pycom03g18330
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015705
Physical Location & Seq
Reverse (-)
19309102 .. 19311156
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g18330.4

Sequence Viewer

Length: 1062 bp
ATGGCACAATTACCTCCTAAAATACCAAGCATGACACAGAATTGGCCATCCTTCCCTCACCAAAGGCTACCCGCCATGGCCAATTTCATCCCCACCACCACCACAACCACTTCTGCCGCCGCCGTCCAACCCTCTTCCAACCAACCGAACCAACAACAACAACAACAATCCTCGTCATACAATTGGATCGACGAGTTCCTCGACTTCTCCTCCGCCAGGCGCGGGGCGCACCGGAGGTCGGCGAGCGACTCCATTGCCTTCTTAGAGTCCCCGCTTATACTAGAAGAGGAATGCAGGAACCCCACCGCCACCATGATGCATCATCACGGATCGACCAACAACCTCGGCTTCGACAGGCTAGACGACGAGCAGCTCATGTCCATGTTCTCTGACGACATGTCGGTGACCGTGCCGCCTACCGTCTCGTCTTCCAGCCCGTCCACGCCGTCCGACCAGAACAGCAATAACGACGAAAACAATATTAACAATGAAAATAATAATAACAAGAAGCCATTGATGGTTCATCTGGACCAGCAGCAGCCGAAAACTGAGCCCGGAGAGGTTGAAAGCTCGTCGTGCGAGGCTGACGCTAATGCTCAATCTCACCCGCCACCTCCAACCTCCCCGGCTGACCCCAAGAGGGTCAAAAGGATTTTGGCAAACCGGCAATCAGCACAGAGGTCGAGAGTGAGAAAGCTGCAATATATTTCAGAGCTTGAACGCAGCGTTACAACATTACAGTCGGAGGTATCGGCACTGTCACCAAGGGTTGCATTTCTAGACCACCAGAGGTTGATTCTAAACGTTGATAATAGTGCTCTCAAGCAACGGATTGCTGCTTTGGCTCAGGACAAGCTTTTCAAAGATGCTCATCAAGAGGTACTAAAGAGGGAAATAGAGAGGTTAAGGCAGGTCTATCACCACCAAACCCTAAAGAACATGGGCAATCAAGGAAACCAAAACGCACAGCAGCATCAAAAGCAACAGCAACAGCAGCAGCAGCAATCAAACCCAGACATCATGGTCTGTACGGATCACAATGAGCAGCAAATTCTCAATTGA

Protein Analysis

354

Amino Acids

39.84

Weight (kDa)

6.23

Isoelectric Point (pI)

73.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015705)

