Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000964

Physical Location & Seq

Genomic Coordinates Reverse (-)

12766596 .. 12767860

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGTCTTATACCGGAGAATGGTCATTTCGCAGCTGATCTCATTTGTAGTGGTGACCATAGCTGCAGTAGCAATAGCCGACCAAGCCCTCCCGCCTCCTCAAGCCCTTCCTGGATGCCTTGACCACTGTGGCAATCTCACAGTCCCCTATCCATTCGGCATAGGCGACGGTTGTTACCTTATACAAAAATTCAACCTCACCTGTAACGAATCCAGCCAACCTCCAACACTACACCGGACGGATGGTAGTATCATTAATACTAACATATCCGTGGCCGAAGGTGAGTTGCAAATTTTGGCTTACATAGCCTATGATTGTTACGACCAACAGGGTCATCAAACGAAAAGCATGTACAATTCCCCATGGCTCCGGGTCACCCCTCCGTTCACCATCTCTGGTACCAGAAACAAGTTCATTGCCGTTGGCTATGACACCTATGCCATTTTTTTAGGGTACCGCCCTTACCCTAATGATGATGCTAGGTACGTAGCCGGGTGCATGTCCGTAAGTGACATTCCTGACACTACTACTGCTGCTGCTAACGAGTCATGCACCGGCATTGGGTGTTGCCAAACTTCAATCCCTGACGGACTCAAAAATCGAACTGTCAAGTTGAGTAGTTACTCTAACCATACCTATGTATGGAACTTCAACCCGTGCAGCTACGCTTTCATTGTGGAAGAAGGCAAGTTCACATTTAACCCGAATACAAGTTTTCAAGAACTGAAAAACACGGAACTGCTTCCTCTGATTCTTAATTGGGAAATCGCGGACGGGTCATGTGCTGAAGCTCAAAAGAGGCAGGATTATGCTTGCAAGGCGCATAGCAAGTGTGTCAACCGGACCATCGACATCAAGACTGAACCGTCTGGTTATTATTGCCAGTGCTTGCCAGGCTACCAAGGGAACCCATATCTCCCAGATGGCTGTCAAGATATTAATGAATGCATCGCTTCAACGAACCTCTGCAACCATGGAACGTGCAAAAATTCAGATGGAGATTACACATGTACATGTAAGAAAGGTTTCAGAAACGAAAACCCAAAGAGTTGCATACAGAACACTCCTATATCAAAGAACAAGTCCCTGAAAGTTTCCTTGGGTATGTTTTTCCTCTACAATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0031461 GO:0032991 GO:0042802 GO:0044424 GO:0044464 GO:0050896 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

375

Amino Acids

41.48

Weight (kDa)

