Rorug05G0127700
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015705
Physical Location & Seq
Reverse (-)
11325662 .. 11326720
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0127700.1

Sequence Viewer

Length: 891 bp
ATGTCATCGTCATCAGGGGATATTGGTGGCATAAATAGCAAATATTGGGCTAAGGTCTGGGGGGCACGTACTCCTCCAAAAGTAAAATGCTTTGTCTGGAGGCTTTTGAAGAATATTATTCCTACAAAGGATGCTCTCATGCAACGTAGAGTTGCTATGGTGGACCCCAAGTGCATGTTTTGCATGGCTGAAGCGGAAACCGGTACGCATTTGTTTAAGTCTTGTCTAGCTTTACACTGTTTCTGGTTATTTGGCCCTCTGAAATTAAATGCTACTGCACACCCAACCAACTGTGTCAGAGATTGGGTCTTATATATGATTGACTCCCTGAGTGGGGATCAGCGGGATTTTTTCTTCATGGGCTTATGGGCCATTTGGACAGAGAGGAATAAGTTAGTGTGGTTCTTCCAGCCTATGTCTATGATCCAGTGGTCTACTCAAATGCTTGAGGATTTTCAAAAGTACCACCCGAAGGCAGTTAGGAAGCAGCGAAGGCCTCTAACTAAGTGGCAAAATCCTCCAAGTGGTCGTCTGAAAATCAATGTTGATGGGGCTTTTAGAGCTGAGGAAGGGACTAGAGGTATTGGGGTAGTTGTCAGGAATGATGCTGGTATGGGTATTGCTGCTTTGGCCAGGACTTTTCTACATGCACACTCGGTTCTTAATATGGAAGTGGAGGCGTGTAGGGCTGGCTTACTTCTTGGTATTCACCAAGGTTGGACTAACATAGATGTTGAAAGTGACTCTGCCATCCTGATTGATGCTCTCAATAGTAGAGAGAATAATTTCTCCGAGGATGTTCTGTACGAGGATTATTGTAACTGTTCTGCTGTAGCTTGGGGTTCAGGTTTTATGTCCCCCTCCCCCCTCAATGCAAAATTCTACTATTAA

Protein Analysis

296

Amino Acids

33.64

Weight (kDa)