Species Orthologous Gene IDs
malus_domestica MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis pycom03g18330 pycom11g22760
rosa_chinensis RchiOBHm_Chr5g0031811
rosa_laevigata RLG00000033348
rosa_multiflora Rmu_sc0006847.1_g000027
rosa_roxburghii Rroxscaffold_1G00048460
rosa_rugosa Rorug05G0127700
rosa_samantha Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana Rw5G020240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1022
Acc36I ACCTGC 1 cut(s) 901
AccII CGCG 1 cut(s) 222
AciI CCGC 9 cut(s) 72, 117, 120, 213, 222, 272, 306, 413, 608
AclI AACGTT 1 cut(s) 804
AclWI GGATC 3 cut(s) 194, 337, 1041
AcoI YGGCCR 2 cut(s) 44, 78
AcsI RAATTY 1 cut(s) 1050
AfaI GTAC 2 cut(s) 882, 1030
AfiI CCNNNNNNNGG 4 cut(s) 216, 222, 238, 640
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 566, 719, 862
AhdI GACNNNNNGTC 1 cut(s) 397
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 5 cut(s) 373, 570, 697, 715, 856
AluI AGCT 5 cut(s) 373, 570, 697, 715, 856
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 3 cut(s) 194, 337, 1041
AoxI GGCC 2 cut(s) 44, 78
ApoI RAATTY 1 cut(s) 1050
AspLEI GCGC 2 cut(s) 222, 229
AspS9I GGNCC 1 cut(s) 529
AsuC2I CCSGG 2 cut(s) 555, 626
AsuHPI GGTGA 5 cut(s) 50, 415, 596, 753, 911
AvaII GGWCC 1 cut(s) 529
BalI TGGCCA 2 cut(s) 46, 80
BanII GRGCYC 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 820
BccI CCATC 2 cut(s) 55, 511
BceAI ACGGC 2 cut(s) 107, 430
BcgI CGANNNNNNTGC 4 cut(s) 236, 270, 663, 697
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 2 cut(s) 555, 626
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 3 cut(s) 281, 359, 779
BfuAI ACCTGC 1 cut(s) 901
Bme1390I CCNGG 3 cut(s) 217, 555, 626
Bme18I GGWCC 1 cut(s) 529
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 217, 555, 626
BmsI GCATC 4 cut(s) 306, 328, 856, 982
BpiI GAAGAC 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 806
BpuMI CCSGG 2 cut(s) 555, 626
BsaBI GATNNNNATC 1 cut(s) 870
BsaJI CCNNGG 4 cut(s) 75, 343, 624, 764
BsaWI WCCGGW 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 4 cut(s) 216, 222, 238, 640
Bse118I RCCGGY 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 75, 343, 624, 764
BseGI GGATG 2 cut(s) 47, 87
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 4 cut(s) 216, 222, 238, 640
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 540, 860
BseRI GAGGAG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 46, 80
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 4 cut(s) 232, 555, 626, 664
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 4 cut(s) 216, 222, 238, 640
BsmAI GTCTC 1 cut(s) 427
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 2 cut(s) 46, 80
Bsp1286I GDGCHC 2 cut(s) 555, 820
Bsp143I GATC 3 cut(s) 186, 329, 1033
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 9 cut(s) 72, 117, 120, 213, 222, 272, 306, 413, 608
BspANI GGCC 2 cut(s) 46, 80
BspCNI CTCAG 2 cut(s) 541, 859
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 194, 337, 1041
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 4 cut(s) 75, 343, 624, 764
BssMI GATC 3 cut(s) 186, 329, 1033
BssT1I CCWWGG 2 cut(s) 75, 764
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 4 cut(s) 409, 421, 741, 759
Bst6I CTCTTC 2 cut(s) 139, 279
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 262, 549, 846
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 403
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 47, 87
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 2 cut(s) 222, 229
BstKTI GATC 3 cut(s) 189, 332, 1036
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 3 cut(s) 186, 329, 1033
BstMWI GCNNNNNNNGC 6 cut(s) 226, 576, 842, 979, 994, 1000
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 215, 553, 624
BstUI CGCG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 46, 80
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 47, 87
BtsIMutI CAGTG 1 cut(s) 755
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 2 cut(s) 222, 229
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 881, 1029
CviAII CATG 8 cut(s) 31, 76, 313, 376, 382, 397, 940, 1021
CviQI GTAC 2 cut(s) 881, 1029
DdeI CTNAG 3 cut(s) 262, 549, 846
DpnI GATC 3 cut(s) 188, 331, 1035
DpnII GATC 3 cut(s) 186, 329, 1033
DrdI GACNNNNNNGTC 1 cut(s) 1022
DriI GACNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 1022
EaeI YGGCCR 2 cut(s) 44, 78
Eam1104I CTCTTC 2 cut(s) 139, 279
