Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015705

Physical Location & Seq

Genomic Coordinates Reverse (-)

37133607 .. 37136942

Gene Structure 3336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1258200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCACAATTACCTCCTAAAATACCAAGCATGACACAAAATTGGCCATCCTTCCCTCACCAAAGGCTACCCGCCATGGCCAATTTCATCCCCACCGCCACGACCACTTCCGCCGCCGCAGTTCAACCCTCTTCCAACCAACCGAACCAACAACAACAATCCTCGTCGTGCAATTGGATGGACGAGTTCCTCGACTTCTCCTCCGCCAGGCGCGGGGCCCATCGGAGGTCTGCAAGCGACTCCATTGCCTTTCTTGAGTCCCCGTTGATACTTGACGAGGAATGCAGGAATCCTACCGCCACCATGATGCATCATCACGGATCGACCAACAACCTCGGCTTCGACAGACTGGACGACGAGCAGCTAATGTCCATGTTCTCCGATGACATGTCGGTGACCGTGCCGCCTACCATCTCGTCGTCCAACCCGTCCACGCCGTCCGACCAGAACAGCAATAACGACGAGAACAATATTAATAATGGCAATAATAATAACATGAAGCCATTGATGCTTCATTTGGACCAGCAGCAGCAGCCTAAAACGGAGCCCGGAGAGGTTGAAAGCTCGTCGTGCGAGGCTGACGCTAATGCTCAATCTCATCCGCCACCGCCCACCTCCCCGGCTGACCCAAAGAGGGTCAAAAGGATTTTGGCAAACCGGCAATCAGCACAGAGGTCGAGGGTGAGAAAATTGCAATATATTTCGGAGCTTGAACGCAGCGTTACAACATTACAGTCGGAGGTATCGGCGCTGTCACCAAGGGTTGCATTTCTAGACCACCAGAGGTTGATTCTAAACGTTGATAATAGTGCTCTCAAGCAACGGATTGCTGCTTTGGCTCAAGACAAGCTTTTCAAAGATGCTCATCAAGAGGCACTAAAGAAGGAAATAGAGAGGTTAAGGCAGGTCTATCACCACCAAACCCTAAAGAAGATGGACAACCAAGGAAACCGAAACCAAAACGCTCAGCAGCATCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAATCAAACCCAGACATCATGGTCTGTACGGATCACAATGAGCAGCAAATTCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

357

Amino Acids

40.18

Weight (kDa)

6.22

Isoelectric Point (pI)

72.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	209 - 256	2.3e-08	Basic region leucine zipper
bZIP_1	PF00170	211 - 255	1.8e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015705)

