGA	7 cut(s)	462, 623, 1186, 1409, 1581, 1763, 1765
AsuNHI	GCTAGC	1 cut(s)	869
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	544, 1006
AxyI	CCTNAGG	1 cut(s)	1422
BaeGI	GKGCMC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	3 cut(s)	8, 384, 1721
BbrPI	CACGTG	1 cut(s)	1169
BbsI	GAAGAC	1 cut(s)	1109
Bbv12I	GWGCWC	2 cut(s)	532, 1721
BbvCI	CCTCAGC	2 cut(s)	342, 1844
BbvI	GCAGC	7 cut(s)	33, 38, 257, 615, 1357, 1582, 1754
BccI	CCATC	9 cut(s)	203, 375, 419, 740, 770, 884, 1201, 1513, 1522
BceAI	ACGGC	2 cut(s)	735, 1677
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	3 cut(s)	912, 1395, 1765
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	1606
BcoDI	GTCTC	3 cut(s)	439, 1411, 1775
BfaI	CTAG	4 cut(s)	767, 801, 870, 1367
BfmI	CTRYAG	4 cut(s)	280, 687, 1746, 1875
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	1363
BisI	GCNGC	9 cut(s)	47, 52, 271, 604, 1371, 1596, 1740, 1743, 1878
BlpI	GCTNAGC	1 cut(s)	1635
BlsI	GCNGC	9 cut(s)	48, 53, 272, 605, 1372, 1597, 1741, 1744, 1879
Bme1390I	CCNGG	4 cut(s)	912, 1395, 1606, 1765
Bme18I	GGWCC	2 cut(s)	544, 1006
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	4 cut(s)	285, 544, 668, 1006
BmiI	GGNNCC	7 cut(s)	7, 339, 546, 669, 860, 1054, 1392
BmrFI	CCNGG	4 cut(s)	912, 1395, 1606, 1765
BmrI	ACTGGG	1 cut(s)	857
BmsI	GCATC	3 cut(s)	882, 1030, 1052
BmtI	GCTAGC	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	857
BoxI	GACNNNNGTC	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	1109
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	2 cut(s)	1377, 1786
Bpu10I	CCTNAGC	3 cut(s)	342, 378, 1844
Bpu1102I	GCTNAGC	1 cut(s)	1635
BpuEI	CTTGAG	5 cut(s)	560, 803, 1119, 1139, 1548
BpuMI	CCSGG	1 cut(s)	1606
BsaAI	YACGTR	1 cut(s)	1169
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	1411
BsaJI	CCNNGG	1 cut(s)	1605
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	664, 1605, 1606
Bse118I	RCCGGY	2 cut(s)	678, 1688
Bse1I	ACTGG	3 cut(s)	863, 980, 1803
Bse21I	CCTNAGG	1 cut(s)	1422
Bse3DI	GCAATG	3 cut(s)	237, 804, 1727
BseBI	CCWGG	3 cut(s)	912, 1395, 1765
BseDI	CCNNGG	1 cut(s)	1605
BseGI	GGATG	6 cut(s)	367, 373, 598, 654, 762, 1524
BseLI	CCNNNNNNNGG	3 cut(s)	664, 1605, 1606
BseMI	GCAATG	3 cut(s)	237, 804, 1727
BseNI	ACTGG	3 cut(s)	863, 980, 1803
BseRI	GAGGAG	3 cut(s)	49, 52, 1286
BseSI	GKGCMC	1 cut(s)	532
BseX3I	CGGCCG	1 cut(s)	1690
BseXI	GCAGC	7 cut(s)	33, 38, 257, 615, 1357, 1582, 1754
Bsh1236I	CGCG	2 cut(s)	141, 498
Bsh1285I	CGRYCG	1 cut(s)	1693
BshFI	GGCC	5 cut(s)	287, 555, 670, 750, 1692
BsiEI	CGRYCG	1 cut(s)	1693
BsiHKAI	GWGCWC	2 cut(s)	532, 1721
