MD03G1237600.v1.1
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015705
Physical Location & Seq
Reverse (-)
32274386 .. 32276796
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1237600.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGCACAATTACCTCCTAAAATACCAAGCATGACACAGAATTGGCCATCCTTCCCTCACCAAAGGCTACCCACCATGGCCAATTTCATCCCCACCACCACCACCACTTCTGCCGCTGCCGGCCAACCCTCGTCCAACCAACCGAACCAACAACAACAACAACAATCCCCGTCATACAATTGGATCGACGAGTTCCTCGACTTCTCCTCCGCCAGGCGCCGGGCGCACCGGAGGTCGGCTAGCGACTCCATTGCCTTCTTAGAATCCCCCCTGATACTTGACGAGGAATGCAGGAACTCCACCGCCACTATGATTCATCATCACGGATCGACCAACAACCTCGGCTTCGACAGGCTAGACGACGAGCAACTCATTTCCATGTTCTCCGATGACATGTCGGTGACCGTGCCGCCTACCGTCTCGTCTTCCAGCCTGTCCACGCCGTCCGACCAGAACAGCAATAACGACGAAAACAATATTAACAATGACAATAATAATAACAAGAAGCCATTGATGGTTCATCTGGACCAGCAGCAGCCGAAAACCGAGCCTGGAGAGGTTGAAAGCTCGTCGTGCGAGGCTGACGCTAATACTCAATCTCATCCGCCACCACCAACGTCCCCGGCTGACCCCAAGAGGGTCAAAAGGATTTTGGCAAACCGGCAATCAGCACAGAGGTCGAGAGTGAGAAAGTTGCAATATATTTCAGAGCTTGAACGCAGCGTTACAACATTACAGTCGGAGGTATCGACACTGTCACCAAGGGTTGCATTTCTAGACCACCAGAGGTTGATTCTAAACGTTGATAATAGTGCTCTCAAGCAACGGATTGCTGCTTTGGCTCAGGACAAGCTTTTCAAAGATGCTCATCAAGAGGCACTAAAGAAGGAAATAGAGAGGTTAAGGCAGGTCTATCACCACCAAACCCTAAAGAACATGGGTAAGCAAGGAAACCAAAACTCACAGCAGCATCAAAAGCAACAGCAACAGCAACAGCAGCAGCAGCAATCAAACCCAGACATCATGGTCTGTACGGATCACAATGAGCAGCAAATTCTCAATTGA

Protein Analysis

355

Amino Acids

40.06

Weight (kDa)

