Rroxscaffold_1G00048460
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015705
Physical Location & Seq
Forward (+)
68439186 .. 68441910
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048460.1

Sequence Viewer

Length: 1077 bp
ATGGCGCAATTACCTCCTAAAATACCCAGCATGACTCAGAACTGGGCGCCATTCCCCCACCACAGAATAATGCCCTCAATGGCCAACTTCCTCCCCTCCTCCGCCGCCGTCAACCACCCTCCCTCTCCCCCTCACACCCAGCAGCAGCAGCAGCAACAGTCCTCTTCGTGTTGGATGGACGAGTTCCTAGACTTCTCCTCCGCCCGGCGCGGGGCCCACCGGCGCTCGGCCAGCGACTCCATCGCGTTCCTGGAGTCGCCGCTGAATGTGCTCGACGAGGAGTGCGGGAGGAACCCCACCGTCCACGGCGCGAACAACATCGGCGCCTCGTTCGACCGCCTCGACGACGAGCAGCTCATGTCCATGTTCTCCGACGACGTCGCCGTCCCCCAGACAGTCACCTCCTCGTCGAACCCCTCCACGCCATCCGACCAGAACAGCAACAACGACGAGATTCACGAGAACGTGAACAACAACAATGTTAATCACCGGCCGTTGATGCATCTCACGATCGACGGTCAGCAGCAGCAGCAGCAGCCGAAGAGCGAGCCCGGCGAGGGCGAGAGCGAGTGCGATCCCAGCGACCCGCATTCTCAGTCGCATGCGCCACTGCCGACCTCCCCCGCCGATCCCAAGAGGGTAAAAAGAATCTTGGCGAATCGGCAATCGGCCCAGCGGTCCAGAGTGAGAAAGCTGCAGTACATATCGGAGCTCGAACGCAGCGTCACATCATTGCAGTCGGAGGTGTCGGCGCTTTCACCGAGGGTTGCATTTCTAGATCACCAGAGGTTGATTCTCAATGTGGATAACAGTGCTCTCAAGCAAAGGATTGCTGCTTTGGCTCAAGATAAGCACTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAGATAGAGAGATTAAGGCAGGTTTATCAGCACCAAACCCTAAAGAAGATGGGAAACAATGGCAATAACAACCAAAACGCCGCCGCAGCTCCACCGCAACAGCAGCAGCAGCAGCAAGCACACCACCACAACCCGGCGGACATCATGCTCTGTACGGATCACAAGGAGCAGCGGCAGATTATGAATTGA

Protein Analysis

358

Amino Acids

40.18

Weight (kDa)

6.43

Isoelectric Point (pI)