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	3 cut(s)	679, 1605, 1689
BslFI	GGGAC	2 cut(s)	1622, 1879
BslI	CCNNNNNNNGG	3 cut(s)	664, 1605, 1606
BsmAI	GTCTC	3 cut(s)	439, 1411, 1775
BsmFI	GGGAC	2 cut(s)	1622, 1879
BsmI	GAATGC	2 cut(s)	522, 1845
BsnI	GGCC	5 cut(s)	287, 555, 670, 750, 1692
Bso31I	GGTCTC	1 cut(s)	1411
BsoBI	CYCGRG	1 cut(s)	831
Bsp1286I	GDGCHC	4 cut(s)	8, 384, 532, 1721
Bsp143I	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
Bsp1720I	GCTNAGC	1 cut(s)	1635
BspACI	CCGC	5 cut(s)	69, 80, 139, 1050, 1740
BspANI	GGCC	5 cut(s)	287, 555, 670, 750, 1692
BspFNI	CGCG	2 cut(s)	141, 498
BspLI	GGNNCC	7 cut(s)	7, 339, 546, 669, 860, 1054, 1392
BspMAI	CTGCAG	2 cut(s)	284, 1879
BspMI	ACCTGC	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	2 cut(s)	332, 345
BspTNI	GGTCTC	1 cut(s)	1411
BsrDI	GCAATG	3 cut(s)	237, 804, 1727
BsrFI	RCCGGY	2 cut(s)	678, 1688
BsrI	ACTGG	3 cut(s)	863, 980, 1803
BssAI	RCCGGY	2 cut(s)	678, 1688
BssECI	CCNNGG	1 cut(s)	1605
BssMI	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
BssNAI	GTATAC	2 cut(s)	1291, 1680
BssNI	GRCGYC	1 cut(s)	101
Bst1107I	GTATAC	2 cut(s)	1291, 1680
Bst2UI	CCWGG	3 cut(s)	912, 1395, 1765
Bst4CI	ACNGT	4 cut(s)	312, 560, 586, 1249
Bst6I	CTCTTC	3 cut(s)	421, 1263, 1535
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	1729
BstBAI	YACGTR	1 cut(s)	1169
BstC8I	GCNNGC	4 cut(s)	871, 942, 1029, 1721
BstF5I	GGATG	6 cut(s)	367, 373, 598, 654, 762, 1524
BstFNI	CGCG	2 cut(s)	141, 498
BstHHI	GCGC	3 cut(s)	51, 155, 500
BstKTI	GATC	6 cut(s)	340, 480, 788, 1366, 1468, 1574
BstMAI	GTCTC	3 cut(s)	439, 1411, 1775
BstMBI	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
BstMCI	CGRYCG	1 cut(s)	1693
BstMWI	GCNNNNNNNGC	9 cut(s)	138, 159, 279, 482, 767, 1445, 1559, 1601, 1729
BstNI	CCWGG	3 cut(s)	912, 1395, 1765
BstNSI	RCATGY	1 cut(s)	1031
BstPAI	GACNNNNGTC	1 cut(s)	1011
BstSCI	CCNGG	4 cut(s)	910, 1393, 1604, 1763
BstSFI	CTRYAG	4 cut(s)	280, 687, 1746, 1875
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	2 cut(s)	141, 498
BstV1I	GCAGC	7 cut(s)	33, 38, 257, 615, 1357, 1582, 1754
BstV2I	GAAGAC	1 cut(s)	1109
BstX2I	RGATCY	2 cut(s)	337, 1363
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	2 cut(s)	337, 1363
BstZ17I	GTATAC	2 cut(s)	1291, 1680
BstZI	CGGCCG	1 cut(s)	1690
Bsu36I	CCTNAGG	1 cut(s)	1422
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	5 cut(s)	287, 555, 670, 750, 1692
BtsCI	GGATG	6 cut(s)	367, 373, 598, 654, 762, 1524
BtsI	GCAGTG	3 cut(s)	201, 1455, 1478
BtsIMutI	CAGTG	7 cut(s)	201, 1129, 1216, 1455, 1478, 1641, 1682