Species	Orthologous Gene IDs
malus_domestica	MD03G1237600.v1.1 MD11G1258200.v1.1
prunus_persica	Prupe.4G172000_v2.0.a1 Prupe.4G172000_v2.0.a1
pyrus_communis	pycom03g18330 pycom11g22760
rosa_chinensis	RchiOBHm_Chr5g0031811
rosa_laevigata	RLG00000033348
rosa_multiflora	Rmu_sc0006847.1_g000027
rosa_roxburghii	Rroxscaffold_1G00048460
rosa_rugosa	Rorug05G0127700
rosa_samantha	Rh5AG222000 Rh5BG222000 Rh5CG245300 Rh5DG226900
rosa_wichuraiana	Rw5G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1031
Acc36I	ACCTGC	1 cut(s)	895
AccII	CGCG	1 cut(s)	213
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	2 cut(s)	328, 1050
AcoI	YGGCCR	2 cut(s)	44, 78
AcsI	RAATTY	1 cut(s)	1059
AfaI	GTAC	1 cut(s)	1039
AfiI	CCNNNNNNNGG	4 cut(s)	207, 213, 225, 634
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	125, 560, 713, 856
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	364, 564, 709, 850
AluI	AGCT	4 cut(s)	364, 564, 709, 850
Alw21I	GWGCWC	1 cut(s)	814
AlwI	GGATC	2 cut(s)	328, 1050
AoxI	GGCC	3 cut(s)	44, 78, 216
ApaI	GGGCCC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	1059
AseI	ATTAAT	1 cut(s)	474
AspLEI	GCGC	2 cut(s)	213, 751
AspS9I	GGNCC	3 cut(s)	216, 217, 520
AsuC2I	CCSGG	2 cut(s)	549, 620
AsuHPI	GGTGA	5 cut(s)	50, 406, 694, 747, 905
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	220
BalI	TGGCCA	2 cut(s)	46, 80
BanII	GRGCYC	2 cut(s)	220, 549
Bbv12I	GWGCWC	1 cut(s)	814
BccI	CCATC	5 cut(s)	55, 172, 228, 419, 928
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	4 cut(s)	227, 261, 657, 691
BciT130I	CCWGG	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	549, 620
BfaI	CTAG	1 cut(s)	773
BfoI	RGCGCY	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	895
BlpI	GCTNAGC	1 cut(s)	966
Bme1390I	CCNGG	3 cut(s)	208, 549, 620
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	3 cut(s)	216, 217, 520
BmiI	GGNNCC	3 cut(s)	217, 218, 546
BmrFI	CCNGG	3 cut(s)	208, 549, 620
BmsI	GCATC	5 cut(s)	297, 319, 498, 850, 982
Bpu1102I	GCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	3 cut(s)	275, 800, 825
BpuMI	CCSGG	2 cut(s)	549, 620
BsaBI	GATNNNNATC	1 cut(s)	864
BsaJI	CCNNGG	5 cut(s)	75, 334, 618, 758, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 213, 225, 634
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	5 cut(s)	75, 334, 618, 758, 943
BseGI	GGATG	4 cut(s)	47, 87, 183, 598
BseJI	GATNNNNATC	1 cut(s)	864
BseLI	CCNNNNNNNGG	4 cut(s)	207, 213, 225, 634
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	980
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	46, 80, 218
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	3 cut(s)	549, 620, 658
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	207, 213, 225, 634
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	46, 80, 218
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	3 cut(s)	220, 549, 814
Bsp143I	GATC	2 cut(s)	320, 1042
Bsp1720I	GCTNAGC	1 cut(s)	966
Bsp19I	CCATGG	1 cut(s)	75
BspANI	GGCC	3 cut(s)	46, 80, 218
BspCNI	CTCAG	1 cut(s)	979
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	217, 218, 546
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	2 cut(s)	328, 1050
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	5 cut(s)	75, 334, 618, 758, 943
BssMI	GATC	2 cut(s)	320, 1042
BssT1I	CCWWGG	3 cut(s)	75, 758, 943
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	400, 735
Bst6I	CTCTTC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	966
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	394
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	4 cut(s)	47, 87, 183, 598
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	752
BstHHI	GCGC	2 cut(s)	213, 751
BstKTI	GATC	2 cut(s)	323, 1045
BstMBI	GATC	2 cut(s)	320, 1042
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	394
BstSCI	CCNGG	3 cut(s)	206, 547, 618
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	46, 80, 218
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	47, 87, 183, 598
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	1 cut(s)	235
CfoI	GCGC	2 cut(s)	213, 751
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	216, 217, 520
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	1038
CviAII	CATG	7 cut(s)	31, 76, 304, 373, 388, 496, 1030
CviQI	GTAC	1 cut(s)	1038
DdeI	CTNAG	1 cut(s)	966
DpnI	GATC	2 cut(s)	322, 1044
DpnII	GATC	2 cut(s)	320, 1042
DrdI	GACNNNNNNGTC	1 cut(s)	1031
DseDI	GACNNNNNNGTC	1 cut(s)	1031
EaeI	YGGCCR	2 cut(s)	44, 78
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
EciI	GGCGGA	3 cut(s)	100, 193, 591