6.08

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	39 - 98	1.5e-10	Wall-associated receptor kinase galacturonan-binding
cEGF	PF12662	291 - 315	9.1e-06	Complement Clr-like EGF-like
EGF_CA	PF07645	312 - 351	1.5e-07	Calcium-binding EGF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT1G53090 AT3G15354 AT3G15354 AT3G15354 AT3G15354 AT3G15354
fragaria_vesca	FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920 FvH4_3g19920
malus_domestica	MD03G1228100.v1.1 MD11G1247500.v1.1
prunus_persica	Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1 Prupe.4G180900_v2.0.a1
pyrus_communis	pycom03g17550 pycom11g22000
rosa_chinensis	RchiOBHm_Chr5g0033591
rosa_laevigata	RLG00000033491
rosa_roxburghii	Rroxscaffold_1G00046490
rosa_rugosa	Rorug05G0140300 Rorug05G0140400 Rorug05G0140500 Rorug05G0140600 Rorug05G0140700
rosa_samantha	Rh5AG232000 Rh5BG232700 Rh5CG261600 Rh5DG238300
rosa_wichuraiana	Rw5G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	865
Acc65I	GGTACC	2 cut(s)	398, 453
AccB1I	GGYRCC	2 cut(s)	398, 453
AccII	CGCG	1 cut(s)	770
AciI	CCGC	3 cut(s)	92, 457, 770
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	3 cut(s)	188, 291, 988
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	5 cut(s)	353, 400, 455, 485, 1012
AfiI	CCNNNNNNNGG	3 cut(s)	19, 561, 642
AflIII	ACRYGT	2 cut(s)	1007, 1013
AgsI	TTSAA	5 cut(s)	193, 579, 652, 719, 957
AjnI	CCWGG	2 cut(s)	109, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AluBI	AGCT	4 cut(s)	34, 62, 663, 791
AluI	AGCT	4 cut(s)	34, 62, 663, 791
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	5 cut(s)	31, 62, 533, 536, 660
ApoI	RAATTY	3 cut(s)	188, 291, 988
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
AseI	ATTAAT	2 cut(s)	255, 939
Asp700I	GAANNNNTTC	2 cut(s)	741, 1025
Asp718I	GGTACC	2 cut(s)	398, 453
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	843
AsuC2I	CCSGG	2 cut(s)	371, 493
AsuHPI	GGTGA	5 cut(s)	64, 190, 293, 367, 379
AvaII	GGWCC	1 cut(s)	843
BanI	GGYRCC	2 cut(s)	398, 453
BbvI	GCAGC	5 cut(s)	43, 49, 520, 523, 672
BccI	CCATC	5 cut(s)	236, 398, 854, 917, 989
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	111, 894
BcnI	CCSGG	2 cut(s)	371, 493
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	5 cut(s)	32, 63, 534, 537, 661
BlsI	GCNGC	5 cut(s)	33, 64, 535, 538, 662
Bme1390I	CCNGG	4 cut(s)	111, 371, 493, 894
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	1 cut(s)	843
BmiI	GGNNCC	4 cut(s)	368, 400, 455, 908
BmrFI	CCNGG	4 cut(s)	111, 371, 493, 894
BmsI	GCATC	3 cut(s)	104, 466, 957
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	371, 493
BsaAI	YACGTR	1 cut(s)	487
BsaJI	CCNNGG	5 cut(s)	270, 362, 901, 973, 1098
BsaWI	WCCGGW	3 cut(s)	12, 234, 840
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 561, 642
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	883
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	111, 894
BseDI	CCNNGG	5 cut(s)	270, 362, 901, 973, 1098
BseGI	GGATG	2 cut(s)	119, 247
BseLI	CCNNNNNNNGG	3 cut(s)	19, 561, 642
BseMI	GCAATG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	5 cut(s)	43, 49, 520, 523, 672
BsgI	GTGCAG	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	770
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	398, 453
BsiSI	CCGG	6 cut(s)	13, 235, 370, 492, 555, 841
BslFI	GGGAC	2 cut(s)	128, 1069
BslI	CCNNNNNNNGG	3 cut(s)	19, 561, 642
BsmFI	GGGAC	2 cut(s)	128, 1069