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	4 cut(s)	871, 942, 1029, 1721
CaiI	CAGNNNCTG	1 cut(s)	1493
CfoI	GCGC	3 cut(s)	51, 155, 500
Cfr10I	RCCGGY	2 cut(s)	678, 1688
Cfr13I	GGNCC	4 cut(s)	285, 544, 668, 1006
Csp6I	GTAC	3 cut(s)	308, 564, 1261
CviAII	CATG	7 cut(s)	257, 607, 877, 971, 1028, 1777, 1881
CviQI	GTAC	3 cut(s)	308, 564, 1261
DpnI	GATC	6 cut(s)	339, 479, 787, 1365, 1467, 1573
DpnII	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
DrdI	GACNNNNNNGTC	1 cut(s)	1156
DriI	GACNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	1156
EaeI	YGGCCR	3 cut(s)	553, 748, 1690
EagI	CGGCCG	1 cut(s)	1690
Eam1104I	CTCTTC	3 cut(s)	421, 1263, 1535
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	3 cut(s)	421, 1263, 1535
EciI	GGCGGA	2 cut(s)	69, 1065
Ecl136II	GAGCTC	1 cut(s)	1719
EclXI	CGGCCG	1 cut(s)	1690
Eco24I	GRGCYC	3 cut(s)	8, 384, 1721
Eco31I	GGTCTC	1 cut(s)	1411
Eco47I	GGWCC	2 cut(s)	544, 1006
Eco52I	CGGCCG	1 cut(s)	1690
Eco53kI	GAGCTC	1 cut(s)	1719
Eco57I	CTGAAG	7 cut(s)	44, 471, 657, 831, 1515, 1559, 1665
Eco72I	CACGTG	1 cut(s)	1169
Eco81I	CCTNAGG	1 cut(s)	1422
Eco88I	CYCGRG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	1719
EcoO109I	RGGNCCY	2 cut(s)	544, 668
EcoRI	GAATTC	1 cut(s)	975
EcoRII	CCWGG	3 cut(s)	910, 1393, 1763
EcoT22I	ATGCAT	2 cut(s)	1045, 1109
EcoT38I	GRGCYC	3 cut(s)	8, 384, 1721
FaeI	CATG	7 cut(s)	260, 610, 880, 974, 1031, 1780, 1884
FaqI	GGGAC	2 cut(s)	1622, 1879
FatI	CATG	7 cut(s)	256, 606, 876, 970, 1027, 1776, 1880
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	1830
FblI	GTMKAC	2 cut(s)	1290, 1679
Fnu4HI	GCNGC	9 cut(s)	47, 52, 271, 604, 1371, 1596, 1740, 1743, 1878
FokI	GGATG	6 cut(s)	354, 360, 605, 641, 749, 1531
FriOI	GRGCYC	3 cut(s)	8, 384, 1721
Fsp4HI	GCNGC	9 cut(s)	47, 52, 271, 604, 1371, 1596, 1740, 1743, 1878
FspBI	CTAG	4 cut(s)	767, 801, 870, 1367
GlaI	GCGC	3 cut(s)	50, 154, 499
GluI	GCNGC	9 cut(s)	47, 52, 271, 604, 1371, 1596, 1740, 1743, 1878
GsuI	CTGGAG	2 cut(s)	1377, 1786
HaeIII	GGCC	5 cut(s)	287, 555, 670, 750, 1692
HapII	CCGG	3 cut(s)	679, 1605, 1689
HhaI	GCGC	3 cut(s)	51, 155, 500
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	260, 610, 880, 974, 1031, 1780, 1884
Hin6I	GCGC	3 cut(s)	49, 153, 498
HinP1I	GCGC	3 cut(s)	49, 153, 498
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	620
HpaII	CCGG	3 cut(s)	679, 1605, 1689
HphI	GGTGA	7 cut(s)	462, 623, 1186, 1409, 1581, 1763, 1765
Hpy166II	GTNNAC	6 cut(s)	530, 566, 574, 985, 1291, 1680
Hpy188III	TCNNGA	7 cut(s)	377, 539, 590, 634, 820, 1136, 1565
Hpy8I	GTNNAC	6 cut(s)	530, 566, 574, 985, 1291, 1680
