Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006847.1

Orthogroup ID

OG0015705

Physical Location & Seq

Genomic Coordinates Reverse (-)

108184 .. 109934

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006847.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggcgcaattacctcctaaaatacccagcatgactcagaactgggcgccattcccccaccacagaataatgccctcaatggccaacttcctcccctcctccgccgccgtcaaccaccctccctctccccctcacaacccccagcagcagcagcaacagtcctcttcgtgttggatggacgagttcctagacttctcctccgcccggcgcggggcccaccggcggtcgtccagcgactccatcgccttcctggagtcgccgctgaatgtgctcgacgaggagtgcgtgaggaaccccaccgtccacggcgccaacaacatcggcgcctcgttcgaccgcctcgacgacgagcagctcatgtccatgttctccgacgacgtcgccgtccccccgaccgtcacctcctcgtccaacccctccacgccgtccgaccagaacagcaacaacgacgagattcacgagaacgtgaacaacaacaatgttattcaccggccgttgatgcatctcacgatcgacggccagcagcagcagccgaagagcgagcccggcgagggcgagagcgagtgcgatcccagcgacccgcattctcagtcccatgcgccactgccgacctcccccgccgatcccaagagggtaaaaagaatcttggcgaatcggcaatcggcccagcggtccagagtgagaaagctgcagtacatatcggagctcgaacgcagcgtcacatcattgcagtcggaggtgtcggcgctttcaccgagggttgcgtttctagatcaccagaggttgattctcaatgtggataacagtgctctcaagcaaaggattgctgctttggctcaagataagctcttcaaagatgctcatcaagaggcattaaagaaggaaatagagagattaaggcaggtttatcagcaccaaaccctaaagaagatgggaaacaatggcaataacaacaaccaaaacgccgccgcagctccaccgcaacagcagcagcaagcacaccaccacaacccggcggacatcatgctctgtacggaccacaaggagcagcagcagattatgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

355

Amino Acids

39.74

Weight (kDa)

6.3

Isoelectric Point (pI)

77.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015705)