76.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 210 - 257 9.5e-09 Basic region leucine zipper
bZIP_1 PF00170 212 - 257 2.7e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AatII GACGTC 1 cut(s) 381
Acc36I ACCTGC 1 cut(s) 898
AccB1I GGYRCC 2 cut(s) 46, 323
AccII CGCG 3 cut(s) 210, 245, 311
AclWI GGATC 3 cut(s) 569, 623, 1053
AcoI YGGCCR 3 cut(s) 81, 228, 491
AcyI GRCGYC 3 cut(s) 47, 324, 378
AfaI GTAC 2 cut(s) 701, 1042
AfiI CCNNNNNNNGG 6 cut(s) 204, 210, 211, 226, 557, 1021
AgsI TTSAA 1 cut(s) 859
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 355, 694, 712, 977
AluI AGCT 4 cut(s) 355, 694, 712, 977
Alw21I GWGCWC 3 cut(s) 273, 714, 817
AlwI GGATC 3 cut(s) 569, 623, 1053
AoxI GGCC 5 cut(s) 81, 213, 228, 491, 669
ApaI GGGCCC 1 cut(s) 217
ArsI GACNNNNNNTTYG 2 cut(s) 708, 740
AspLEI GCGC 8 cut(s) 7, 49, 210, 225, 311, 326, 607, 754
AspS9I GGNCC 4 cut(s) 213, 214, 670, 678
AsuC2I CCSGG 3 cut(s) 205, 552, 1022
AsuHPI GGTGA 4 cut(s) 391, 479, 750, 773
AvaII GGWCC 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 46, 323
BanII GRGCYC 3 cut(s) 217, 552, 714
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 3 cut(s) 273, 714, 817
BccI CCATC 4 cut(s) 169, 248, 433, 931
BceAI ACGGC 4 cut(s) 92, 322, 368, 478
BciT130I CCWGG 1 cut(s) 251
BcnI CCSGG 3 cut(s) 205, 552, 1022
BfaI CTAG 2 cut(s) 188, 776
BfmI CTRYAG 1 cut(s) 695
BfoI RGCGCY 4 cut(s) 50, 226, 327, 755
BfuAI ACCTGC 1 cut(s) 898
Bme1390I CCNGG 4 cut(s) 205, 251, 552, 1022
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 4 cut(s) 213, 214, 670, 678
BmiI GGNNCC 5 cut(s) 48, 214, 215, 293, 325
BmrFI CCNGG 4 cut(s) 205, 251, 552, 1022
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 3 cut(s) 489, 511, 853
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 2 cut(s) 803, 828
BpuMI CCSGG 3 cut(s) 205, 552, 1022
BsaBI GATNNNNATC 1 cut(s) 867
BsaHI GRCGYC 3 cut(s) 47, 324, 378
BsaJI CCNNGG 2 cut(s) 304, 761
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 210, 211, 226, 557, 1021
Bse118I RCCGGY 2 cut(s) 219, 489
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 731
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 304, 761
BseGI GGATG 2 cut(s) 180, 425
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 6 cut(s) 204, 210, 211, 226, 557, 1021
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 2 cut(s) 50, 608
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 4 cut(s) 88, 187, 293, 394
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 491
BseYI CCCAGC 4 cut(s) 26, 138, 578, 672
Bsh1236I CGCG 3 cut(s) 210, 245, 311
Bsh1285I CGRYCG 3 cut(s) 337, 494, 513
BshFI GGCC 5 cut(s) 83, 215, 230, 493, 671
BshNI GGYRCC 2 cut(s) 46, 323
BsiEI CGRYCG 3 cut(s) 337, 494, 513
BsiHKAI GWGCWC 3 cut(s) 273, 714, 817
BsiSI CCGG 5 cut(s) 205, 220, 490, 552, 1022
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 6 cut(s) 204, 210, 211, 226, 557, 1021
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 5 cut(s) 83, 215, 230, 493, 671
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 5 cut(s) 217, 273, 552, 714, 817
Bsp143I GATC 5 cut(s) 510, 574, 628, 778, 1045
BspANI GGCC 5 cut(s) 83, 215, 230, 493, 671
BspCNI CTCAG 2 cut(s) 49, 607
BspFNI CGCG 3 cut(s) 210, 245, 311
BspLI GGNNCC 5 cut(s) 48, 214, 215, 293, 325
BspMAI CTGCAG 1 cut(s) 699
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 3 cut(s) 569, 623, 1053
BspQI GCTCTTC 1 cut(s) 536
BspT107I GGYRCC 2 cut(s) 46, 323
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 2 cut(s) 219, 489
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 2 cut(s) 219, 489