Hpy99I	CGWCG	3 cut(s)	103, 106, 254
HpyAV	CCTTC	8 cut(s)	22, 394, 681, 806, 843, 1072, 1105, 1778
HpyCH4III	ACNGT	4 cut(s)	312, 560, 586, 1249
HpyCH4IV	ACGT	4 cut(s)	101, 171, 249, 1168
HpyF10VI	GCNNNNNNNGC	9 cut(s)	138, 159, 279, 482, 767, 1445, 1559, 1601, 1729
HpySE526I	ACGT	4 cut(s)	101, 171, 249, 1168
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	7 cut(s)	260, 610, 880, 974, 1031, 1780, 1884
HspAI	GCGC	3 cut(s)	49, 153, 498
Kzo9I	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
LmnI	GCTCC	3 cut(s)	11, 325, 1396
Lsp1109I	GCAGC	7 cut(s)	33, 38, 257, 615, 1357, 1582, 1754
LweI	GCATC	3 cut(s)	882, 1030, 1052
MaeI	CTAG	4 cut(s)	767, 801, 870, 1367
MaeII	ACGT	4 cut(s)	101, 171, 249, 1168
MaeIII	GTNAC	8 cut(s)	167, 445, 468, 580, 1129, 1243, 1319, 1751
MalI	GATC	6 cut(s)	339, 479, 787, 1365, 1467, 1573
MboI	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
MfeI	CAATTG	2 cut(s)	923, 935
MflI	RGATCY	2 cut(s)	337, 1363
MhlI	GDGCHC	4 cut(s)	8, 384, 532, 1721
MlsI	TGGCCA	1 cut(s)	555
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	8 cut(s)	31, 50, 476, 810, 843, 1126, 1748, 1777
MmeI	TCCRAC	3 cut(s)	1040, 1231, 1320
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	2 cut(s)	1045, 1109
MroXI	GAANNNNTTC	2 cut(s)	1057, 1650
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	2 cut(s)	303, 453
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	1595
MspI	CCGG	3 cut(s)	679, 1605, 1689
MspR9I	CCNGG	4 cut(s)	912, 1395, 1606, 1765
MunI	CAATTG	2 cut(s)	923, 935
Mva1269I	GAATGC	2 cut(s)	522, 1845
MvaI	CCWGG	3 cut(s)	912, 1395, 1765
MvnI	CGCG	2 cut(s)	141, 498
MwoI	GCNNNNNNNGC	9 cut(s)	138, 159, 279, 482, 767, 1445, 1559, 1601, 1729
NciI	CCSGG	1 cut(s)	1606
NdeI	CATATG	1 cut(s)	1830
NdeII	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	7 cut(s)	260, 610, 880, 974, 1031, 1780, 1884
NlaIV	GGNNCC	7 cut(s)	7, 339, 546, 669, 860, 1054, 1392
NmuCI	GTSAC	5 cut(s)	445, 468, 1129, 1319, 1751
NsiI	ATGCAT	2 cut(s)	1045, 1109
NspI	RCATGY	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1031
PaeR7I	CTCGAG	1 cut(s)	831
PaqCI	CACCTGC	1 cut(s)	481
PctI	GAATGC	2 cut(s)	522, 1845
PdmI	GAANNNNTTC	2 cut(s)	1057, 1650
PfeI	GAWTC	8 cut(s)	457, 491, 776, 899, 1070, 1091, 1384, 1673
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	9 cut(s)	48, 53, 272, 605, 1372, 1597, 1741, 1744, 1879
PleI	GAGTC	8 cut(s)	31, 50, 475, 810, 842, 1126, 1748, 1776
PmaCI	CACGTG	1 cut(s)	1169
PmlI	CACGTG	1 cut(s)	1169
PpsI	GAGTC	8 cut(s)	31, 50, 475, 810, 842, 1126, 1748, 1776
Ppu21I	YACGTR	1 cut(s)	1169
PpuMI	RGGWCCY	1 cut(s)	544