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 2 cut(s) 139, 279
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 75, 764
Eco24I GRGCYC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 529
Eco91I GGTNACC 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 75, 764
EcoT22I ATGCAT 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 2 cut(s) 75, 764
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 8 cut(s) 34, 79, 316, 379, 385, 400, 943, 1024
FaqI GGGAC 1 cut(s) 253
FatI CATG 8 cut(s) 30, 75, 312, 375, 381, 396, 939, 1020
FauI CCCGC 4 cut(s) 79, 215, 279, 615
FokI GGATG 2 cut(s) 34, 74
FriOI GRGCYC 1 cut(s) 555
FspBI CTAG 3 cut(s) 281, 359, 779
GlaI GCGC 2 cut(s) 221, 228
HaeIII GGCC 2 cut(s) 46, 80
HapII CCGG 4 cut(s) 232, 555, 626, 664
HgaI GACGC 1 cut(s) 596
HhaI GCGC 2 cut(s) 222, 229
Hin1II CATG 8 cut(s) 34, 79, 316, 379, 385, 400, 943, 1024
Hin6I GCGC 2 cut(s) 220, 227
HinP1I GCGC 2 cut(s) 220, 227
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 3 cut(s) 248, 266, 796
HpaII CCGG 4 cut(s) 232, 555, 626, 664
HphI GGTGA 5 cut(s) 50, 415, 596, 753, 911
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 4 cut(s) 391, 451, 712, 745
Hpy188III TCNNGA 5 cut(s) 527, 684, 779, 848, 875
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 4 cut(s) 194, 368, 473, 577
HpyAV CCTTC 2 cut(s) 61, 268
HpyCH4III ACNGT 4 cut(s) 409, 421, 741, 759
HpyCH4IV ACGT 1 cut(s) 804
HpyCH4V TGCA 4 cut(s) 294, 319, 700, 773
HpyF10VI GCNNNNNNNGC 6 cut(s) 226, 576, 842, 979, 994, 1000
HpyF3I CTNAG 3 cut(s) 262, 549, 846
HpySE526I ACGT 1 cut(s) 804
Hsp92II CATG 8 cut(s) 34, 79, 316, 379, 385, 400, 943, 1024
HspAI GCGC 2 cut(s) 220, 227
Kzo9I GATC 3 cut(s) 186, 329, 1033
LweI GCATC 4 cut(s) 306, 328, 856, 982
MaeI CTAG 3 cut(s) 281, 359, 779
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 3 cut(s) 403, 727, 759
MalI GATC 3 cut(s) 188, 331, 1035
MboI GATC 3 cut(s) 186, 329, 1033
MboII GAAGA 3 cut(s) 126, 296, 420
MfeI CAATTG 2 cut(s) 181, 1057
MhlI GDGCHC 2 cut(s) 555, 820
MlsI TGGCCA 2 cut(s) 46, 80
MluCI AATT 6 cut(s) 8, 40, 82, 181, 1050, 1057
MluNI TGGCCA 2 cut(s) 46, 80
MlyI GAGTC 2 cut(s) 242, 275
MmeI TCCRAC 5 cut(s) 151, 162, 474, 641, 723
Mox20I TGGCCA 2 cut(s) 46, 80
Mph1103I ATGCAT 1 cut(s) 321
MscI TGGCCA 2 cut(s) 46, 80
MseI TTAA 2 cut(s) 483, 905
MslI CAYNNNNRTG 3 cut(s) 314, 380, 401
Msp20I TGGCCA 2 cut(s) 46, 80
MspI CCGG 4 cut(s) 232, 555, 626, 664
MspR9I CCNGG 3 cut(s) 217, 555, 626
MunI CAATTG 2 cut(s) 181, 1057
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 6 cut(s) 226, 576, 842, 979, 994, 1000
NciI CCSGG 2 cut(s) 555, 626
NcoI CCATGG 1 cut(s) 75
NdeII GATC 3 cut(s) 186, 329, 1033
NlaIII CATG 8 cut(s) 34, 79, 316, 379, 385, 400, 943, 1024
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 403, 759
NsiI ATGCAT 1 cut(s) 321
NspI RCATGY 1 cut(s) 400
PciI ACATGT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 796
PleI GAGTC 2 cut(s) 242, 274
PpsI GAGTC 2 cut(s) 242, 274
PscI ACATGT 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 529
RsaI GTAC 2 cut(s) 882, 1030
RsaNI GTAC 2 cut(s) 881, 1029
RseI CAYNNNNRTG 3 cut(s) 314, 380, 401
SaqAI TTAA 2 cut(s) 483, 905
Sau3AI GATC 3 cut(s) 186, 329, 1033
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 2 cut(s) 242, 275
ScrFI CCNGG 3 cut(s) 217, 555, 626
SduI GDGCHC 2 cut(s) 555, 820
SfaNI GCATC 4 cut(s) 306, 328, 856, 982
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 3 cut(s) 314, 380, 401
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 6 cut(s) 8, 40, 82, 181, 1050, 1057
SsiI CCGC 9 cut(s) 72, 117, 120, 213, 222, 272, 306, 413, 608
SspI AATATT 1 cut(s) 481
SspMI CTAG 3 cut(s) 281, 359, 779
StyD4I CCNGG 3 cut(s) 215, 553, 624
StyI CCWWGG 2 cut(s) 75, 764
TaaI ACNGT 4 cut(s) 409, 421, 741, 759
TaiI ACGT 1 cut(s) 807
TaqI TCGA 5 cut(s) 189, 201, 332, 351, 683
TasI AATT 6 cut(s) 8, 40, 82, 181, 1050, 1057
TauI GCSGC 3 cut(s) 119, 122, 415
TfiI GAWTC 1 cut(s) 796
Tru1I TTAA 2 cut(s) 483, 905
Tru9I TTAA 2 cut(s) 483, 905
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 2 cut(s) 403, 759
Tsp45I GTSAC 2 cut(s) 403, 759
TspDTI ATGAA 3 cut(s) 76, 504, 512
TspGWI ACGGA 3 cut(s) 342, 844, 1046
TspRI CASTG 1 cut(s) 762
VpaK11BI GGWCC 1 cut(s) 529
XagI CCTNNNNNAGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 1050
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 1 cut(s) 400
XspI CTAG 3 cut(s) 281, 359, 779
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.