BssECI CCNNGG 2 cut(s) 304, 761
BssMI GATC 5 cut(s) 510, 574, 628, 778, 1045
BssNI GRCGYC 3 cut(s) 47, 324, 378
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 5 cut(s) 159, 301, 397, 518, 812
Bst6I CTCTTC 2 cut(s) 169, 536
BstACI GRCGYC 3 cut(s) 47, 324, 378
BstC8I GCNNGC 4 cut(s) 232, 548, 603, 1005
BstDEI CTNAG 2 cut(s) 36, 594
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 180, 425
BstFNI CGCG 3 cut(s) 210, 245, 311
BstH2I RGCGCY 4 cut(s) 50, 226, 327, 755
BstHHI GCGC 8 cut(s) 7, 49, 210, 225, 311, 326, 607, 754
BstKTI GATC 5 cut(s) 513, 577, 631, 781, 1048
BstMBI GATC 5 cut(s) 510, 574, 628, 778, 1045
BstMCI CGRYCG 3 cut(s) 337, 494, 513
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 4 cut(s) 203, 249, 550, 1020
BstSFI CTRYAG 1 cut(s) 695
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 3 cut(s) 210, 245, 311
BstZI CGGCCG 1 cut(s) 491
BsuRI GGCC 5 cut(s) 83, 215, 230, 493, 671
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 180, 425
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 608, 817
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 4 cut(s) 232, 548, 603, 1005
CfoI GCGC 8 cut(s) 7, 49, 210, 225, 311, 326, 607, 754
Cfr10I RCCGGY 2 cut(s) 219, 489
Cfr13I GGNCC 4 cut(s) 213, 214, 670, 678
CseI GACGC 1 cut(s) 712
Csp6I GTAC 2 cut(s) 700, 1041
CviAII CATG 5 cut(s) 31, 358, 364, 602, 1033
CviQI GTAC 2 cut(s) 700, 1041
DdeI CTNAG 2 cut(s) 36, 594
DinI GGCGCC 2 cut(s) 48, 325
DpnI GATC 5 cut(s) 512, 576, 630, 780, 1047
DpnII GATC 5 cut(s) 510, 574, 628, 778, 1045
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 3 cut(s) 81, 228, 491
EagI CGGCCG 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 169, 536
EarI CTCTTC 2 cut(s) 169, 536
EciI GGCGGA 3 cut(s) 91, 190, 1040
Ecl136II GAGCTC 1 cut(s) 712
EclXI CGGCCG 1 cut(s) 491
Eco24I GRGCYC 3 cut(s) 217, 552, 714
Eco47I GGWCC 1 cut(s) 678
Eco52I CGGCCG 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 504
EcoT38I GRGCYC 3 cut(s) 217, 552, 714
EgeI GGCGCC 2 cut(s) 48, 325
EheI GGCGCC 2 cut(s) 48, 325
FaeI CATG 5 cut(s) 34, 361, 367, 605, 1036
FaiI YATR 7 cut(s) 32, 359, 365, 603, 704, 1034, 1070
FaqI GGGAC 1 cut(s) 371
FatI CATG 5 cut(s) 30, 357, 363, 601, 1032
FauI CCCGC 4 cut(s) 203, 278, 594, 631
FokI GGATG 2 cut(s) 187, 412
FriOI GRGCYC 3 cut(s) 217, 552, 714
FspBI CTAG 2 cut(s) 188, 776
GlaI GCGC 8 cut(s) 6, 48, 209, 224, 310, 325, 606, 753
GsaI CCCAGC 4 cut(s) 30, 142, 582, 676
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 4 cut(s) 50, 226, 327, 755
HaeIII GGCC 5 cut(s) 83, 215, 230, 493, 671
HapII CCGG 5 cut(s) 205, 220, 490, 552, 1022
HgaI GACGC 1 cut(s) 712
HhaI GCGC 8 cut(s) 7, 49, 210, 225, 311, 326, 607, 754
Hin1I GRCGYC 3 cut(s) 47, 324, 378
Hin1II CATG 5 cut(s) 34, 361, 367, 605, 1036
Hin6I GCGC 8 cut(s) 5, 47, 208, 223, 309, 324, 605, 752
HinP1I GCGC 8 cut(s) 5, 47, 208, 223, 309, 324, 605, 752
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 7 cut(s) 34, 236, 254, 454, 648, 658, 793
HpaII CCGG 5 cut(s) 205, 220, 490, 552, 1022
HphI GGTGA 4 cut(s) 391, 479, 750, 773
Hpy166II GTNNAC 3 cut(s) 112, 304, 469
Hpy188I TCNGA 5 cut(s) 39, 373, 430, 709, 742
Hpy188III TCNNGA 6 cut(s) 458, 508, 681, 776, 845, 872
Hpy8I GTNNAC 3 cut(s) 112, 304, 469
Hpy99I CGWCG 9 cut(s) 278, 347, 350, 377, 380, 383, 412, 452, 518
HpyAV CCTTC 1 cut(s) 880
HpyCH4III ACNGT 5 cut(s) 159, 301, 397, 518, 812
HpyCH4IV ACGT 2 cut(s) 378, 465
HpyCH4V TGCA 4 cut(s) 502, 697, 736, 770
HpyF3I CTNAG 2 cut(s) 36, 594
HpySE526I ACGT 2 cut(s) 378, 465
Hsp92I GRCGYC 3 cut(s) 47, 324, 378