PshAI	GACNNNNGTC	1 cut(s)	1011
PshBI	ATTAAT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1721
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	3 cut(s)	910, 1393, 1763
PspCI	CACGTG	1 cut(s)	1169
PspGI	CCWGG	3 cut(s)	910, 1393, 1763
PspN4I	GGNNCC	7 cut(s)	7, 339, 546, 669, 860, 1054, 1392
PspPI	GGNCC	4 cut(s)	285, 544, 668, 1006
PspPPI	RGGWCCY	1 cut(s)	544
PspXI	VCTCGAGB	1 cut(s)	831
PstI	CTGCAG	2 cut(s)	284, 1879
PstNI	CAGNNNCTG	1 cut(s)	1493
PsuI	RGATCY	2 cut(s)	337, 1363
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	1595
RsaI	GTAC	3 cut(s)	309, 565, 1262
RsaNI	GTAC	3 cut(s)	308, 564, 1261
SacI	GAGCTC	1 cut(s)	1721
SaqAI	TTAA	2 cut(s)	303, 453
SatI	GCNGC	9 cut(s)	47, 52, 271, 604, 1371, 1596, 1740, 1743, 1878
Sau3AI	GATC	6 cut(s)	337, 477, 785, 1363, 1465, 1571
Sau96I	GGNCC	4 cut(s)	285, 544, 668, 1006
SchI	GAGTC	8 cut(s)	31, 50, 476, 810, 843, 1126, 1748, 1777
ScrFI	CCNGG	4 cut(s)	912, 1395, 1606, 1765
SduI	GDGCHC	4 cut(s)	8, 384, 532, 1721
SfaNI	GCATC	3 cut(s)	882, 1030, 1052
SfcI	CTRYAG	4 cut(s)	280, 687, 1746, 1875
Sfr274I	CTCGAG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	544, 1006
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	6 cut(s)	539, 818, 831, 1134, 1154, 1563
SmoI	CTYRAG	6 cut(s)	539, 818, 831, 1134, 1154, 1563
SphI	GCATGC	1 cut(s)	1031
SsiI	CCGC	5 cut(s)	69, 80, 139, 1050, 1740
SspMI	CTAG	4 cut(s)	767, 801, 870, 1367
SstI	GAGCTC	1 cut(s)	1721
StyD4I	CCNGG	4 cut(s)	910, 1393, 1604, 1763
TaaI	ACNGT	4 cut(s)	312, 560, 586, 1249
TaiI	ACGT	4 cut(s)	104, 174, 252, 1171
TaqI	TCGA	4 cut(s)	231, 252, 832, 1757
TauI	GCSGC	1 cut(s)	1742
TfiI	GAWTC	8 cut(s)	457, 491, 776, 899, 1070, 1091, 1384, 1673
Tru1I	TTAA	2 cut(s)	303, 453
Tru9I	TTAA	2 cut(s)	303, 453
TscAI	CASTG	7 cut(s)	208, 1129, 1216, 1455, 1478, 1648, 1689
TseFI	GTSAC	5 cut(s)	445, 468, 1129, 1319, 1751
TseI	GCWGC	8 cut(s)	46, 51, 270, 603, 1370, 1595, 1742, 1877
Tsp45I	GTSAC	5 cut(s)	445, 468, 1129, 1319, 1751
TspDTI	ATGAA	3 cut(s)	891, 1054, 1643
TspGWI	ACGGA	1 cut(s)	1531
TspRI	CASTG	7 cut(s)	208, 1129, 1216, 1455, 1478, 1648, 1689
Tth111I	GACNNNGTC	1 cut(s)	103
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	544, 1006
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	4 cut(s)	502, 647, 975, 1792
XceI	RCATGY	1 cut(s)	1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	831
XmiI	GTMKAC	2 cut(s)	1290, 1679
XmnI	GAANNNNTTC	2 cut(s)	1057, 1650
XspI	CTAG	4 cut(s)	767, 801, 870, 1367
ZraI	GACGTC	1 cut(s)	102
Zsp2I	ATGCAT	2 cut(s)	1045, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.