Species	Orthologous Gene IDs
malus_domestica	MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica	Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis	pycom03g18330 pycom11g22760
rosa_chinensis	RchiOBHm_Chr5g0031811
rosa_laevigata	RLG00000033348
rosa_multiflora	Rmu_sc0006847.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048460
rosa_rugosa	Rorug05G0127700
rosa_samantha	Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana	Rw5G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AatII	GACGTC	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	892
AccB1I	GGYRCC	3 cut(s)	46, 308, 323
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	2 cut(s)	563, 617
AcoI	YGGCCR	3 cut(s)	81, 491, 517
AcyI	GRCGYC	4 cut(s)	47, 309, 324, 378
AfaI	GTAC	2 cut(s)	695, 1033
AfiI	CCNNNNNNNGG	6 cut(s)	204, 210, 211, 222, 551, 1012
AgsI	TTSAA	1 cut(s)	853
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	5 cut(s)	355, 688, 706, 847, 974
AluI	AGCT	5 cut(s)	355, 688, 706, 847, 974
Alw21I	GWGCWC	3 cut(s)	273, 708, 811
AlwI	GGATC	2 cut(s)	563, 617
AoxI	GGCC	5 cut(s)	81, 213, 491, 517, 663
ApaI	GGGCCC	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
AspLEI	GCGC	7 cut(s)	7, 49, 210, 311, 326, 601, 748
AspS9I	GGNCC	5 cut(s)	213, 214, 664, 672, 1036
AsuC2I	CCSGG	3 cut(s)	205, 546, 1013
AsuHPI	GGTGA	4 cut(s)	391, 479, 744, 767
AvaII	GGWCC	2 cut(s)	672, 1036
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	3 cut(s)	46, 308, 323
BanII	GRGCYC	3 cut(s)	217, 546, 708
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	3 cut(s)	273, 708, 811
BccI	CCATC	3 cut(s)	169, 248, 925
BceAI	ACGGC	6 cut(s)	92, 322, 368, 409, 478, 532
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	3 cut(s)	205, 546, 1013
BfaI	CTAG	2 cut(s)	188, 770
BfmI	CTRYAG	1 cut(s)	689
BfoI	RGCGCY	4 cut(s)	50, 312, 327, 749
BfuAI	ACCTGC	1 cut(s)	892
Bme1390I	CCNGG	4 cut(s)	205, 251, 546, 1013
Bme18I	GGWCC	2 cut(s)	672, 1036
BmgT120I	GGNCC	5 cut(s)	213, 214, 664, 672, 1036
BmiI	GGNNCC	6 cut(s)	48, 214, 215, 293, 310, 325
BmrFI	CCNGG	4 cut(s)	205, 251, 546, 1013
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	489, 511, 847
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	2 cut(s)	797, 822
BpuMI	CCSGG	3 cut(s)	205, 546, 1013
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	4 cut(s)	47, 309, 324, 378
BsaJI	CCNNGG	2 cut(s)	304, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	6 cut(s)	204, 210, 211, 222, 551, 1012
Bse118I	RCCGGY	2 cut(s)	219, 489
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	725
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	304, 755
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	6 cut(s)	204, 210, 211, 222, 551, 1012
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	2 cut(s)	50, 602
BseNI	ACTGG	1 cut(s)	47
BseRI	GAGGAG	4 cut(s)	88, 187, 293, 394
BseSI	GKGCMC	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	491
BseYI	CCCAGC	4 cut(s)	26, 141, 572, 666
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	5 cut(s)	227, 337, 396, 494, 513
BshFI	GGCC	5 cut(s)	83, 215, 493, 519, 665
BshNI	GGYRCC	3 cut(s)	46, 308, 323
BsiEI	CGRYCG	5 cut(s)	227, 337, 396, 494, 513
BsiHKAI	GWGCWC	3 cut(s)	273, 708, 811
BsiSI	CCGG	5 cut(s)	205, 220, 490, 546, 1013
BslFI	GGGAC	2 cut(s)	371, 577
BslI	CCNNNNNNNGG	6 cut(s)	204, 210, 211, 222, 551, 1012
BsmFI	GGGAC	2 cut(s)	371, 577
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	5 cut(s)	83, 215, 493, 519, 665
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	5 cut(s)	217, 273, 546, 708, 811
Bsp143I	GATC	4 cut(s)	510, 568, 622, 772
BspANI	GGCC	5 cut(s)	83, 215, 493, 519, 665
BspCNI	CTCAG	2 cut(s)	49, 601
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	6 cut(s)	48, 214, 215, 293, 310, 325