8.82

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 13 - 82 1e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 181 - 270 9.8e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 434
AciI CCGC 2 cut(s) 194, 343
AclWI GGATC 2 cut(s) 345, 418
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 4 cut(s) 70, 205, 464, 806
AfiI CCNNNNNNNGG 4 cut(s) 333, 334, 472, 524
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 3 cut(s) 109, 458, 737
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 3 cut(s) 230, 563, 836
AluI AGCT 3 cut(s) 230, 563, 836
AlwI GGATC 2 cut(s) 345, 418
AoxI GGCC 4 cut(s) 253, 369, 494, 630
ApeKI GCWGC 2 cut(s) 487, 623
ApoI RAATTY 1 cut(s) 878
AsiGI ACCGGT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 3 cut(s) 163, 254, 369
AsuHPI GGTGA 1 cut(s) 701
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 499, 610
BccI CCATC 2 cut(s) 542, 758
BciT130I CCWGG 1 cut(s) 634
BfaI CTAG 2 cut(s) 227, 576
BfmI CTRYAG 1 cut(s) 831
BisI GCNGC 2 cut(s) 488, 624
BlsI GCNGC 2 cut(s) 489, 625
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 163, 254, 369
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 3 cut(s) 121, 595, 751
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 2 cut(s) 51, 564
BpuEI CTTGAG 1 cut(s) 467
BsaAI YACGTR 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 712, 792
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 334, 472, 524
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 712, 792
BseGI GGATG 3 cut(s) 136, 750, 802
BseLI CCNNNNNNNGG 4 cut(s) 333, 334, 472, 524
BseMII CTCAG 2 cut(s) 320, 555
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 2 cut(s) 499, 610
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 4 cut(s) 255, 371, 496, 632
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 586, 841
BslI CCNNNNNNNGG 4 cut(s) 333, 334, 472, 524
BsmFI GGGAC 2 cut(s) 586, 841
BsnI GGCC 4 cut(s) 255, 371, 496, 632
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 337, 423
BspACI CCGC 2 cut(s) 194, 343
BspANI GGCC 4 cut(s) 255, 371, 496, 632
BspCNI CTCAG 2 cut(s) 321, 556
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 345, 418
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 712, 792
BssMI GATC 2 cut(s) 337, 423
BssT1I CCWWGG 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 3 cut(s) 239, 293, 824
BstAPI GCANNNNNTGC 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 4 cut(s) 51, 329, 504, 564
BstF5I GGATG 3 cut(s) 136, 750, 802
BstKTI GATC 2 cut(s) 340, 426
BstMBI GATC 2 cut(s) 337, 423
BstMWI GCNNNNNNNGC 6 cut(s) 36, 180, 493, 560, 629, 686
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 2 cut(s) 178, 650
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 499, 610
BsuRI GGCC 4 cut(s) 255, 371, 496, 632
BtsCI GGATG 3 cut(s) 136, 750, 802
BtsIMutI CAGTG 2 cut(s) 235, 434
Cac8I GCNNGC 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 163, 254, 369
Csp6I GTAC 4 cut(s) 69, 204, 463, 805
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 5 cut(s) 139, 175, 184, 358, 647
CviQI GTAC 4 cut(s) 69, 204, 463, 805
DdeI CTNAG 4 cut(s) 51, 329, 504, 564
DpnI GATC 2 cut(s) 339, 425
DpnII GATC 2 cut(s) 337, 423
EaeI YGGCCR 1 cut(s) 630
Eco130I CCWWGG 1 cut(s) 712
Eco147I AGGCCT 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 5 cut(s) 142, 178, 187, 361, 650
FaqI GGGAC 2 cut(s) 586, 841
FatI CATG 5 cut(s) 138, 174, 183, 357, 646
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 488, 624
FokI GGATG 3 cut(s) 143, 737, 809
Fsp4HI GCNGC 2 cut(s) 488, 624
FspBI CTAG 2 cut(s) 227, 576
GluI GCNGC 2 cut(s) 488, 624
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 4 cut(s) 255, 371, 496, 632
HapII CCGG 1 cut(s) 201
Hin1II CATG 5 cut(s) 142, 178, 187, 361, 650
HinfI GANTC 2 cut(s) 323, 743
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 2 cut(s) 163, 435
Hpy188I TCNGA 4 cut(s) 261, 299, 534, 793
Hpy188III TCNNGA 3 cut(s) 97, 598, 754
Hpy8I GTNNAC 2 cut(s) 163, 435
HpyAV CCTTC 3 cut(s) 466, 486, 563
HpyCH4III ACNGT 3 cut(s) 239, 293, 824
HpyCH4IV ACGT 2 cut(s) 67, 145
HpyCH4V TGCA 6 cut(s) 142, 174, 183, 278, 650, 875
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 180, 493, 560, 629, 686
HpyF3I CTNAG 4 cut(s) 51, 329, 504, 564
HpySE526I ACGT 2 cut(s) 67, 145
Hsp92II CATG 5 cut(s) 142, 178, 187, 361, 650
Kzo9I GATC 2 cut(s) 337, 423
Lsp1109I GCAGC 2 cut(s) 499, 610
LweI GCATC 3 cut(s) 121, 595, 751
MaeI CTAG 2 cut(s) 227, 576
MaeII ACGT 2 cut(s) 67, 145
MaeIII GTNAC 2 cut(s) 740, 818
MalI GATC 2 cut(s) 339, 425
MboI GATC 2 cut(s) 337, 423
MboII GAAGA 3 cut(s) 121, 346, 397
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 3 cut(s) 263, 784, 878
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 2 cut(s) 317, 737
MmeI TCCRAC 1 cut(s) 698
Mox20I TGGCCA 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 632
MseI TTAA 4 cut(s) 216, 266, 663, 889
Msp20I TGGCCA 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 6 cut(s) 36, 180, 493, 560, 629, 686
NdeII GATC 2 cut(s) 337, 423
NlaIII CATG 5 cut(s) 142, 178, 187, 361, 650
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 740
NspI RCATGY 2 cut(s) 178, 650
PceI AGGCCT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 785
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 2 cut(s) 489, 625
PleI GAGTC 2 cut(s) 317, 737
PpsI GAGTC 2 cut(s) 317, 737
Ppu21I YACGTR 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 3 cut(s) 163, 254, 369
RsaI GTAC 4 cut(s) 70, 205, 464, 806
RsaNI GTAC 4 cut(s) 69, 204, 463, 805
SaqAI TTAA 4 cut(s) 216, 266, 663, 889
SatI GCNGC 2 cut(s) 488, 624
Sau3AI GATC 2 cut(s) 337, 423
Sau96I GGNCC 3 cut(s) 163, 254, 369
SchI GAGTC 2 cut(s) 317, 737
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 1 cut(s) 67
SetI ASST 9 cut(s) 57, 70, 148, 232, 565, 583, 718, 838, 850
SfaNI GCATC 3 cut(s) 121, 595, 751
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 3 cut(s) 263, 784, 878
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 2 cut(s) 194, 343
SspI AATATT 2 cut(s) 44, 115
SspMI CTAG 2 cut(s) 227, 576
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 239, 293, 824
TaiI ACGT 2 cut(s) 70, 148
TasI AATT 3 cut(s) 263, 784, 878
Tru1I TTAA 4 cut(s) 216, 266, 663, 889
Tru9I TTAA 4 cut(s) 216, 266, 663, 889
TscAI CASTG 2 cut(s) 242, 434
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 2 cut(s) 487, 623
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 1 cut(s) 346
TspRI CASTG 2 cut(s) 242, 434
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 878
XceI RCATGY 2 cut(s) 178, 650
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 2 cut(s) 227, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.