Hsp92II CATG 5 cut(s) 34, 361, 367, 605, 1036
HspAI GCGC 8 cut(s) 5, 47, 208, 223, 309, 324, 605, 752
KasI GGCGCC 2 cut(s) 46, 323
Kzo9I GATC 5 cut(s) 510, 574, 628, 778, 1045
LguI GCTCTTC 1 cut(s) 536
LmnI GCTCC 3 cut(s) 709, 982, 1054
LweI GCATC 3 cut(s) 489, 511, 853
MaeI CTAG 2 cut(s) 188, 776
MaeII ACGT 2 cut(s) 378, 465
MaeIII GTNAC 2 cut(s) 397, 724
MalI GATC 5 cut(s) 512, 576, 630, 780, 1047
MboI GATC 5 cut(s) 510, 574, 628, 778, 1045
MboII GAAGA 3 cut(s) 156, 553, 946
MhlI GDGCHC 5 cut(s) 217, 273, 552, 714, 817
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 8, 1072
MluNI TGGCCA 1 cut(s) 83
Mly113I GGCGCC 2 cut(s) 47, 324
MlyI GAGTC 3 cut(s) 28, 230, 263
MmeI TCCRAC 4 cut(s) 152, 396, 453, 720
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 504
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 483, 881, 902
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 3 cut(s) 262, 676, 1060
MspI CCGG 5 cut(s) 205, 220, 490, 552, 1022
MspR9I CCNGG 4 cut(s) 205, 251, 552, 1022
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 3 cut(s) 210, 245, 311
NarI GGCGCC 2 cut(s) 47, 324
NciI CCSGG 3 cut(s) 205, 552, 1022
NdeII GATC 5 cut(s) 510, 574, 628, 778, 1045
NlaIII CATG 5 cut(s) 34, 361, 367, 605, 1036
NlaIV GGNNCC 5 cut(s) 48, 214, 215, 293, 325
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 397, 724
NsiI ATGCAT 1 cut(s) 504
NspI RCATGY 1 cut(s) 605
PaeI GCATGC 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 4 cut(s) 339, 381, 456, 720
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 4 cut(s) 454, 648, 658, 793
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 249
Ple19I CGATCG 1 cut(s) 513
PleI GAGTC 3 cut(s) 28, 230, 262
PluTI GGCGCC 2 cut(s) 50, 327
PpsI GAGTC 3 cut(s) 28, 230, 262
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 4 cut(s) 26, 138, 578, 672
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 5 cut(s) 48, 214, 215, 293, 325
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 4 cut(s) 213, 214, 670, 678
PstI CTGCAG 1 cut(s) 699
PsyI GACNNNGTC 1 cut(s) 377
PvuI CGATCG 1 cut(s) 513
RsaI GTAC 2 cut(s) 701, 1042
RsaNI GTAC 2 cut(s) 700, 1041
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 714
SapI GCTCTTC 1 cut(s) 536
SaqAI TTAA 3 cut(s) 483, 881, 902
Sau3AI GATC 5 cut(s) 510, 574, 628, 778, 1045
Sau96I GGNCC 4 cut(s) 213, 214, 670, 678
SchI GAGTC 3 cut(s) 28, 230, 263
ScrFI CCNGG 4 cut(s) 205, 251, 552, 1022
SduI GDGCHC 5 cut(s) 217, 273, 552, 714, 817
SfaNI GCATC 3 cut(s) 489, 511, 853
SfcI CTRYAG 1 cut(s) 695
SfoI GGCGCC 2 cut(s) 48, 325
SgrAI CRCCGGYG 1 cut(s) 219
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 818, 843
SmoI CTYRAG 2 cut(s) 818, 843
SphI GCATGC 1 cut(s) 605
Sse9I AATT 2 cut(s) 8, 1072
SspDI GGCGCC 2 cut(s) 46, 323
SspMI CTAG 2 cut(s) 188, 776
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 4 cut(s) 203, 249, 550, 1020
TaaI ACNGT 5 cut(s) 159, 301, 397, 518, 812
TaiI ACGT 2 cut(s) 381, 468
TaqI TCGA 6 cut(s) 273, 333, 342, 410, 513, 714
TasI AATT 2 cut(s) 8, 1072
TatI WGTACW 1 cut(s) 699
TauI GCSGC 5 cut(s) 107, 262, 971, 974, 1063
TfiI GAWTC 4 cut(s) 454, 648, 658, 793
Tru1I TTAA 3 cut(s) 483, 881, 902
Tru9I TTAA 3 cut(s) 483, 881, 902
TscAI CASTG 2 cut(s) 615, 817
TseFI GTSAC 2 cut(s) 397, 724
Tsp45I GTSAC 2 cut(s) 397, 724
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 2 cut(s) 615, 817
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 678
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 2 cut(s) 188, 776
ZraI GACGTC 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.