BspMAI	CTGCAG	1 cut(s)	693
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	2 cut(s)	563, 617
BspQI	GCTCTTC	2 cut(s)	530, 854
BspT107I	GGYRCC	3 cut(s)	46, 308, 323
BsrDI	GCAATG	1 cut(s)	725
BsrFI	RCCGGY	2 cut(s)	219, 489
BsrI	ACTGG	1 cut(s)	47
BssAI	RCCGGY	2 cut(s)	219, 489
BssECI	CCNNGG	2 cut(s)	304, 755
BssMI	GATC	4 cut(s)	510, 568, 622, 772
BssNI	GRCGYC	4 cut(s)	47, 309, 324, 378
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	4 cut(s)	159, 301, 397, 806
Bst6I	CTCTTC	3 cut(s)	169, 530, 854
BstACI	GRCGYC	4 cut(s)	47, 309, 324, 378
BstC8I	GCNNGC	3 cut(s)	521, 542, 996
BstDEI	CTNAG	2 cut(s)	36, 588
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	4 cut(s)	50, 312, 327, 749
BstHHI	GCGC	7 cut(s)	7, 49, 210, 311, 326, 601, 748
BstKTI	GATC	4 cut(s)	513, 571, 625, 775
BstMBI	GATC	4 cut(s)	510, 568, 622, 772
BstMCI	CGRYCG	5 cut(s)	227, 337, 396, 494, 513
BstMWI	GCNNNNNNNGC	9 cut(s)	151, 268, 499, 529, 546, 573, 833, 971, 988
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	203, 249, 544, 1011
BstSFI	CTRYAG	1 cut(s)	689
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	491
BsuRI	GGCC	5 cut(s)	83, 215, 493, 519, 665
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	2 cut(s)	602, 811
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	3 cut(s)	521, 542, 996
CfoI	GCGC	7 cut(s)	7, 49, 210, 311, 326, 601, 748
Cfr10I	RCCGGY	2 cut(s)	219, 489
Cfr13I	GGNCC	5 cut(s)	213, 214, 664, 672, 1036
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	694, 1032
CviAII	CATG	5 cut(s)	31, 358, 364, 596, 1024
CviQI	GTAC	2 cut(s)	694, 1032
DdeI	CTNAG	2 cut(s)	36, 588
DinI	GGCGCC	3 cut(s)	48, 310, 325
DpnI	GATC	4 cut(s)	512, 570, 624, 774
DpnII	GATC	4 cut(s)	510, 568, 622, 772
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	3 cut(s)	81, 491, 517
EagI	CGGCCG	1 cut(s)	491
Eam1104I	CTCTTC	3 cut(s)	169, 530, 854
EarI	CTCTTC	3 cut(s)	169, 530, 854
EciI	GGCGGA	3 cut(s)	91, 190, 1031
Ecl136II	GAGCTC	1 cut(s)	706
EclXI	CGGCCG	1 cut(s)	491
Eco24I	GRGCYC	3 cut(s)	217, 546, 708
Eco47I	GGWCC	2 cut(s)	672, 1036
Eco52I	CGGCCG	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	3 cut(s)	217, 546, 708
EgeI	GGCGCC	3 cut(s)	48, 310, 325
EheI	GGCGCC	3 cut(s)	48, 310, 325
FaeI	CATG	5 cut(s)	34, 361, 367, 599, 1027
FaiI	YATR	7 cut(s)	32, 359, 365, 597, 698, 1025, 1061
FaqI	GGGAC	2 cut(s)	371, 577
FatI	CATG	5 cut(s)	30, 357, 363, 595, 1023
FauI	CCCGC	3 cut(s)	203, 588, 625
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	3 cut(s)	217, 546, 708
FspBI	CTAG	2 cut(s)	188, 770
GlaI	GCGC	7 cut(s)	6, 48, 209, 310, 325, 600, 747
GsaI	CCCAGC	4 cut(s)	30, 145, 576, 670
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	4 cut(s)	50, 312, 327, 749
HaeIII	GGCC	5 cut(s)	83, 215, 493, 519, 665
HapII	CCGG	5 cut(s)	205, 220, 490, 546, 1013
HgaI	GACGC	1 cut(s)	706
HhaI	GCGC	7 cut(s)	7, 49, 210, 311, 326, 601, 748
Hin1I	GRCGYC	4 cut(s)	47, 309, 324, 378
Hin1II	CATG	5 cut(s)	34, 361, 367, 599, 1027
Hin6I	GCGC	7 cut(s)	5, 47, 208, 309, 324, 599, 746
HinP1I	GCGC	7 cut(s)	5, 47, 208, 309, 324, 599, 746
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	7 cut(s)	34, 236, 254, 454, 642, 652, 787
HpaII	CCGG	5 cut(s)	205, 220, 490, 546, 1013
HphI	GGTGA	4 cut(s)	391, 479, 744, 767
Hpy166II	GTNNAC	3 cut(s)	112, 304, 469
Hpy188I	TCNGA	5 cut(s)	39, 373, 430, 703, 736
Hpy188III	TCNNGA	6 cut(s)	458, 508, 675, 770, 839, 866
Hpy8I	GTNNAC	3 cut(s)	112, 304, 469
Hpy99I	CGWCG	8 cut(s)	278, 347, 350, 377, 380, 383, 452, 518
HpyAV	CCTTC	2 cut(s)	256, 874
HpyCH4III	ACNGT	4 cut(s)	159, 301, 397, 806
HpyCH4IV	ACGT	2 cut(s)	378, 465
HpyCH4V	TGCA	3 cut(s)	502, 691, 730