Eco130I	CCWWGG	3 cut(s)	75, 758, 943
Eco24I	GRGCYC	2 cut(s)	220, 549
Eco47I	GGWCC	1 cut(s)	520
Eco91I	GGTNACC	1 cut(s)	394
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	216
EcoO65I	GGTNACC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	3 cut(s)	75, 758, 943
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	2 cut(s)	220, 549
ErhI	CCWWGG	3 cut(s)	75, 758, 943
FaeI	CATG	7 cut(s)	34, 79, 307, 376, 391, 499, 1033
FaiI	YATR	8 cut(s)	32, 77, 305, 374, 389, 497, 699, 1031
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	7 cut(s)	30, 75, 303, 372, 387, 495, 1029
FauI	CCCGC	2 cut(s)	79, 206
FokI	GGATG	4 cut(s)	34, 74, 190, 585
FriOI	GRGCYC	2 cut(s)	220, 549
FspBI	CTAG	1 cut(s)	773
GlaI	GCGC	2 cut(s)	212, 750
HaeII	RGCGCY	1 cut(s)	752
HaeIII	GGCC	3 cut(s)	46, 80, 218
HapII	CCGG	3 cut(s)	549, 620, 658
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	213, 751
Hin1II	CATG	7 cut(s)	34, 79, 307, 376, 391, 499, 1033
Hin6I	GCGC	2 cut(s)	211, 749
HinP1I	GCGC	2 cut(s)	211, 749
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	4 cut(s)	239, 257, 289, 790
HpaII	CCGG	3 cut(s)	549, 620, 658
HphI	GGTGA	5 cut(s)	50, 406, 694, 747, 905
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	5 cut(s)	225, 382, 442, 706, 739
Hpy188III	TCNNGA	4 cut(s)	254, 773, 842, 869
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	5 cut(s)	169, 359, 421, 464, 571
HpyAV	CCTTC	2 cut(s)	61, 877
HpyCH4III	ACNGT	2 cut(s)	400, 735
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	6 cut(s)	171, 233, 285, 310, 694, 767
HpyF3I	CTNAG	1 cut(s)	966
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	7 cut(s)	34, 79, 307, 376, 391, 499, 1033
HspAI	GCGC	2 cut(s)	211, 749
Kzo9I	GATC	2 cut(s)	320, 1042
LmnI	GCTCC	2 cut(s)	544, 706
LweI	GCATC	5 cut(s)	297, 319, 498, 850, 982
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	3 cut(s)	394, 721, 753
MalI	GATC	2 cut(s)	322, 1044
MboI	GATC	2 cut(s)	320, 1042
MboII	GAAGA	2 cut(s)	123, 943
MfeI	CAATTG	2 cut(s)	172, 1066
MhlI	GDGCHC	3 cut(s)	220, 549, 814
MlsI	TGGCCA	2 cut(s)	46, 80
MluCI	AATT	7 cut(s)	8, 40, 82, 172, 689, 1059, 1066
MluNI	TGGCCA	2 cut(s)	46, 80
MlyI	GAGTC	2 cut(s)	233, 266
MmeI	TCCRAC	4 cut(s)	159, 447, 465, 717
Mox20I	TGGCCA	2 cut(s)	46, 80
Mph1103I	ATGCAT	1 cut(s)	312
MscI	TGGCCA	2 cut(s)	46, 80
MseI	TTAA	2 cut(s)	474, 899
MslI	CAYNNNNRTG	2 cut(s)	305, 392
Msp20I	TGGCCA	2 cut(s)	46, 80
MspI	CCGG	3 cut(s)	549, 620, 658
MspR9I	CCNGG	3 cut(s)	208, 549, 620
MunI	CAATTG	2 cut(s)	172, 1066
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	2 cut(s)	549, 620
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	320, 1042
NlaIII	CATG	7 cut(s)	34, 79, 307, 376, 391, 499, 1033
NlaIV	GGNNCC	3 cut(s)	217, 218, 546
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	394, 753
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	1 cut(s)	391
PciI	ACATGT	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 425
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	289, 790
PleI	GAGTC	2 cut(s)	233, 265
PpsI	GAGTC	2 cut(s)	233, 265
PscI	ACATGT	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	474
Psp1406I	AACGTT	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	217, 218, 546
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	216, 217, 520
RsaI	GTAC	1 cut(s)	1039
RsaNI	GTAC	1 cut(s)	1038
RseI	CAYNNNNRTG	2 cut(s)	305, 392
SaqAI	TTAA	2 cut(s)	474, 899
Sau3AI	GATC	2 cut(s)	320, 1042
Sau96I	GGNCC	3 cut(s)	216, 217, 520
SchI	GAGTC	2 cut(s)	233, 266
ScrFI	CCNGG	3 cut(s)	208, 549, 620
SduI	GDGCHC	3 cut(s)	220, 549, 814
SfaNI	GCATC	5 cut(s)	297, 319, 498, 850, 982
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	2 cut(s)	305, 392
SmlI	CTYRAG	3 cut(s)	254, 815, 840
SmoI	CTYRAG	3 cut(s)	254, 815, 840
Sse9I	AATT	7 cut(s)	8, 40, 82, 172, 689, 1059, 1066
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	3 cut(s)	206, 547, 618
StyI	CCWWGG	3 cut(s)	75, 758, 943
TaaI	ACNGT	2 cut(s)	400, 735
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	4 cut(s)	192, 323, 342, 677
TasI	AATT	7 cut(s)	8, 40, 82, 172, 689, 1059, 1066
TauI	GCSGC	3 cut(s)	116, 119, 406
TfiI	GAWTC	2 cut(s)	289, 790
Tru1I	TTAA	2 cut(s)	474, 899
Tru9I	TTAA	2 cut(s)	474, 899
TseFI	GTSAC	2 cut(s)	394, 753
Tsp45I	GTSAC	2 cut(s)	394, 753
TspDTI	ATGAA	3 cut(s)	76, 503, 512
TspGWI	ACGGA	4 cut(s)	333, 557, 838, 1055
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	1059
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	773
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.