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	275
Bsp1407I	TGTACA	2 cut(s)	351, 1010
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	2 cut(s)	362, 973
BspACI	CCGC	3 cut(s)	92, 457, 770
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	770
BspLI	GGNNCC	4 cut(s)	368, 400, 455, 908
BspMAI	CTGCAG	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	398, 453
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	554
BsrGI	TGTACA	2 cut(s)	351, 1010
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	5 cut(s)	270, 362, 901, 973, 1098
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	4 cut(s)	362, 901, 973, 1098
Bst2UI	CCWGG	2 cut(s)	111, 894
Bst4CI	ACNGT	5 cut(s)	128, 142, 170, 607, 867
BstAUI	TGTACA	2 cut(s)	351, 1010
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	814, 890
BstDSI	CCRYGG	3 cut(s)	270, 362, 973
BstEII	GGTNACC	2 cut(s)	52, 373
BstF5I	GGATG	2 cut(s)	119, 247
BstFNI	CGCG	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 83, 305, 818, 894
BstNI	CCWGG	2 cut(s)	111, 894
BstNSI	RCATGY	4 cut(s)	352, 502, 1011, 1017
BstPI	GGTNACC	2 cut(s)	52, 373
BstSCI	CCNGG	4 cut(s)	109, 369, 491, 892
BstSFI	CTRYAG	1 cut(s)	63
BstSNI	TACGTA	1 cut(s)	487
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	5 cut(s)	43, 49, 520, 523, 672
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	3 cut(s)	270, 362, 973
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	2 cut(s)	119, 247
BtsIMutI	CAGTG	2 cut(s)	124, 890
Cac8I	GCNNGC	2 cut(s)	814, 890
CfoI	GCGC	1 cut(s)	823
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	843
Csp6I	GTAC	5 cut(s)	352, 399, 454, 484, 1011
CviAII	CATG	8 cut(s)	349, 363, 499, 549, 780, 974, 1008, 1014
CviQI	GTAC	5 cut(s)	352, 399, 454, 484, 1011
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	865
DseDI	GACNNNNNNGTC	1 cut(s)	865
EaeI	YGGCCR	1 cut(s)	273
Eco105I	TACGTA	1 cut(s)	487
Eco130I	CCWWGG	4 cut(s)	362, 901, 973, 1098
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	807
Eco91I	GGTNACC	2 cut(s)	52, 373
EcoO65I	GGTNACC	2 cut(s)	52, 373
EcoRII	CCWGG	2 cut(s)	109, 892
EcoT14I	CCWWGG	4 cut(s)	362, 901, 973, 1098
EcoT22I	ATGCAT	1 cut(s)	950
ErhI	CCWWGG	4 cut(s)	362, 901, 973, 1098
FaeI	CATG	8 cut(s)	352, 366, 502, 552, 783, 977, 1011, 1017
FaqI	GGGAC	2 cut(s)	128, 1069
FatI	CATG	8 cut(s)	348, 362, 498, 548, 779, 973, 1007, 1013
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	5 cut(s)	32, 63, 534, 537, 661
FokI	GGATG	2 cut(s)	126, 254
Fsp4HI	GCNGC	5 cut(s)	32, 63, 534, 537, 661
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	822
GluI	GCNGC	5 cut(s)	32, 63, 534, 537, 661
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	6 cut(s)	13, 235, 370, 492, 555, 841
HhaI	GCGC	1 cut(s)	823
Hin1II	CATG	8 cut(s)	352, 366, 502, 552, 783, 977, 1011, 1017
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	4 cut(s)	209, 545, 591, 751
HpaII	CCGG	6 cut(s)	13, 235, 370, 492, 555, 841
HphI	GGTGA	5 cut(s)	64, 190, 293, 367, 379
Hpy166II	GTNNAC	3 cut(s)	387, 693, 838
Hpy188I	TCNGA	3 cut(s)	750, 994, 1031
Hpy188III	TCNNGA	4 cut(s)	518, 719, 856, 932
Hpy8I	GTNNAC	3 cut(s)	387, 693, 838
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	116, 272, 677
HpyCH4III	ACNGT	5 cut(s)	128, 142, 170, 607, 867
HpyCH4IV	ACGT	2 cut(s)	486, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 83, 305, 818, 894
HpySE526I	ACGT	2 cut(s)	486, 980
Hsp92II	CATG	8 cut(s)	352, 366, 502, 552, 783, 977, 1011, 1017