HpyF10VI	GCNNNNNNNGC	9 cut(s)	151, 268, 499, 529, 546, 573, 833, 971, 988
HpyF3I	CTNAG	2 cut(s)	36, 588
HpySE526I	ACGT	2 cut(s)	378, 465
Hsp92I	GRCGYC	4 cut(s)	47, 309, 324, 378
Hsp92II	CATG	5 cut(s)	34, 361, 367, 599, 1027
HspAI	GCGC	7 cut(s)	5, 47, 208, 309, 324, 599, 746
KasI	GGCGCC	3 cut(s)	46, 308, 323
Kzo9I	GATC	4 cut(s)	510, 568, 622, 772
LguI	GCTCTTC	2 cut(s)	530, 854
LmnI	GCTCC	3 cut(s)	703, 979, 1045
LweI	GCATC	3 cut(s)	489, 511, 847
MaeI	CTAG	2 cut(s)	188, 770
MaeII	ACGT	2 cut(s)	378, 465
MaeIII	GTNAC	2 cut(s)	397, 718
MalI	GATC	4 cut(s)	512, 570, 624, 774
MboI	GATC	4 cut(s)	510, 568, 622, 772
MboII	GAAGA	4 cut(s)	156, 547, 841, 940
MhlI	GDGCHC	5 cut(s)	217, 273, 546, 708, 811
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	2 cut(s)	8, 1063
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	3 cut(s)	47, 309, 324
MlyI	GAGTC	3 cut(s)	28, 230, 263
MmeI	TCCRAC	5 cut(s)	152, 396, 435, 453, 714
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	2 cut(s)	875, 896
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	262, 670
MspI	CCGG	5 cut(s)	205, 220, 490, 546, 1013
MspR9I	CCNGG	4 cut(s)	205, 251, 546, 1013
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	9 cut(s)	151, 268, 499, 529, 546, 573, 833, 971, 988
NarI	GGCGCC	3 cut(s)	47, 309, 324
NciI	CCSGG	3 cut(s)	205, 546, 1013
NdeII	GATC	4 cut(s)	510, 568, 622, 772
NlaIII	CATG	5 cut(s)	34, 361, 367, 599, 1027
NlaIV	GGNNCC	6 cut(s)	48, 214, 215, 293, 310, 325
NmuCI	GTSAC	2 cut(s)	397, 718
NsiI	ATGCAT	1 cut(s)	504
PciSI	GCTCTTC	2 cut(s)	530, 854
PcsI	WCGNNNNNNNCGW	5 cut(s)	282, 339, 381, 456, 714
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	454, 642, 652, 787
PflFI	GACNNNGTC	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	249
Ple19I	CGATCG	1 cut(s)	513
PleI	GAGTC	3 cut(s)	28, 230, 262
PluTI	GGCGCC	3 cut(s)	50, 312, 327
PpsI	GAGTC	3 cut(s)	28, 230, 262
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	4 cut(s)	26, 141, 572, 666
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	6 cut(s)	48, 214, 215, 293, 310, 325
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	5 cut(s)	213, 214, 664, 672, 1036
PstI	CTGCAG	1 cut(s)	693
PsyI	GACNNNGTC	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	695, 1033
RsaNI	GTAC	2 cut(s)	694, 1032
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	708
SapI	GCTCTTC	2 cut(s)	530, 854
SaqAI	TTAA	2 cut(s)	875, 896
Sau3AI	GATC	4 cut(s)	510, 568, 622, 772
Sau96I	GGNCC	5 cut(s)	213, 214, 664, 672, 1036
SchI	GAGTC	3 cut(s)	28, 230, 263
ScrFI	CCNGG	4 cut(s)	205, 251, 546, 1013
SduI	GDGCHC	5 cut(s)	217, 273, 546, 708, 811
SfaNI	GCATC	3 cut(s)	489, 511, 847
SfcI	CTRYAG	1 cut(s)	689
SfoI	GGCGCC	3 cut(s)	48, 310, 325
SgrAI	CRCCGGYG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	672, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	812, 837
SmoI	CTYRAG	2 cut(s)	812, 837
Sse9I	AATT	2 cut(s)	8, 1063
SspDI	GGCGCC	3 cut(s)	46, 308, 323
SspMI	CTAG	2 cut(s)	188, 770
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	4 cut(s)	203, 249, 544, 1011
TaaI	ACNGT	4 cut(s)	159, 301, 397, 806
TaiI	ACGT	2 cut(s)	381, 468
TaqI	TCGA	5 cut(s)	273, 333, 342, 513, 708
TasI	AATT	2 cut(s)	8, 1063
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	4 cut(s)	107, 262, 968, 971
TfiI	GAWTC	4 cut(s)	454, 642, 652, 787
Tru1I	TTAA	2 cut(s)	875, 896
Tru9I	TTAA	2 cut(s)	875, 896
TscAI	CASTG	2 cut(s)	609, 811
TseFI	GTSAC	2 cut(s)	397, 718
Tsp45I	GTSAC	2 cut(s)	397, 718
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	2 cut(s)	609, 811
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	672, 1036
XbaI	TCTAGA	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	188, 770
ZraI	GACGTC	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.