6.5

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 210 - 257 2.8e-08 Basic region leucine zipper
bZIP_1 PF00170 212 - 256 8.2e-10 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 898
AccB1I GGYRCC 1 cut(s) 216
AciI CCGC 5 cut(s) 114, 210, 303, 410, 605
AclI AACGTT 1 cut(s) 801
AclWI GGATC 3 cut(s) 191, 334, 1044
AcoI YGGCCR 3 cut(s) 44, 78, 121
AcsI RAATTY 1 cut(s) 1053
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 1033
AfiI CCNNNNNNNGG 4 cut(s) 213, 219, 235, 637
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 563, 716, 859
AjnI CCWGG 2 cut(s) 212, 550
AluBI AGCT 3 cut(s) 567, 712, 853
AluI AGCT 3 cut(s) 567, 712, 853
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 3 cut(s) 191, 334, 1044
AoxI GGCC 3 cut(s) 44, 78, 121
ApoI RAATTY 1 cut(s) 1053
AspLEI GCGC 2 cut(s) 219, 226
AspS9I GGNCC 1 cut(s) 526
AsuC2I CCSGG 2 cut(s) 221, 623
AsuHPI GGTGA 4 cut(s) 50, 412, 750, 908
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 526
BalI TGGCCA 2 cut(s) 46, 80
BanI GGYRCC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 817
BccI CCATC 2 cut(s) 55, 508
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 660, 694
BciT130I CCWGG 2 cut(s) 214, 552
BcnI CCSGG 2 cut(s) 221, 623
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 3 cut(s) 240, 356, 776
BfoI RGCGCY 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 898
Bme1390I CCNGG 4 cut(s) 214, 221, 552, 623
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 526
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 4 cut(s) 214, 221, 552, 623
BmsI GCATC 2 cut(s) 853, 979
BmtI GCTAGC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 2 cut(s) 221, 623
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 75, 340, 621, 761
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 219, 235, 637
Bse118I RCCGGY 2 cut(s) 119, 660
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 2 cut(s) 214, 552
BseDI CCNNGG 4 cut(s) 75, 340, 621, 761
BseGI GGATG 3 cut(s) 47, 87, 601
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 4 cut(s) 213, 219, 235, 637
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 857
BseRI GAGGAG 1 cut(s) 196
BshFI GGCC 3 cut(s) 46, 80, 123
BshNI GGYRCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 817
BsiSI CCGG 5 cut(s) 120, 220, 229, 623, 661
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 4 cut(s) 213, 219, 235, 637
BsmAI GTCTC 1 cut(s) 424
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 46, 80, 123
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 3 cut(s) 183, 326, 1036
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 5 cut(s) 114, 210, 303, 410, 605
BspANI GGCC 3 cut(s) 46, 80, 123
BspCNI CTCAG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 898
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 3 cut(s) 191, 334, 1044
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 2 cut(s) 119, 660
BssAI RCCGGY 2 cut(s) 119, 660
BssECI CCNNGG 4 cut(s) 75, 340, 621, 761
BssMI GATC 3 cut(s) 183, 326, 1036
BssNI GRCGYC 1 cut(s) 217
BssT1I CCWWGG 2 cut(s) 75, 761
Bst2UI CCWGG 2 cut(s) 214, 552
Bst4CI ACNGT 4 cut(s) 406, 418, 738, 756
BstACI GRCGYC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 121, 241
BstDEI CTNAG 2 cut(s) 259, 843
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 400
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 3 cut(s) 47, 87, 601
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 2 cut(s) 219, 226
BstKTI GATC 3 cut(s) 186, 329, 1039
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 183, 326, 1036
BstMWI GCNNNNNNNGC 6 cut(s) 223, 573, 839, 976, 997, 1003
BstNI CCWGG 2 cut(s) 214, 552
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 4 cut(s) 212, 219, 550, 621
BstV2I GAAGAC 1 cut(s) 417
BsuRI GGCC 3 cut(s) 46, 80, 123
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 47, 87, 601
BtsIMutI CAGTG 1 cut(s) 752
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 121, 241
CfoI GCGC 2 cut(s) 219, 226
Cfr10I RCCGGY 2 cut(s) 119, 660
Cfr13I GGNCC 1 cut(s) 526
CseI GACGC 1 cut(s) 593
Csp6I GTAC 1 cut(s) 1032
CviAII CATG 6 cut(s) 31, 76, 379, 394, 937, 1024
CviQI GTAC 1 cut(s) 1032
DdeI CTNAG 2 cut(s) 259, 843
DinI GGCGCC 1 cut(s) 218
DpnI GATC 3 cut(s) 185, 328, 1038
DpnII GATC 3 cut(s) 183, 326, 1036
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 3 cut(s) 44, 78, 121
EciI GGCGGA 2 cut(s) 199, 594
Eco130I CCWWGG 2 cut(s) 75, 761
Eco47I GGWCC 1 cut(s) 526
Eco91I GGTNACC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 212, 550
EcoT14I CCWWGG 2 cut(s) 75, 761
EgeI GGCGCC 1 cut(s) 218
EheI GGCGCC 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 75, 761