HspAI	GCGC	1 cut(s)	821
KpnI	GGTACC	2 cut(s)	402, 457
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	5 cut(s)	43, 49, 520, 523, 672
LweI	GCATC	3 cut(s)	104, 466, 957
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	486, 980
MaeIII	GTNAC	7 cut(s)	52, 173, 203, 317, 373, 509, 620
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	692
MfeI	CAATTG	1 cut(s)	1120
MluCI	AATT	6 cut(s)	188, 291, 355, 757, 988, 1120
MlyI	GAGTC	2 cut(s)	554, 585
MmeI	TCCRAC	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	950
MroXI	GAANNNNTTC	2 cut(s)	741, 1025
MseI	TTAA	4 cut(s)	255, 699, 756, 939
MslI	CAYNNNNRTG	3 cut(s)	269, 636, 1012
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	6 cut(s)	13, 235, 370, 492, 555, 841
MspR9I	CCNGG	4 cut(s)	111, 371, 493, 894
MunI	CAATTG	1 cut(s)	1120
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	2 cut(s)	111, 894
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	5 cut(s)	68, 83, 305, 818, 894
NciI	CCSGG	2 cut(s)	371, 493
NcoI	CCATGG	2 cut(s)	362, 973
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	8 cut(s)	352, 366, 502, 552, 783, 977, 1011, 1017
NlaIV	GGNNCC	4 cut(s)	368, 400, 455, 908
NmuCI	GTSAC	3 cut(s)	52, 373, 509
NsiI	ATGCAT	1 cut(s)	950
NspI	RCATGY	4 cut(s)	352, 502, 1011, 1017
PciI	ACATGT	2 cut(s)	1007, 1013
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	950
PdmI	GAANNNNTTC	2 cut(s)	741, 1025
PfeI	GAWTC	2 cut(s)	209, 751
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	33, 64, 535, 538, 662
PleI	GAGTC	2 cut(s)	553, 585
PpsI	GAGTC	2 cut(s)	553, 585
Ppu21I	YACGTR	1 cut(s)	487
PscI	ACATGT	2 cut(s)	1007, 1013
PshBI	ATTAAT	2 cut(s)	255, 939
Psp6I	CCWGG	2 cut(s)	109, 892
PspEI	GGTNACC	2 cut(s)	52, 373
PspGI	CCWGG	2 cut(s)	109, 892
PspN4I	GGNNCC	4 cut(s)	368, 400, 455, 908
PspPI	GGNCC	1 cut(s)	843
PstI	CTGCAG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	5 cut(s)	353, 400, 455, 485, 1012
RsaNI	GTAC	5 cut(s)	352, 399, 454, 484, 1011
RseI	CAYNNNNRTG	3 cut(s)	269, 636, 1012
SaqAI	TTAA	4 cut(s)	255, 699, 756, 939
SatI	GCNGC	5 cut(s)	32, 63, 534, 537, 661
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	843
SchI	GAGTC	2 cut(s)	554, 585
ScrFI	CCNGG	4 cut(s)	111, 371, 493, 894
SfaNI	GCATC	3 cut(s)	104, 466, 957
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	843
SmiMI	CAYNNNNRTG	3 cut(s)	269, 636, 1012
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SnaBI	TACGTA	1 cut(s)	487
Sse9I	AATT	6 cut(s)	188, 291, 355, 757, 988, 1120
SsiI	CCGC	3 cut(s)	92, 457, 770
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	4 cut(s)	109, 369, 491, 892
StyI	CCWWGG	4 cut(s)	362, 901, 973, 1098
TaaI	ACNGT	5 cut(s)	128, 142, 170, 607, 867
TaiI	ACGT	2 cut(s)	489, 983
TaqI	TCGA	2 cut(s)	601, 849
TasI	AATT	6 cut(s)	188, 291, 355, 757, 988, 1120
TatI	WGTACW	2 cut(s)	351, 1010
TfiI	GAWTC	2 cut(s)	209, 751
Tru1I	TTAA	4 cut(s)	255, 699, 756, 939
Tru9I	TTAA	4 cut(s)	255, 699, 756, 939
TscAI	CASTG	2 cut(s)	131, 890
TseFI	GTSAC	3 cut(s)	52, 373, 509
TseI	GCWGC	5 cut(s)	31, 62, 533, 536, 660
Tsp45I	GTSAC	3 cut(s)	52, 373, 509
TspDTI	ATGAA	3 cut(s)	403, 661, 957
TspGWI	ACGGA	6 cut(s)	254, 259, 372, 493, 603, 749
TspRI	CASTG	2 cut(s)	131, 890
VpaK11BI	GGWCC	1 cut(s)	843
VspI	ATTAAT	2 cut(s)	255, 939
XapI	RAATTY	3 cut(s)	188, 291, 988
XceI	RCATGY	4 cut(s)	352, 502, 1011, 1017
XmnI	GAANNNNTTC	2 cut(s)	741, 1025
XspI	CTAG	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.