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 6 cut(s) 34, 79, 382, 397, 940, 1027
FaiI YATR 9 cut(s) 32, 77, 175, 311, 380, 395, 702, 938, 1025
FaqI GGGAC 1 cut(s) 604
FatI CATG 6 cut(s) 30, 75, 378, 393, 936, 1023
FokI GGATG 3 cut(s) 34, 74, 588
FspBI CTAG 3 cut(s) 240, 356, 776
GlaI GCGC 2 cut(s) 218, 225
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 3 cut(s) 46, 80, 123
HapII CCGG 5 cut(s) 120, 220, 229, 623, 661
HgaI GACGC 1 cut(s) 593
HhaI GCGC 2 cut(s) 219, 226
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 6 cut(s) 34, 79, 382, 397, 940, 1027
Hin6I GCGC 2 cut(s) 217, 224
HinP1I GCGC 2 cut(s) 217, 224
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 4 cut(s) 245, 263, 313, 793
HpaII CCGG 5 cut(s) 120, 220, 229, 623, 661
HphI GGTGA 4 cut(s) 50, 412, 750, 908
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 4 cut(s) 388, 448, 709, 742
Hpy188III TCNNGA 5 cut(s) 524, 681, 776, 845, 872
Hpy8I GTNNAC 1 cut(s) 438
Hpy99I CGWCG 4 cut(s) 191, 365, 470, 574
HpyAV CCTTC 3 cut(s) 61, 265, 880
HpyCH4III ACNGT 4 cut(s) 406, 418, 738, 756
HpyCH4IV ACGT 2 cut(s) 617, 801
HpyCH4V TGCA 3 cut(s) 291, 697, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 223, 573, 839, 976, 997, 1003
HpyF3I CTNAG 2 cut(s) 259, 843
HpySE526I ACGT 2 cut(s) 617, 801
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 6 cut(s) 34, 79, 382, 397, 940, 1027
HspAI GCGC 2 cut(s) 217, 224
KasI GGCGCC 1 cut(s) 216
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 183, 326, 1036
LweI GCATC 2 cut(s) 853, 979
MaeI CTAG 3 cut(s) 240, 356, 776
MaeII ACGT 2 cut(s) 617, 801
MaeIII GTNAC 3 cut(s) 400, 724, 756
MalI GATC 3 cut(s) 185, 328, 1038
MboI GATC 3 cut(s) 183, 326, 1036
MboII GAAGA 1 cut(s) 417
MfeI CAATTG 2 cut(s) 178, 1060
MhlI GDGCHC 1 cut(s) 817
MlsI TGGCCA 2 cut(s) 46, 80
MluCI AATT 6 cut(s) 8, 40, 82, 178, 1053, 1060
MluNI TGGCCA 2 cut(s) 46, 80
Mly113I GGCGCC 1 cut(s) 217
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 3 cut(s) 159, 471, 720
Mox20I TGGCCA 2 cut(s) 46, 80
MroNI GCCGGC 1 cut(s) 119
MscI TGGCCA 2 cut(s) 46, 80
MseI TTAA 2 cut(s) 480, 902
MslI CAYNNNNRTG 2 cut(s) 377, 398
Msp20I TGGCCA 2 cut(s) 46, 80
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 5 cut(s) 120, 220, 229, 623, 661
MspR9I CCNGG 4 cut(s) 214, 221, 552, 623
MunI CAATTG 2 cut(s) 178, 1060
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 214, 552
MwoI GCNNNNNNNGC 6 cut(s) 223, 573, 839, 976, 997, 1003
NaeI GCCGGC 1 cut(s) 121
NarI GGCGCC 1 cut(s) 217
NciI CCSGG 2 cut(s) 221, 623
NcoI CCATGG 1 cut(s) 75
NdeII GATC 3 cut(s) 183, 326, 1036
NgoMIV GCCGGC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 6 cut(s) 34, 79, 382, 397, 940, 1027
NlaIV GGNNCC 1 cut(s) 218
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 400, 756
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 746
PctI GAATGC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 263, 313, 793
PflFI GACNNNGTC 1 cut(s) 754
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 239
PscI ACATGT 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 801
Psp6I CCWGG 2 cut(s) 212, 550
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 212, 550
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 754
RsaI GTAC 1 cut(s) 1033
RsaNI GTAC 1 cut(s) 1032
RseI CAYNNNNRTG 2 cut(s) 377, 398
SaqAI TTAA 2 cut(s) 480, 902
Sau3AI GATC 3 cut(s) 183, 326, 1036
Sau96I GGNCC 1 cut(s) 526
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 4 cut(s) 214, 221, 552, 623
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 2 cut(s) 853, 979
SfoI GGCGCC 1 cut(s) 218
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 2 cut(s) 377, 398
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 6 cut(s) 8, 40, 82, 178, 1053, 1060
SsiI CCGC 5 cut(s) 114, 210, 303, 410, 605
SspDI GGCGCC 1 cut(s) 216
SspI AATATT 1 cut(s) 478
SspMI CTAG 3 cut(s) 240, 356, 776
StyD4I CCNGG 4 cut(s) 212, 219, 550, 621
StyI CCWWGG 2 cut(s) 75, 761
TaaI ACNGT 4 cut(s) 406, 418, 738, 756
TaiI ACGT 2 cut(s) 620, 804
TaqI TCGA 6 cut(s) 186, 198, 329, 348, 680, 749
TasI AATT 6 cut(s) 8, 40, 82, 178, 1053, 1060
TauI GCSGC 2 cut(s) 116, 412
TfiI GAWTC 3 cut(s) 263, 313, 793
Tru1I TTAA 2 cut(s) 480, 902
Tru9I TTAA 2 cut(s) 480, 902
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 2 cut(s) 400, 756
Tsp45I GTSAC 2 cut(s) 400, 756
TspDTI ATGAA 3 cut(s) 76, 305, 509
TspGWI ACGGA 3 cut(s) 339, 841, 1049
TspRI CASTG 1 cut(s) 759
Tth111I GACNNNGTC 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 526
XagI CCTNNNNNAGG 1 cut(s) 211
XapI RAATTY 1 cut(s) 1053
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 397
XspI CTAG 3 cut(s) 240, 356, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.